FC929863

Overview
NameFC929863
Unique NameFC929863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.326e-31
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 3
Query:  426 LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            LP  VDWR KGAV  +K+Q  CGSCWAFS +AAVE INKI TG LISLSEQELVDCDT+ + GCNGG M+ AF++II NGGIDT+++YPY
Sbjct:    1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA-SHGCNGGWMNNAFQYIITNGGIDTQQNYPY 89          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 76/193 (39.38%), Postives = 110/193 (56.99%), Query Frame = 3
Query:  123 SSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFII--DNGGIDTEEDYPY 695
            ++S   ++ + + F  +  KHG+ Y +  E+  R  +F+ENL     H + N     G+  F+DLT EE+RS +     GA   +   +R+   +       P +VDWR +GAV  VKDQG CGSCWAFS I  VE    +    L +LSEQ LV CD + + GC+GGLM+ AFE+I+  +NG + TE+ YPY
Sbjct:   25 TASLHAEETLTSQFAEFKQKHGRVYESAAEEAFRLSVFRENLFLARLHAAANPHATFGVTPFSDLTREEFRSRYHN---GAAHFAAAQERARVPVKVEVVGAPAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPY 213          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.673e-31
Identity = 82/197 (41.62%), Postives = 110/197 (55.84%), Query Frame = 3
Query:  147 EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHN----SENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLP-RVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD---------TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            E  + F  +  K  K Y+   E  +RFEIFK NL  I+E N    +     K G+N+FADL+++E+++ +L  +       L       YL      ++P + DWR +GAV  VK+QG CGSCW+FST   VEG + I    L+SLSEQ LVDCD          + +EGCNGGL   A+ +II NGGI TE  YPY
Sbjct:   24 EEQSQFLEFQDKFNKKYSH-EEYLERFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVAD---YLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPY 216          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.409e-31
Identity = 78/201 (38.81%), Postives = 110/201 (54.73%), Query Frame = 3
Query:  114 ESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEYRSMHLG-ARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDC-DTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            E  S++   D  +   +  W  KHGK YN   E+ KR  ++++N + I+ HN E       + + +N F DLTN E+  M  G  R   K+T +       Y+P+        VDWR+ G V  VK+QG C S WAFS   ++EG     T  LI LSEQ L+DC  ++   GC+GG M YAF+++ DNGG+ TEE YPY+
Sbjct:   13 EVDSTAPTPDPSLDVEWNEWRTKHGKTYNMNEERLKR-AVWEKNFKMIELHNWEYLEGRHDFTMAMNAFGDLTNIEFVKMMTGFQRQKIKKTHIFQDHQFLYVPK-------RVDWRQLGYVTPVKNQGHCASSWAFSATGSLEGQMFRKTERLIPLSEQNLLDCMGSNVTHGCSGGFMQYAFQYVKDNGGLATEESYPYR 205          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 73/187 (39.04%), Postives = 111/187 (59.36%), Query Frame = 3
Query:  159 MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADLTNEEYRSMHLGARFGAKRT---SLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            ++  W   + K YN   ++ +R  I+++N++ I EHN  +     TY +GLN+F D+T EE+++ +L     A       +  + +NR       A+PD +DWR+ G V EVKDQG+CGSCWAFST   +EG       + IS SEQ+LVDC   + N GC+GGLM+ A+++ +   G++TE  YPY
Sbjct:   20 LWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNR-------AVPDKIDWRESGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGLMENAYQY-LKQFGLETESSYPY 197          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30
Identity = 71/187 (37.97%), Postives = 108/187 (57.75%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYL--------PRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            FE +++ + K Y     K  RF+IFK+NL  I+E N  N +    +N+F+DL+  E  + + G    +K+ S   + ++ +         P V + LP + DWR    +  VKDQG+CGSCWA + +  +E +  I    LI+LSEQ+L+DCD S N  C+GGLM  AFE +++ GG+  E DYPY+
Sbjct:   32 FETFIINYNKQYPDTKTKNYRFKIFKQNLEDINEKNKLNDSAIYNINKFSDLSKNELLTKYTGLT--SKKPSNMVRSTSNFCNVIHLDAPPDVHDELPQNFDWRVNNKMTSVKDQGACGSCWAHAAVGTLETLYAIKHNYLINLSEQQLIDCD-SANMACDGGLMHTAFEQLMNAGGLMEEIDYPYQ 215          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 78/184 (42.39%), Postives = 110/184 (59.78%), Query Frame = 3
Query:  156 AMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN--RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIID--NGGIDTEEDYPY 695
            A + ++  +HGKA+    E+  RF  FK+N++     N++N    Y V   +FADLT +E+  ++L   + A+   LK+ + + ++     +   SVDWR KGAV  VK+QG CGSCWAFS I  +EG       SL+SLSEQ LV CD + +EGCNGGLMD A  +I+   NG + TE  YPY
