FC929868

Overview
NameFC929868
Unique NameFC929868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_CARHZ (Chaperone protein dnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 61/148 (41.22%), Postives = 81/148 (54.73%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALK-----EGMGGAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQ----GEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YYEILGV+++AT +E+KKAYRK A K HPD   D     EKFKE+ +AYEVLSDPEKR  YDQ+G   +      +G  G GA  N  DIF                    +Q    G+D+   L+++LE+   G  K+L ++R   C
Sbjct:    5 YYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRARYDQFGHAGVDGNFAGQGGFGGGAGINFEDIFSGFGGFGDLFDMVFGSGRKARQGPVPGDDIEAVLELTLEEAVFGGEKELRVTRTETC 152          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_AGRVS (Chaperone protein dnaJ OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 59/149 (39.60%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPE---KFKELGQAYEVLSDPEKRDIYDQYGEDALKEG-----MGGAGAAHNPF-----DIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            +YE LGVSK+A E ELK A+RK AMK HPDK  GD E   KFKE+ +AYE L DP+KR  YD++G  A ++G      GG G A   F     DIF                    ++G D+ + +++SLE+ + G T ++ +  +I C
Sbjct:    6 FYETLGVSKTADEKELKSAFRKLAMKFHPDKNPGDAESERKFKEINEAYETLKDPQKRAAYDRFGHAAFEQGGMGSAGGGGGFAGGGFSDIFEDIFGEMMGGGRGGNARGRSTGGRERGADLRYNMEISLEEAFTGKTAQIRVPTSITC 154          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_SHISS (Chaperone protein dnaJ OS=Shigella sonnei (strain Ss046) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPE---KFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSL 571
            YYEILGVSK+A E E+KKAY++ AMK HPD+  GD E   KFKE+ +AYEVL+D +KR  YDQYG  A ++G  G G      D  +                    +G D+ + ++++LE+   G TK++ +
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRI 138          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIDS (Chaperone protein dnaJ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPE---KFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSL 571
            YYEILGVSK+A E E+KKAY++ AMK HPD+  GD E   KFKE+ +AYEVL+D +KR  YDQYG  A ++G  G G      D  +                    +G D+ + ++++LE+   G TK++ +
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRI 138          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIBS (Chaperone protein dnaJ OS=Shigella boydii serotype 4 (strain Sb227) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPE---KFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSL 571
            YYEILGVSK+A E E+KKAY++ AMK HPD+  GD E   KFKE+ +AYEVL+D +KR  YDQYG  A ++G  G G      D  +                    +G D+ + ++++LE+   G TK++ +
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRI 138          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIB3 (Chaperone protein dnaJ OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPE---KFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSL 571
            YYEILGVSK+A E E+KKAY++ AMK HPD+  GD E   KFKE+ +AYEVL+D +KR  YDQYG  A ++G  G G      D  +                    +G D+ + ++++LE+   G TK++ +
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRI 138          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_RHOP2 (Chaperone protein dnaJ OS=Rhodopseudomonas palustris (strain HaA2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 67/191 (35.08%), Postives = 93/191 (48.69%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPE---KFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG------GAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXYGCQGTGMKITNRQI------GLGMIQQMQ 709
            YYE L V +SA E  LK A+RK AMK HPD+  GD     KFKE+ +AYEVL D +KR  YD+YG  A ++GMG      GAG A +  DIFE                   ++G D+ + ++++LED Y G T ++ +  ++ C                  C GTG K   +        G G ++Q Q
