FC929868

Overview
NameFC929868
Unique NameFC929868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_KLEP3 (Chaperone protein dnaJ OS=Klebsiella pneumoniae (strain 342) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 55/134 (41.04%), Postives = 79/134 (58.96%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPE---KFKELGQAYEVLSDPEKRDIYDQYGEDALKE-GMGGAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSL 571
            YYEILGVSK+A E E+KKAY++ AMK HPD+  GD E   KFKE+ +AYE+L+D +KR  YDQYG  A ++ GMGG G      D  +                    +G D+ + ++++LE+   G TK++ +
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEILTDAQKRAAYDQYGHAAFEQGGMGGGGGFGGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRI 139          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_HALMA (Chaperone protein dnaJ OS=Haloarcula marismortui GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 64/193 (33.16%), Postives = 94/193 (48.70%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE--------------GMGG--AGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXY-GCQGTGMKITNRQIGLGMIQQ 703
            +YEILGVS+ A+EDE+++AYR+ A + HPD   DP   EKFK+  +A EVL+D EKR +YDQ G +  ++              GMGG   G     FD+ +                   +QG+D+   L++ LE+ YNG TK+L+++R   C                   C G G     +Q  +G +QQ
Sbjct:    5 FYEILGVSRDASEDEIQEAYREKAREYHPDVSDDPDAEEKFKQAKKAKEVLTDEEKRQMYDQMGHERFEQAEKRGGAGGGGGRGGMGGDPFGGGAGGFDMQDIFDQFFGGGGRGGRGGSRRRQGQDLQTRLEIDLEEAYNGATKQLNVTRPEACDDCDGAGHPPGADSETCPECNGQGQTTQVQQTPMGRVQQ 197          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAU (Chaperone protein dnaJ OS=Staphylococcus aureus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 55/145 (37.93%), Postives = 82/145 (56.55%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPD---KGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNPFDIFE-------XXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YYE+LG+SK A++DE+KKAYRK + K HPD   + G  EKFKE+ +AYEVLSD  KR   DQ+G D   +G GG G   + F  F                           ++G+D+ +T+ ++ E+   GTTK++S+ +++ C
Sbjct:    6 YYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRATIDQFGHDG-PQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGSQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTC 149          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_RHILW (Chaperone protein dnaJ OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 62/169 (36.69%), Postives = 89/169 (52.66%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPE----KFKELGQAYEVLSDPEKRDIYDQYGEDALKE-GMGGAG----AAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQ-GEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXYG-CQGTG 658
            +YE LGV+K+A E ELK A+RK AMK HPDK  D +    KFKE+ +AYE+L DP+KR  YD+YG  A +  GMGG G    A     DIFE                   ++ G D+ + ++++LE+ ++G T ++ +  +I C                 G CQG+G
Sbjct:    6 FYETLGVAKTADEKELKSAFRKLAMKFHPDKNPDDKDAERKFKEINEAYEMLKDPQKRAAYDRYGHAAFEHGGMGGGGGGGFAGGGFSDIFEDIFGEMMGGGRARQRSSGGRERGADLRYNMEITLEEAFSGKTAQIRVPTSITCDVCSGSGAKPGTQPKNCGTCQGSG 174          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEP1 (Chaperone protein dnaJ OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 60/142 (42.25%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPE---KFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAH---NPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YYE+LGV + ATE +LKKAYR+ AMK HPD+  GD E   KFKE  +AYEVLSD  KR  +DQYG   +   MGG GA     N  DIF                    ++G D+ +TL+++LE+   GTT  + +   + C
Sbjct:    6 YYEVLGVERGATEADLKKAYRRLAMKYHPDRNPGDKESEDKFKEANEAYEVLSDASKRAAFDQYGHAGVDPSMGGGGAGFGGANFSDIF-GDVFSDFFGGGRGGGRGGAQRGSDLRYTLELNLEEAVRGTTVSIRVPTLVNC 146          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPIN (Chaperone protein dnaJ OS=Leptospira interrogans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 60/148 (40.54%), Postives = 79/148 (53.38%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG----GDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAG-AAHNPF--------DIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YY+ILGVSKSA ++E+K AYRK A+K HPDK        EKFKE  +AYE+L DP+KR  YDQ+G+  +  G GG G  A+  F        DIF                    ++G D+ + L+VSLED   G   K+ + R   C
Sbjct:    6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVSGGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRSSGFGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESC 153          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPIC (Chaperone protein dnaJ OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 60/148 (40.54%), Postives = 79/148 (53.38%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG----GDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAG-AAHNPF--------DIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YY+ILGVSKSA ++E+K AYRK A+K HPDK        EKFKE  +AYE+L DP+KR  YDQ+G+  +  G GG G  A+  F        DIF                    ++G D+ + L+VSLED   G   K+ + R   C
