FC929873

Overview
NameFC929873
Unique NameFC929873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929873 vs. ExPASy Swiss-Prot
Match: EPHB3_XENLA (Ephrin type-B receptor 3 OS=Xenopus laevis GN=ephb3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 62/205 (30.24%), Postives = 102/205 (49.76%), Query Frame = 2
Query:  149 FSYNELKEATGGFKEEL-----------GRGSFGIVYKGVLKSASGKA--IAVKKLDR-LAQEREREFKSEVSAIGRTHHKNLVQLLGFCDEALNRLLVYEFMGNGTLANLI------FAIPKPDWNLRVRISLEIARGLVYLHEECNVPIIHCDIKPQNILLDNYFSAKISDFGLSKLLLSDQS-RTHTMIRGTR---GYVAPE 691
            F+Y +  EA   F +E+           G G FG V +G LK A  +   +A+K L     +++ R+F  E S +G+  H N+++L G    +   +++ EFM NG L + +      F + +      V I   IA G+ YL E   +  +H D+  +NIL+++    K+SDFGLS+ L + +S  T+T   G +    + APE
Sbjct:  588 FTYEDPNEAVRDFAKEIDISCVKIEEVIGAGEFGEVCRGKLKQAGRREQFVAIKTLKAGYTEQQRRDFLGEASIMGQFDHPNIIRLEGVVTRSRPVMILTEFMENGALDSFLRMNDGQFTVIQ-----LVGILRGIASGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLENSRSDPTYTSALGGKIPIRWTAPE 784          
BLAST of FC929873 vs. ExPASy Swiss-Prot
Match: EPHB2_MOUSE (Ephrin type-B receptor 2 OS=Mus musculus GN=Ephb2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 64/208 (30.77%), Postives = 103/208 (49.52%), Query Frame = 2
Query:  149 FSYNELKEATGGFKEEL-----------GRGSFGIVYKGVLKSASGKAI--AVKKLDR-LAQEREREFKSEVSAIGRTHHKNLVQLLGFCDEALNRLLVYEFMGNGTLANLI------FAIPKPDWNLRVRISLEIARGLVYLHEECNVPIIHCDIKPQNILLDNYFSAKISDFGLSKLLLSDQS-RTHTMIRGTR---GYVAPEWVQ 700
            F+Y +  EA   F +E+           G G FG V  G LK    + I  A+K L     +++ R+F SE S +G+  H N++ L G   ++   +++ EFM NG+L + +      F + +    LR      IA G+ YL    ++  +H D+  +NIL+++    K+SDFGLS+ L  D S  T+T   G +    + APE +Q
Sbjct:  608 FTYEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLR-----GIAAGMKYL---ADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQ 807          
BLAST of FC929873 vs. ExPASy Swiss-Prot
Match: EPHB2_HUMAN (Ephrin type-B receptor 2 OS=Homo sapiens GN=EPHB2 PE=1 SV=5)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 64/208 (30.77%), Postives = 103/208 (49.52%), Query Frame = 2
Query:  149 FSYNELKEATGGFKEEL-----------GRGSFGIVYKGVLKSASGKAI--AVKKLDR-LAQEREREFKSEVSAIGRTHHKNLVQLLGFCDEALNRLLVYEFMGNGTLANLI------FAIPKPDWNLRVRISLEIARGLVYLHEECNVPIIHCDIKPQNILLDNYFSAKISDFGLSKLLLSDQS-RTHTMIRGTR---GYVAPEWVQ 700
            F+Y +  EA   F +E+           G G FG V  G LK    + I  A+K L     +++ R+F SE S +G+  H N++ L G   ++   +++ EFM NG+L + +      F + +    LR      IA G+ YL    ++  +H D+  +NIL+++    K+SDFGLS+ L  D S  T+T   G +    + APE +Q
