FC929869

Overview
NameFC929869
Unique NameFC929869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13706 contig Ccv1_Contig13706:776..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929869 vs. ExPASy Swiss-Prot
Match: IF2G_THEAC (Translation initiation factor 2 subunit gamma OS=Thermoplasma acidophilum GN=eif2g PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34
Identity = 78/222 (35.14%), Postives = 125/222 (56.31%), Query Frame = 1 
Query:   13 AINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVK 678
            AI  +  I  F++G++A+ AP++P+SA    NID + E I K IP P+ N  D P M + RSFD+N+PG  V +++GGV GGS+ +G   +   IE+ PGI     +  +    + + +VSL A +       PGGL  +GT +DP LT+ D   G++ G VG +P V   + +   LL+R++     GS+++  V  +  +E LM  + + +T   V A+K
Sbjct:  154 AIESYREIKNFVKGSIAENAPIIPVSAYHSTNIDALFEAIEKYIPSPKFNENDDPIMYIARSFDINRPGTPVSELKGGVIGGSLTQGEFALGDEIEIVPGIQTTKGNKTV-WNNVTTEVVSLMAGKYSYDRIRPGGLAAIGTKLDPFLTKGDAFTGRIAGHVGKVPPVAFSMRLESHLLKRVV-----GSDQELNVEPIRPKETLMFTVATANTVGVVNAMK 369
The following BLAST results are available for this feature:
BLAST of FC929869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
IF2G_THEAC9.042e-3435.14Translation initiation factor 2 subunit gamma OS=T... [more]

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Properties
Property NameValue
Genbank descriptionC34001C11EF PostHarvC1 Citrus clementina cDNA clone C34001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929869 ID=FC929869; Name=FC929869; organism=Citrus clementina; type=EST; length=692bp
CAGGAAAATGTGGCCATCAACCAACATGAAGCTATCATGAAGTTTATCCA
GGGAACTGTTGCTGATGGCGCACCAGTGGTTCCCATTTCTGCACAGCTAA
AGTACAATATTGATGTTGTATGCGAATATATTGTGAAAAAGATTCCCATT
CCAGAGAGGAACTTTATTGATCCACCAAATATGATTGTAATTCGATCTTT
TGATGTCAATAAACCTGGTTTTGAGGTTGATGATATAAGAGGTGGTGTTG
CTGGTGGCAGCATCCTGAGGGGTGTTCTGAAGGTGAACCAATTTATTGAG
GTTCGTCCCGGTATTGTTGTCAAAGATGAGTCCGGGAACATCAAGTGCAC
ACCTATATACTCGAGAATAGTTTCATTGTTTGCTGAGCAAAATGAGTTAC
AATTTGCAGTTCCAGGAGGTCTCATTGGGGTTGGTACAACCATGGATCCT
ACTTTGACACGGGCGGATAGACTGGTGGGTCAGGTTCTTGGGGAGGTTGG
GTCACTCCCTGAAGTTTTTGTCGAGCTTGAGGTGAACTTCTTTCTATTGC
GCCGGCTTTTGGGTGTGAGGACAAAGGGCTCAGAAAGGCAGGGAAAGGTC
TCCAAACTTGCCAAACAAGAGATTCTTATGCTGAACATAGGATCTATGTC
GACCGGAGCTAGAGTTCTTGCTGTAAAGAATGATTTGGCAAA
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