FC929868

Overview
NameFC929868
Unique NameFC929868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_RHOCS (Chaperone protein dnaJ OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 54/145 (37.24%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNPFD------IFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YYE+LGV K A+ D+LKKAYRK AM+ HPD+  GD    +KFKE+ +AY+VL D +KR  YD++G  A + G GG GA    FD        +                    +G D+ + L+++LED + G T  + +  ++ C
Sbjct:    6 YYEVLGVQKGASADDLKKAYRKLAMQYHPDRNQGDKAAEQKFKEISEAYDVLKDDQKRAAYDRFGHAAFENGRGGPGAGAAGFDFNFGSGFADIFDEMFGEFMGRGRAGQTSNRGADLRYNLEITLEDAFKGATTTVRVPTSVAC 150          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMH (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 54/141 (38.30%), Postives = 76/141 (53.90%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPD---KGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG---GAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YYE+LG+SKSA+ DE+KKAYRK + + HPD   + G  EKFKE+ +AYE LSDP+KR  YDQYG     +G G   G G     F  FE                   +QG D+ +T+++  ++   G   ++ + R   C
Sbjct:    6 YYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGAGGGFGGGGFSGFEDIFDTFFGGGGRQQDPNAPRQGSDLQYTMRLKFKEAIFGKDAEIEIPREENC 146          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_LISIN (Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 54/141 (38.30%), Postives = 76/141 (53.90%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPD---KGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG---GAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YYE+LG+SKSA+ DE+KKAYRK + + HPD   + G  EKFKE+ +AYE LSDP+KR  YDQYG     +G G   G G     F  FE                   +QG D+ +T+++  ++   G   ++ + R   C
Sbjct:    6 YYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGAGGGFGGGGFSGFEDIFDTFFGGGGRQQDPNAPRQGSDLQYTMRLKFKEAIFGKDAEIEIPREENC 146          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_HALOH (Chaperone protein dnaJ OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 63/172 (36.63%), Postives = 82/172 (47.67%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE--------GMGGAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXYGCQGTGMK 664
            YYEILGVS+ A + E+KKAYR+ A K HPD   D     EKFKE+ +AYE+LSDP+KR  YDQYG   + E           G G   + FD+F                    + G D+ + +K+  ED   GTTKK+++ R   C                  C GTG K
Sbjct:    7 YYEILGVSRDADQKEIKKAYRRLARKYHPDINKDDPDAEEKFKEISEAYEILSDPDKRARYDQYGHAGINEEDFNFEDFAQRGFGGFDDIFDMF--------FGGGMGRRRRGPRPGADLQYRMKIPFEDAAFGTTKKITIPRTETCDT----------------CNGTGAK 154          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_EHRRG (Chaperone protein dnaJ OS=Ehrlichia ruminantium (strain Gardel) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 67/194 (34.54%), Postives = 94/194 (48.45%), Query Frame = 2
Query:  173 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GD---PEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNP------FDIF-EXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXYG-CQGTGMKITNRQIGLGMIQQMQHVC 718
            + + YY++LG+SK+AT +E+KKAYRK A+K HPDK  GD    EKFKEL +AY+VL D +KR  YD+YG  A  +G G  G   N        DIF +                     G D+   ++++LED +NGT   ++   ++ C                   C G G   T  Q G   I++  HVC
Sbjct:    2 SKSDYYDLLGLSKNATPEEIKKAYRKMALKYHPDKNPGDKAAEEKFKELSEAYDVLIDKDKRAAYDRYGHSAFSDGSGRGGFDFNSGFSTDFSDIFNDLFGGGFRGGRSSSKRQDGGTVGSDLRLDIEITLEDSFNGTKVPINYVTHVKCSSCSGSGSEGSVKSVQCNTCHGAGN--TRTQQGFFTIERTCHVC 193          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_CLONN (Chaperone protein dnaJ OS=Clostridium novyi (strain NT) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGE-DALKEGMGG-AGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YYE+LG+SK A++DE+KKAYRK AMK HPD+        EKFK++ +AY+VLSDP+K+  YDQ+G  D    G GG  G   +    FE                   ++G D+ +T+ ++ E+   G  K++S++RN  C
Sbjct:    6 YYEVLGLSKGASDDEIKKAYRKLAMKYHPDRNQGNKEAEEKFKDINEAYQVLSDPQKKANYDQFGSADFNGGGFGGFGGGGFSGMGGFEDIFDSFFGGGFSSRRRNGPERGADLEYTVSLTFEEAVFGVEKEISITRNEKC 146          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_AGRRK (Chaperone protein dnaJ OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 63/172 (36.63%), Postives = 85/172 (49.42%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPE----KFKELGQAYEVLSDPEKRDIYDQYGEDALKE-GMGGAGAAHNPF-------DIFEXXXXXXXXXXXXXXXXXXXKQ-GEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXYG-CQGTG 658
            YYE LGVS++A E ELK A+RK AM+ HPDK  D      KFKE+ +AYE L DP KR  YD+YG  A +  GMGG G     F       DIFE                   ++ G D+ + +++SLE+ + G T ++ +  +I C                 G CQG+G