Sbjct:    6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVSGGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRSSGFGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESC 153          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_LACDB (Chaperone protein dnaJ OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 62/187 (33.16%), Postives = 90/187 (48.13%), Query Frame = 2
Query:  176 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPD---KGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHN-------PFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXYG-CQGTGMKITNRQIGLGMIQQ 703
            N  YY++LGVS+ A++ E+ KAYRK A K HPD   + G  EK+KE+ +AYEVL DP+KR  YDQ+G+  +  G GG G  +         F  F                    ++G D+ +T+ +   D   G T ++S SR+  C                   C G+GM    ++  LGMIQ+
Sbjct:    4 NRDYYDVLGVSRDASDAEISKAYRKLAKKYHPDLNHEAGAEEKYKEVNEAYEVLHDPQKRQQYDQFGQAGM-NGQGGFGGQYGGQGFGGADFGDFGDIFSSFFGGARQQVDPTAPQRGADLDYTMTIDFMDAIKGKTSEISYSRSTTCEVCKGSGAEKGTHPITCDKCGGSGMMTITQRSVLGMIQR 189          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_LACDA (Chaperone protein dnaJ OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 62/187 (33.16%), Postives = 90/187 (48.13%), Query Frame = 2
Query:  176 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPD---KGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHN-------PFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXYG-CQGTGMKITNRQIGLGMIQQ 703
            N  YY++LGVS+ A++ E+ KAYRK A K HPD   + G  EK+KE+ +AYEVL DP+KR  YDQ+G+  +  G GG G  +         F  F                    ++G D+ +T+ +   D   G T ++S SR+  C                   C G+GM    ++  LGMIQ+
Sbjct:    4 NRDYYDVLGVSRDASDAEISKAYRKLAKKYHPDLNHEAGAEEKYKEVNEAYEVLHDPQKRQQYDQFGQAGM-NGQGGFGGQYGGQGFGGADFGDFGDIFSSFFGGARQQVDPTAPQRGADLDYTMTIDFMDAIKGKTSEISYSRSTTCEVCKGSGAEKGTHPITCDKCGGSGMMTITQRSVLGMIQR 189          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_BACSU (Chaperone protein dnaJ OS=Bacillus subtilis GN=dnaJ PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 56/140 (40.00%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPD---KGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNPFD--IFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YYE+LGVSKSA++DE+KKAYRK + K HPD   + G  EKFKE+ +AYE LSD +KR  YDQ+G     +G GG G     F    F+                   +QG D+ +T+ +S ED   G    + + R   C
Sbjct:    6 YYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEAGSDEKFKEVKEAYETLSDDQKRAHYDQFGHTDPNQGFGGGGFGGGDFGGFGFDDIFSSIFGGGTRRRDPNAPRQGADLQYTMTLSFEDAAFGKETTIEIPREETC 145          
The following BLAST results are available for this feature:
BLAST of FC929868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_KLEP31.593e-2041.04Chaperone protein dnaJ OS=Klebsiella pneumoniae (s... [more]
DNAJ_HALMA1.593e-2033.16Chaperone protein dnaJ OS=Haloarcula marismortui G... [more]
DNAJ_STAAU2.081e-2037.93Chaperone protein dnaJ OS=Staphylococcus aureus GN... [more]
DNAJ_RHILW2.081e-2036.69Chaperone protein dnaJ OS=Rhizobium leguminosarum ... [more]
DNAJ_PSEP12.081e-2042.25Chaperone protein dnaJ OS=Pseudomonas putida (stra... [more]
DNAJ_LEPIN2.081e-2040.54Chaperone protein dnaJ OS=Leptospira interrogans G... [more]
DNAJ_LEPIC2.081e-2040.54Chaperone protein dnaJ OS=Leptospira interrogans s... [more]
DNAJ_LACDB2.081e-2033.16Chaperone protein dnaJ OS=Lactobacillus delbruecki... [more]
DNAJ_LACDA2.081e-2033.16Chaperone protein dnaJ OS=Lactobacillus delbruecki... [more]
DNAJ_BACSU2.081e-2040.00Chaperone protein dnaJ OS=Bacillus subtilis GN=dna... [more]

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Properties
Property NameValue
Genbank descriptionC34001C10EF PostHarvC1 Citrus clementina cDNA clone C34001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929868 ID=FC929868; Name=FC929868; organism=Citrus clementina; type=EST; length=720bp
GGAAATGCGCTTTGTGACGAGTGAGAGTTGAGAGGGACGATTGAAAATTC
TCCCTCTTAAGCCTCGTATCTCAAAATTCGCTCTCTCAGCTTCGAAATCT
TAGTTTAAAGGTTAGAATTGTATCACATACTGAAGTGATTCAATCATGTT
TGGTCGTACCCCAAGAAGAAGTAATAACACCAAGTATTATGAAATTCTTG
GTGTTTCGAAAAGTGCTACTGAAGATGAACTTAAGAAGGCATATAGAAAA
GCTGCTATGAAGAATCATCCCGACAAAGGTGGAGACCCTGAGAAGTTCAA
GGAGTTGGGTCAAGCTTATGAGGTTCTTTCTGATCCGGAGAAAAGAGATA
TTTATGATCAATATGGTGAAGATGCTCTTAAAGAAGGAATGGGAGGAGCT
GGGGCAGCTCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGG
AACTTTTGGTGCTGGTGGTAGCTCAAGAGGTAGAAGGCGGAAGCAAGGTG
AAGATGTTGTGCATACTCTGAAGGTCTCCTTGGAGGACTTGTACAATGGG
ACAACTAAGAAACTCTCTCTTTCAAGGAATATTCTGTGCCCTAAATGCAA
AGGGAAAGGTTCTAAAAGTGGGGCCTTGGGAAAATGTTATGGTTGCCAAG
GTACTGGAATGAAAATCACNAACAGGCAGATTGGACTTGGCATGATTCAA
CAGATGCAACATGTCTGTCC
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