Sbjct:  600 FTYEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLR-----GIAAGMKYL---ADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQ 799          
BLAST of FC929873 vs. ExPASy Swiss-Prot
Match: DKF2_CAEEL (Serine/threonine-protein kinase dkf-2 OS=Caenorhabditis elegans GN=dkf-2 PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 58/200 (29.00%), Postives = 100/200 (50.00%), Query Frame = 2
Query:  116 DSSTSETNLRLFSYNELKEATGGFKEE-LGRGSFGIVYKGVLKSASGKAIAVKKLDRLAQERERE--FKSEVSAIGRTHHKNLVQLLGFCDEALNRLLVYEFMGNGTLANLIFAIPKPDWNLRVRISL--EIARGLVYLHEECNVPIIHCDIKPQNILLD---NYFSAKISDFGLSKLLLSDQSRTHTMIRGTRGYVAPE 691
            +  T     ++ + +E  +    F EE LG G FG VY G+ +  +G+ +AVK +D+L     +E   ++EV  + +  H  +V  +    E  +R+ V      G +  +I +  K   + R    L  +I   L YLH   ++ I+HCD+KP+NILL+   ++   K+ DFG ++++     R   +  GT  Y+APE
Sbjct:  748 EGETGHLGAKIQTEHEFSQLYQIFAEEVLGSGQFGTVYGGIHRR-NGQHVAVKLIDKLKFPPNKEDLLRAEVQILEKVDHPGVVHFMQML-ETTDRIFVVMEKLKGDMLEMILSSEKGRLSERTTQFLVAQILEALRYLH---HLNIVHCDLKPENILLNSNSDFPQVKLCDFGFARIIGEKSFRRSVV--GTPAYLAPE 940          
BLAST of FC929873 vs. ExPASy Swiss-Prot
Match: Y5168_ARATH (Probably inactive receptor-like protein kinase At5g41680 OS=Arabidopsis thaliana GN=At5g41680 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 55/205 (26.83%), Postives = 93/205 (45.37%), Query Frame = 2
Query:  161 ELKEATGGFKEELGRGSFGIVYKGVLKSASGKAIAVKKLDRLAQEREREFKSEVSAIGRTHHKNLVQLLGFCDEALNRLLVYEFMGNGTLANLI-----FAIPKP-----------------------DWNLRVRISLEIARGLVYLHEECNVPIIHCDIKPQNILLDNYFSAKISDFGLSKLLLSDQSRTHTMIRGTRGYVAPE 691
            +L +      E LG+G+    YK  ++  +   + VK+L+ +   R REF+ ++  +GR  H N+ +L  +    +++L VY +   G L  ++     F IP                         DW  R+RI++  ARGL  +HE  +   +H +IK  NI  ++     I D GL+ +    +S   T +R + GY APE
Sbjct:   53 DLDDLLAASAEILGKGAHVTTYKVAVEDTA--TVVVKRLEEVVVGR-REFEQQMEIVGRIRHDNVAELKAYYYSKIDKLAVYSYYSQGNLFEMLHGKLSFCIPLSMLLWYAVSKTNNSTFAGESQVPLDWESRLRIAIGAARGLAIIHEADDGKFVHGNIKSSNIFTNSKCYGCICDLGLTHI---TKSLPQTTLRSS-GYHAPE 250          
BLAST of FC929873 vs. ExPASy Swiss-Prot
Match: STK6_RAT (Serine/threonine-protein kinase 6 OS=Rattus norvegicus GN=Aurka PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 55/178 (30.90%), Postives = 85/178 (47.75%), Query Frame = 2
Query:  197 LGRGSFGIVYKGVLKSASGKAIAVKKLDRLAQER---EREFKSEVSAIGRTHHKNLVQLLGFCDEALNRLLVYEFMGNGTLANLIFAIPKPDWNLRVRISLEIARGLVYLHEECNVPIIHCDIKPQNILLDNYFSAKISDFGLSKLLLSDQSRTHTMIRGTRGYVAPEWVQMHLSQPK 721
            LG+G FG VY    K  S   +A+K L ++  E+   E + + EV       H N+++L G+  +A    L+ E+   GT+   +  + K D         E+A  L Y H +    +IH DIKP+N+LL +    KI+DFG S   +   S   T + GT  Y  PE ++  +   K