Sbjct:    6 YYETLGVSRTADEKELKSAFRKLAMQFHPDKNPDDNDAERKFKEINEAYETLKDPNKRAAYDRYGHAAFEHGGMGGGGFGGGGFGGGGGFSDIFEDIFGEMMGGGRGRARSSGGRERGADLRYNMEISLEEAFTGKTAQIRVPTSITCDVCSGSGAKPGTQPKTCGTCQGSG 177          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_PSYA2 (Chaperone protein dnaJ OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 56/141 (39.72%), Postives = 76/141 (53.90%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNPFDIFE--XXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            +YEILGVSK+A   E+K+AYRK AMK HPD+  D     +KFKE   AYEVLS  EKR  YD+ G  A + GMGG G   N  DIF                      ++G D+ + ++++LE+   G  K++S +    C
Sbjct:    6 FYEILGVSKTADNKEVKRAYRKLAMKYHPDRNSDDPDAEDKFKEASMAYEVLSSEEKRSAYDRMGHAAFENGMGGGGGGGNFQDIFGDIFGNFGDIFGQSRGGGGGRSRRGSDLRYVIELTLEEAVRGCKKEISFTAPAPC 146          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEFS (Chaperone protein dnaJ OS=Pseudomonas fluorescens (strain SBW25) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 64/188 (34.04%), Postives = 91/188 (48.40%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGA---AHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXYGCQGTGMKITNRQI------GLGMIQQMQ 709
            YYE+LGV + ++E +LKKAYR+ AMK+HPD+  D     E FKE  +AYE LSDP KR  YDQYG   +   MGG GA     N  DIF                    ++G D+ +TL+++LE+   GT+  + +   + C                  C G+G K  +  I      G+G ++  Q
Sbjct:    6 YYEVLGVERGSSEADLKKAYRRLAMKHHPDRNPDSKESEEMFKEANEAYECLSDPNKRAAYDQYGHAGVDPSMGGGGAGFGGQNFSDIF-GDVFSDFFGGGRGGQRGGAQRGSDLRYTLELNLEEAVRGTSVNIRVPTLVNCKP----------------CDGSGAKKGSSPITCPTCGGIGQVRMQQ 176          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_FUSNN (Chaperone protein dnaJ OS=Fusobacterium nucleatum subsp. nucleatum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 65/199 (32.66%), Postives = 92/199 (46.23%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD---------PEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNP-----FDIF-------EXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXYGCQGTGMKITNRQIGLGMIQQMQHVC 718
            YYE+LG+ KSA+E+++KKAYRKAAMK HPDK  +          EKFKE+ +AY++LSD +K+  YDQ+G  A ++G  G G   N       DIF                           + G D+ + L+++LE+   G  K +   R   C                  C G G   T ++  LG + Q Q VC
Sbjct:    6 YYEVLGIDKSASENDIKKAYRKAAMKYHPDKFANASDAEKKDAEEKFKEINEAYQILSDSQKKQQYDQFGHAAFEQGGAGFGGGFNAGGFDFGDIFGDIFGGGGFGGFEGFSGFGGSSRRSYVEPGNDLRYNLEITLEEAAKGVEKTIKYKRTGKCENCHGTGGEDDKMKTCPTCNGQGTIRTQQRTILG-VMQSQSVC 203          
The following BLAST results are available for this feature:
BLAST of FC929868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_RHOCS2.717e-2037.24Chaperone protein dnaJ OS=Rhodospirillum centenum ... [more]
DNAJ_LISMH2.717e-2038.30Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]
DNAJ_LISIN2.717e-2038.30Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ... [more]
DNAJ_HALOH2.717e-2036.63Chaperone protein dnaJ OS=Halothermothrix orenii (... [more]
DNAJ_EHRRG2.717e-2034.54Chaperone protein dnaJ OS=Ehrlichia ruminantium (s... [more]
DNAJ_CLONN2.717e-2039.01Chaperone protein dnaJ OS=Clostridium novyi (strai... [more]
DNAJ_AGRRK2.717e-2036.63Chaperone protein dnaJ OS=Agrobacterium radiobacte... [more]
DNAJ_PSYA23.549e-2039.72Chaperone protein dnaJ OS=Psychrobacter arcticus (... [more]
DNAJ_PSEFS3.549e-2034.04Chaperone protein dnaJ OS=Pseudomonas fluorescens ... [more]
DNAJ_FUSNN3.549e-2032.66Chaperone protein dnaJ OS=Fusobacterium nucleatum ... [more]

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Properties
Property NameValue
Genbank descriptionC34001C10EF PostHarvC1 Citrus clementina cDNA clone C34001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929868 ID=FC929868; Name=FC929868; organism=Citrus clementina; type=EST; length=720bp
GGAAATGCGCTTTGTGACGAGTGAGAGTTGAGAGGGACGATTGAAAATTC
TCCCTCTTAAGCCTCGTATCTCAAAATTCGCTCTCTCAGCTTCGAAATCT
TAGTTTAAAGGTTAGAATTGTATCACATACTGAAGTGATTCAATCATGTT
TGGTCGTACCCCAAGAAGAAGTAATAACACCAAGTATTATGAAATTCTTG
GTGTTTCGAAAAGTGCTACTGAAGATGAACTTAAGAAGGCATATAGAAAA
GCTGCTATGAAGAATCATCCCGACAAAGGTGGAGACCCTGAGAAGTTCAA
GGAGTTGGGTCAAGCTTATGAGGTTCTTTCTGATCCGGAGAAAAGAGATA
TTTATGATCAATATGGTGAAGATGCTCTTAAAGAAGGAATGGGAGGAGCT
GGGGCAGCTCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGG
AACTTTTGGTGCTGGTGGTAGCTCAAGAGGTAGAAGGCGGAAGCAAGGTG
AAGATGTTGTGCATACTCTGAAGGTCTCCTTGGAGGACTTGTACAATGGG
ACAACTAAGAAACTCTCTCTTTCAAGGAATATTCTGTGCCCTAAATGCAA
AGGGAAAGGTTCTAAAAGTGGGGCCTTGGGAAAATGTTATGGTTGCCAAG
GTACTGGAATGAAAATCACNAACAGGCAGATTGGACTTGGCATGATTCAA
CAGATGCAACATGTCTGTCC
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