FC929868

Overview
NameFC929868
Unique NameFC929868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15056 contig Ccv1_Contig15056:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: SCJ1_YEAST (DnaJ-related protein SCJ1 OS=Saccharomyces cerevisiae GN=SCJ1 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.139e-26
Identity = 72/189 (38.10%), Postives = 100/189 (52.91%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPE----KFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG-------GAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXYGCQGTGMKITNRQIGLGMIQQMQHVC 718
            YY IL + K ATE E+K AYR+ + K HPDK    E    KF E+G+AY+VLSDPEK+ IYDQ+G DA+K G G       GAG  H+PFDIFE                   ++G  +    K+SL+  Y+G++ + +L+ N  C                  CQG G+ I   ++G+ M QQ+Q +C
Sbjct:   24 YYAILEIDKDATEKEIKSAYRQLSKKYHPDKNAGSEEAHQKFIEVGEAYDVLSDPEKKKIYDQFGADAVKNGGGGGGPGGPGAGGFHDPFDIFERMFQGGHGGPGGGFGQRQRQRGPMIKVQEKLSLKQFYSGSSIEFTLNLNDECDACHGSGSADGKLAQCPDCQGRGVIIQVLRMGI-MTQQIQQMC 211          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNJA1_DICDI (DnaJ homolog subfamily A member 1 homolog OS=Dictyostelium discoideum GN=dnaja1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.314e-26
Identity = 77/210 (36.67%), Postives = 99/210 (47.14%), Query Frame = 2
Query:  182 KYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP------EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE----------------GMGGAGAAH-------NPFDIFE-XXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXY-GCQGTGMKITNRQIGLGMIQQMQHVC 718
            +YYE LGV    TEDELKKAYRK A+K HPDK   P       KFK++ +AYEVLSDPEKR +YD YG + +KE                G GG G          + F  F                     ++GED+ H +  SLE+LYNG   K+S+SR+ +C                   C G+      +Q+G GMIQQ+Q  C
Sbjct:    6 EYYERLGVKPDCTEDELKKAYRKMAVKYHPDKNQGPGKDAAEAKFKDISEAYEVLSDPEKRKMYDSYGSEGMKESGFHASSAEDLFSHFFGAGGGGGGFSFGGGGGDDFGGFSFGNMGGMGGMGGMGGGHKKRRKGEDIEHEMNRSLEELYNGKLVKISISRDEVCKTCKGSGSNKPGVTTTCPTCNGSRYVFQKKQVGPGMIQQVQTAC 215          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNJB4_MOUSE (DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 71/184 (38.59%), Postives = 92/184 (50.00%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGA------------GAAH----------NPFDIF-----------------------EXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCP 592
            YY ILG+ K AT++++KKAYRK A+K HPDK   P   EKFKE+ +AYEVLSDP+KR+IYDQ+GE+ LK G GG             G  H          NPF+IF                                           KQ   ++H LKVSLE++Y+G TK++ +SR  L P
Sbjct:    5 YYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRRMGGGRDSEEMEIDGDPFSAFGFSMNGYPRDRNSVGPSRLKQDPPIIHELKVSLEEIYSGCTKRMKISRKRLNP 188          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNJB5_MOUSE (DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 70/195 (35.90%), Postives = 93/195 (47.69%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAA----------------------HNPFDIFEXXXXXXXXXXXXXXXXXXXKQGED----------------------------------VVHTLKVSLEDLYNGTTKKLSLSRNILCP 592
            YY+ILG+   A EDE+KKAYRK A+K HPDK  +P   EKFKE+ +AY+VLSDP+KR +YDQYGE+ LK G G +G +                       NPFDIF                     + ED                                  VVH L+VSLE++Y+G+TK++ ++R  L P
Sbjct:    5 YYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRSLYDQYGEEGLKTGGGSSGGSGGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPFSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNP 199          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNJB5_HUMAN (DnaJ homolog subfamily B member 5 OS=Homo sapiens GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 70/195 (35.90%), Postives = 93/195 (47.69%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAA----------------------HNPFDIFEXXXXXXXXXXXXXXXXXXXKQGED----------------------------------VVHTLKVSLEDLYNGTTKKLSLSRNILCP 592
            YY+ILG+   A EDE+KKAYRK A+K HPDK  +P   EKFKE+ +AY+VLSDP+KR +YDQYGE+ LK G G +G +                       NPFDIF                     + ED                                  VVH L+VSLE++Y+G+TK++ ++R  L P
Sbjct:    5 YYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKTGGGTSGGSSGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPFSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNP 199          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNJB5_BOVIN (DnaJ homolog subfamily B member 5 OS=Bos taurus GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 69/195 (35.38%), Postives = 93/195 (47.69%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAA----------------------HNPFDIFEXXXXXXXXXXXXXXXXXXXKQGED----------------------------------VVHTLKVSLEDLYNGTTKKLSLSRNILCP 592
            YY+ILG+   A EDE+KKAYRK A+K HPDK  +P   EKFKE+ +AY+VLSDP+KR +YDQYGE+ LK G G +G +                       NPFDIF                     + +D                                  VVH L+VSLE++Y+G+TK++ ++R  L P