Sbjct:  132 LGKGKFGNVYLAREKQ-SKFILALKVLFKVQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSNGELKIADFGWS---VHAPSSRRTTLCGTLDYQPPEMIEGRMHDEK 302          
BLAST of FC929873 vs. ExPASy Swiss-Prot
Match: ROCO7_DICDI (Probable serine/threonine-protein kinase roco7 OS=Dictyostelium discoideum GN=roco7 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 55/161 (34.16%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  185 FKEELGRGSFGIVYKGVLKSASGKAIAVKKLD-----RLAQEREREFKSEVSAIGRTHHKNLVQLLG-----FCDEALNRLLVYEFMGNGTLANLIFAIPKP-DWNLRVRISLEIARGLVYLHEECNVPIIHCDIKPQNILL-----DNYFSAKISDFGLS 619
            F  +LG GS+  VY+G+    +G  +A+K L+         E+ REF++E    G   H N V L+G     FC       LV E +  G LA  I    +   W   +++++++A+G+ +LH  C   I+H D+K  NILL     DN   AK+ DFGLS
Sbjct: 1777 FGPQLGSGSYANVYRGIW---NGSEVAIKVLNFDDGHANTTEKYREFRNEAHITGELRHANTVSLMGVSLSPFC-------LVTELLQYGDLAKFIRNTAETFSWGTVLKLAIDVAKGMNFLH-SCKPMIVHRDLKSANILLGGSSMDN-LVAKVGDFGLS 1925          
BLAST of FC929873 vs. ExPASy Swiss-Prot
Match: MET_NEONE (Hepatocyte growth factor receptor OS=Neofelis nebulosa GN=MET PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 51/151 (33.77%), Postives = 79/151 (52.32%), Query Frame = 2
Query:  185 FKEELGRGSFGIVYKGVLKSASGKAI--AVKKLDRLAQERE-REFKSEVSAIGRTHHKNLVQLLGFCDEALNR-LLVYEFMGNGTLANLIF-AIPKPDWNLRVRISLEIARGLVYLHEECNVPIIHCDIKPQNILLDNYFSAKISDFGLSK 622
            F E +GRG FG VY G L  +  K I  AVK L+R+    E  +F +E   +    H N++ LLG C  +    L+V  +M +G L N I      P     +   L++A+G+ YL  +     +H D+  +N +LD  F+ K++DFGL++
Sbjct: 1081 FNEVIGRGHFGCVYHGTLLDSDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLAR 1228          
BLAST of FC929873 vs. ExPASy Swiss-Prot
Match: MET_FELCA (Hepatocyte growth factor receptor OS=Felis catus GN=MET PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 51/151 (33.77%), Postives = 79/151 (52.32%), Query Frame = 2
Query:  185 FKEELGRGSFGIVYKGVLKSASGKAI--AVKKLDRLAQERE-REFKSEVSAIGRTHHKNLVQLLGFCDEALNR-LLVYEFMGNGTLANLIF-AIPKPDWNLRVRISLEIARGLVYLHEECNVPIIHCDIKPQNILLDNYFSAKISDFGLSK 622
            F E +GRG FG VY G L  +  K I  AVK L+R+    E  +F +E   +    H N++ LLG C  +    L+V  +M +G L N I      P     +   L++A+G+ YL  +     +H D+  +N +LD  F+ K++DFGL++
Sbjct: 1081 FNEVIGRGHFGCVYHGTLLDSDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLAR 1228          
BLAST of FC929873 vs. ExPASy Swiss-Prot
Match: MET_DASNO (Hepatocyte growth factor receptor OS=Dasypus novemcinctus GN=MET PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 51/151 (33.77%), Postives = 79/151 (52.32%), Query Frame = 2