Sbjct:    8 YYETLEVERSADESTLKSAFRKLAMKWHPDRNPGDASSEIKFKEINEAYEVLKDGDKRAAYDRYGHAAFEQGMGGGGPGFGAGFASSFSDIFE----DLFGMAGQRGRGTGRERGADLRYNMEITLEDAYKGKTAQIEIPVSVTCE----------------SCSGTGAKAGTKPKTCSTCGGAGRVRQAQ 178          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_NITEC (Chaperone protein dnaJ OS=Nitrosomonas eutropha (strain C91) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 61/142 (42.96%), Postives = 78/142 (54.93%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAA--HNPF-DIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YYE+LGV + A E ELKK YRK AMK HPD+  GD    E+FKE+ +AYEVLSD  KR  YDQ+G   L  G+GGAGA    + F DIF                     +G D+ + L+++LE    GT  K+ + R   C
Sbjct:    6 YYEVLGVGRDADESELKKVYRKLAMKYHPDRNAGDAKAEERFKEIKEAYEVLSDSNKRAAYDQFGHAGLNGGVGGAGAQGFSDAFSDIFS------DLFGMRGGGRSSVHRGADLRYNLEITLEQAARGTETKIRIPRQEAC 141          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_JANMA (Chaperone protein dnaJ OS=Janthinobacterium sp. (strain Marseille) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 54/129 (41.86%), Postives = 73/129 (56.59%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQ---GEDVVHTLKVSLEDLYNG 550
            +YEILGV KSA+++E+KKAYRK AMK+HPD+  D     +KFKE  +AYE+LSDP+KRD YD+YG   +   MGG G      D F                     Q   G D+ + L+++LE   +G
Sbjct:    6 FYEILGVGKSASDEEIKKAYRKLAMKHHPDRNPDSKGAEDKFKEAKEAYEMLSDPQKRDAYDRYGHAGVDPNMGGGGGGGGFADAFGDIFGDIFGQAGGGRGGRGGPQVYRGADLRYNLEITLEQAAHG 134          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_HALWD (Chaperone protein dnaJ OS=Haloquadratum walsbyi (strain DSM 16790) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 67/201 (33.33%), Postives = 98/201 (48.76%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE-----GMGGAG------AAHNPF-----------DIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXY-GCQGTGMKITNRQIGLGMIQQMQ 709
            +Y++LGVS++A  D++K+AYRK A K HPD   DP   EKFK++ +A EVL+D EKR +YDQ G D  ++     G+GG G      A  +PF           DIFE                   +QG+++   +++ LE++Y G  K+ ++ R   CP                  C G G   T R+  LG +QQ Q
Sbjct:    5 FYDVLGVSRNADGDDIKQAYRKKAAKYHPDVSDDPNAEEKFKKIKKAKEVLTDGEKRQMYDQLGHDRFQQAEKRGGVGGGGNSSGGSARGDPFGGMGGQGSPFGDIFE---QFFGGGQGQRRQGNRPRQGQNLQTRVQLDLEEVYTGVEKQFTVRRPEKCPDCNGRGHPSDADVRTCPQCNGQGQTTTVRETALGRVQQTQ 202          
The following BLAST results are available for this feature:
BLAST of FC929868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_CARHZ3.549e-2041.22Chaperone protein dnaJ OS=Carboxydothermus hydroge... [more]
DNAJ_AGRVS3.549e-2039.60Chaperone protein dnaJ OS=Agrobacterium vitis (str... [more]
DNAJ_SHISS4.635e-2040.60Chaperone protein dnaJ OS=Shigella sonnei (strain ... [more]
DNAJ_SHIDS4.635e-2040.60Chaperone protein dnaJ OS=Shigella dysenteriae ser... [more]
DNAJ_SHIBS4.635e-2040.60Chaperone protein dnaJ OS=Shigella boydii serotype... [more]
DNAJ_SHIB34.635e-2040.60Chaperone protein dnaJ OS=Shigella boydii serotype... [more]
DNAJ_RHOP24.635e-2035.08Chaperone protein dnaJ OS=Rhodopseudomonas palustr... [more]
DNAJ_NITEC4.635e-2042.96Chaperone protein dnaJ OS=Nitrosomonas eutropha (s... [more]
DNAJ_JANMA4.635e-2041.86Chaperone protein dnaJ OS=Janthinobacterium sp. (s... [more]
DNAJ_HALWD4.635e-2033.33Chaperone protein dnaJ OS=Haloquadratum walsbyi (s... [more]

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Properties
Property NameValue
Genbank descriptionC34001C10EF PostHarvC1 Citrus clementina cDNA clone C34001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929868 ID=FC929868; Name=FC929868; organism=Citrus clementina; type=EST; length=720bp
GGAAATGCGCTTTGTGACGAGTGAGAGTTGAGAGGGACGATTGAAAATTC
TCCCTCTTAAGCCTCGTATCTCAAAATTCGCTCTCTCAGCTTCGAAATCT
TAGTTTAAAGGTTAGAATTGTATCACATACTGAAGTGATTCAATCATGTT
TGGTCGTACCCCAAGAAGAAGTAATAACACCAAGTATTATGAAATTCTTG
GTGTTTCGAAAAGTGCTACTGAAGATGAACTTAAGAAGGCATATAGAAAA
GCTGCTATGAAGAATCATCCCGACAAAGGTGGAGACCCTGAGAAGTTCAA
GGAGTTGGGTCAAGCTTATGAGGTTCTTTCTGATCCGGAGAAAAGAGATA
TTTATGATCAATATGGTGAAGATGCTCTTAAAGAAGGAATGGGAGGAGCT
GGGGCAGCTCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGG
AACTTTTGGTGCTGGTGGTAGCTCAAGAGGTAGAAGGCGGAAGCAAGGTG
AAGATGTTGTGCATACTCTGAAGGTCTCCTTGGAGGACTTGTACAATGGG
ACAACTAAGAAACTCTCTCTTTCAAGGAATATTCTGTGCCCTAAATGCAA
AGGGAAAGGTTCTAAAAGTGGGGCCTTGGGAAAATGTTATGGTTGCCAAG
GTACTGGAATGAAAATCACNAACAGGCAGATTGGACTTGGCATGATTCAA
CAGATGCAACATGTCTGTCC
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