Sbjct:    5 YYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKTGGGSSGGSSGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSARPFSGFDPDDMDVDEDDDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNP 199          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_STAES (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 12228) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 56/138 (40.58%), Postives = 83/138 (60.14%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPD---KGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YYE+LGV+KSA++DE+KKAYRK + K HPD   + G  EKFKE+ +AYEVLSD  KR  YDQ+G D  + G G  G   + F  FE                   ++G+D+ +T+ ++ E+   GT K++S+ +++ C
Sbjct:    6 YYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRANYDQFGHDGPQGGFGSQGFGGSDFGGFEDIFSSFFGGGSRQRDPNAPRKGDDLQYTMTITFEEAVFGTKKEISIKKDVTC 143          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_STAEQ (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 56/138 (40.58%), Postives = 83/138 (60.14%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPD---KGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNPFDIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YYE+LGV+KSA++DE+KKAYRK + K HPD   + G  EKFKE+ +AYEVLSD  KR  YDQ+G D  + G G  G   + F  FE                   ++G+D+ +T+ ++ E+   GT K++S+ +++ C
Sbjct:    6 YYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRVNYDQFGHDGPQGGFGSQGFGGSDFGGFEDIFSSFFGGGSRQRDPNAPRKGDDLQYTMTITFEEAVFGTKKEISIKKDVTC 143          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIBY (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain AYE) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 58/142 (40.85%), Postives = 82/142 (57.75%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNPF---DIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YYE+LGVSK+A++DE+KKAYRK AMK HPD+  D     EKFKE  +AYE+LSD EKR +YD+ G +A + G GGAG     F   DIF                    ++G D+ + ++++LE+   G  K ++ +    C
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEEKFKEASEAYEILSDSEKRSMYDRMGHNAFEGGFGGAGGGFGGFSAEDIFSQFGDIFGGAFGGGGRQQRQRRGSDLRYVMELTLEEAVKGVKKTITFTAPAPC 147          
BLAST of FC929868 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIBT (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 58/142 (40.85%), Postives = 82/142 (57.75%), Query Frame = 2
Query:  185 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAAHNPF---DIFEXXXXXXXXXXXXXXXXXXXKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILC 589
            YYE+LGVSK+A++DE+KKAYRK AMK HPD+  D     EKFKE  +AYE+LSD EKR +YD+ G +A + G GGAG     F   DIF                    ++G D+ + ++++LE+   G  K ++ +    C
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEEKFKEASEAYEILSDSEKRSMYDRMGHNAFEGGFGGAGGGFGGFSAEDIFSQFGDIFGGAFGGGGRQQRQRRGSDLRYVMELTLEEAVKGVKKTITFTAPAPC 147          
The following BLAST results are available for this feature:
BLAST of FC929868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SCJ1_YEAST1.139e-2638.10DnaJ-related protein SCJ1 OS=Saccharomyces cerevis... [more]
DNJA1_DICDI3.314e-2636.67DnaJ homolog subfamily A member 1 homolog OS=Dicty... [more]
DNJB4_MOUSE3.664e-2538.59DnaJ homolog subfamily B member 4 OS=Mus musculus ... [more]
DNJB5_MOUSE8.163e-2535.90DnaJ homolog subfamily B member 5 OS=Mus musculus ... [more]
DNJB5_HUMAN1.818e-2435.90DnaJ homolog subfamily B member 5 OS=Homo sapiens ... [more]
DNJB5_BOVIN2.375e-2435.38DnaJ homolog subfamily B member 5 OS=Bos taurus GN... [more]
DNAJ_STAES4.051e-2440.58Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_STAEQ5.291e-2440.58Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_ACIBY9.025e-2440.85Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]
DNAJ_ACIBT9.025e-2440.85Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]

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Properties
Property NameValue
Genbank descriptionC34001C10EF PostHarvC1 Citrus clementina cDNA clone C34001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929868 ID=FC929868; Name=FC929868; organism=Citrus clementina; type=EST; length=720bp
GGAAATGCGCTTTGTGACGAGTGAGAGTTGAGAGGGACGATTGAAAATTC
TCCCTCTTAAGCCTCGTATCTCAAAATTCGCTCTCTCAGCTTCGAAATCT
TAGTTTAAAGGTTAGAATTGTATCACATACTGAAGTGATTCAATCATGTT
TGGTCGTACCCCAAGAAGAAGTAATAACACCAAGTATTATGAAATTCTTG
GTGTTTCGAAAAGTGCTACTGAAGATGAACTTAAGAAGGCATATAGAAAA
GCTGCTATGAAGAATCATCCCGACAAAGGTGGAGACCCTGAGAAGTTCAA
GGAGTTGGGTCAAGCTTATGAGGTTCTTTCTGATCCGGAGAAAAGAGATA
TTTATGATCAATATGGTGAAGATGCTCTTAAAGAAGGAATGGGAGGAGCT
GGGGCAGCTCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGG
AACTTTTGGTGCTGGTGGTAGCTCAAGAGGTAGAAGGCGGAAGCAAGGTG
AAGATGTTGTGCATACTCTGAAGGTCTCCTTGGAGGACTTGTACAATGGG
ACAACTAAGAAACTCTCTCTTTCAAGGAATATTCTGTGCCCTAAATGCAA
AGGGAAAGGTTCTAAAAGTGGGGCCTTGGGAAAATGTTATGGTTGCCAAG
GTACTGGAATGAAAATCACNAACAGGCAGATTGGACTTGGCATGATTCAA
CAGATGCAACATGTCTGTCC
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