Query:  185 FKEELGRGSFGIVYKGVLKSASGKAI--AVKKLDRLAQERE-REFKSEVSAIGRTHHKNLVQLLGFCDEALNR-LLVYEFMGNGTLANLIF-AIPKPDWNLRVRISLEIARGLVYLHEECNVPIIHCDIKPQNILLDNYFSAKISDFGLSK 622
            F E +GRG FG VY G L  +  K I  AVK L+R+    E  +F +E   +    H N++ LLG C  +    L+V  +M +G L N I      P     +   L++A+G+ YL  +     +H D+  +N +LD  F+ K++DFGL++
Sbjct: 1081 FNEVIGRGHFGCVYHGTLLDSDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLAR 1228          
The following BLAST results are available for this feature:
BLAST of FC929873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EPHB3_XENLA7.225e-1330.24Ephrin type-B receptor 3 OS=Xenopus laevis GN=ephb... [more]
EPHB2_MOUSE7.225e-1330.77Ephrin type-B receptor 2 OS=Mus musculus GN=Ephb2 ... [more]
EPHB2_HUMAN7.225e-1330.77Ephrin type-B receptor 2 OS=Homo sapiens GN=EPHB2 ... [more]
DKF2_CAEEL7.225e-1329.00Serine/threonine-protein kinase dkf-2 OS=Caenorhab... [more]
Y5168_ARATH9.436e-1326.83Probably inactive receptor-like protein kinase At5... [more]
STK6_RAT9.436e-1330.90Serine/threonine-protein kinase 6 OS=Rattus norveg... [more]
ROCO7_DICDI9.436e-1334.16Probable serine/threonine-protein kinase roco7 OS=... [more]
MET_NEONE9.436e-1333.77Hepatocyte growth factor receptor OS=Neofelis nebu... [more]
MET_FELCA9.436e-1333.77Hepatocyte growth factor receptor OS=Felis catus G... [more]
MET_DASNO9.436e-1333.77Hepatocyte growth factor receptor OS=Dasypus novem... [more]

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Properties
Property NameValue
Genbank descriptionC34001D03EF PostHarvC1 Citrus clementina cDNA clone C34001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929873 ID=FC929873; Name=FC929873; organism=Citrus clementina; type=EST; length=723bp
ATTCTTATTAGGTCCTTTCCTGCGAGGAAGTTCTATATTCTGCAATGCCT
TTCTGCTGCTAGCAATACTTATCCTTTTAAAGTGGCGCAGGAGAAAGTAT
GAAAATAATGTCCAAGATTCAAGCACTTCCGAAACAAATCTGCGATTATT
TTCCTATAACGAACTTAAAGAAGCGACAGGCGGGTTCAAAGAAGAACTGG
GCCGGGGTTCTTTTGGCATAGTTTACAAAGGAGTCCTCAAATCTGCTTCA
GGAAAGGCTATAGCTGTCAAGAAACTGGACAGGTTAGCTCAAGAAAGGGA
ACGGGAATTCAAATCTGAAGTGAGTGCAATTGGGAGAACTCATCACAAGA
ATCTAGTCCAGTTACTTGGATTCTGTGATGAAGCTCTCAACCGGCTTTTA
GTATACGAATTCATGGGCAATGGCACTTTGGCAAACTTAATATTTGCAAT
TCCAAAGCCTGACTGGAATCTCCGAGTTCGGATTTCACTGGAAATTGCAA
GAGGGCTTGTGTACTTGCATGAAGAGTGCAATGTGCCCATCATTCACTGC
GATATAAAGCCTCAAAACATACTTCTAGATAACTATTTCAGCGCAAAAAT
TTCTGACTTTGGATTATCCAAGTTGTTACTCTCTGATCAGTCTCGAACAC
ATACCATGATCAGAGGAACTCGGGGATATGTGGCTCCAGAATGGGTTCAG
ATGCACCTATCTCAGCCAAAGTG
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