Sbjct:   40 AHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVS-GKFADLTPQEFAKLYLNPDYYARH--LKNHKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCD-NIDEGCNGGLMDQAMNWIMQSHNGSVFTEASYPY 219          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 78/184 (42.39%), Postives = 109/184 (59.24%), Query Frame = 3
Query:  156 AMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN--RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIID--NGGIDTEEDYPY 695
            A + ++  +HGKA+    E+  RF  FK+N++     N++N    Y V   +FADLT +E+  ++L   + A+   LK  + + ++     +   SVDWR KGAV  VK+QG CGSCWAFS I  +EG       SL+SLSEQ LV CD + +EGCNGGLMD A  +I+   NG + TE  YPY
Sbjct:   40 AHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVS-GKFADLTPQEFAKLYLNPDYYARH--LKDHKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCD-NIDEGCNGGLMDQAMNWIMQSHNGSVFTEASYPY 219          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.192e-30
Identity = 76/199 (38.19%), Postives = 107/199 (53.77%), Query Frame = 3
Query:  114 ESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDC-DTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            E  S++   D  +   +  W  KHGKAYN + E+  R  ++++N + I+ HN E       + + +N F DLTN E+  M  G R        K KR + +       +P  VDWR  G V  VK+QG C S WAFS   ++EG     TG L+ LSEQ L+DC  ++    C+GG M  AF+++ DNGG+ TEE YPY
Sbjct:   13 EIDSTAPTLDPSLDVQWNEWRTKHGKAYN-VNEERLRRAVWEKNFKMIELHNWEYLEGKHDFTMTMNAFGDLTNTEFVKMMTGFR------RQKIKRMHVFQDHQFLYVPKYVDWRMLGYVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDCMGSNVTHDCSGGFMQNAFQYVKDNGGLATEESYPY 204          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.192e-30
Identity = 75/224 (33.48%), Postives = 122/224 (54.46%), Query Frame = 3
Query:   42 MFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGA---RFGAKRTSLKSKRSNRYLPRVGEAL--PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            M+L++ +T+ +    SI +    ++  S+S          +E ++ +H K Y    +++  F  FK NL  ++  N+ +     G+N+F+D+    + + H G       +  ++    R   Y+   G +   P+S DWRK   V +VK+QG CGSCWAF+ I  +E    I+  SLI LSEQ+L+DCD   ++GC+GGLM  AF+ II  GG++ E DYPY+
Sbjct:    1 MYLIYYYTIIAVATASIANEKIFYDIDSAS--------VYYENFIKQHNKEYTTPDQRDAAFVNFKRNLADMNAMNNVSNQAVYGINKFSDIDKITFVNEHAGLVSNLINSTDSNFDPYRLCEYVTVAGPSARTPESFDWRKLNKVTKVKEQGVCGSCWAFAAIGNIESQYAIMHDSLIDLSEQQLLDCD-RVDQGCDGGLMHLAFQEIIRIGGVEHEIDYPYQ 215          
The following BLAST results are available for this feature:
BLAST of FC929863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
ERVB_TABDI3.326e-3170.00Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]
CYSP_TRYCR4.344e-3139.38Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]
CYSP1_DICDI5.673e-3141.62Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
TEST2_RAT7.409e-3138.81Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATLL_FASHE2.156e-3039.04Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CATV_NPVAH2.816e-3037.97Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
LMCPA_LEIME4.803e-3042.39Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
CYSP1_LEIPI6.272e-3042.39Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
TEST2_MOUSE8.192e-3038.19Testin-2 OS=Mus musculus PE=2 SV=1[more]
CATV_NPVST8.192e-3033.48Viral cathepsin OS=Spodoptera litura multicapsid n... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001C04EF PostHarvC1 Citrus clementina cDNA clone C34001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929863 ID=FC929863; Name=FC929863; organism=Citrus clementina; type=EST; length=706bp
TTCTCAAAAGATGGGNTTTGTTTAGATCACCAACCATGGCCATGTTTTTA
CTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTA
TGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGG
TTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAAC
GCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAG
GTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGA
ACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGGT
GCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCG
TTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGA
AGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGC
TGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTAC
AGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACAT
CATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTC
ATTATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTACAAGCC
ATTGAT
back to top