FC929880

Overview
NameFC929880
Unique NameFC929880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929880_ssr40 microsatellite FC929880_ssr40:40..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3062 contig Ccv1_Contig3062:88..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.293e-30
Identity = 70/196 (35.71%), Postives = 110/196 (56.12%), Query Frame = 1
Query:  157 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGL-NRRLRL----------PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            +A  +F  F ++++K Y +++E  YR+ +F+ N+    ++   + +AV+ + +F+D+  +E   +  GL +  L L          PA  Q+         P  FDWR    +T VKDQG CG+CW F++ GALE  + +    L+ LSEQQLVDCD           D GC+GGL+++A+E I+K GGVE+E DY
Sbjct:   35 SAPLYFEKFITQYNKQYKSEDEKKYRYNIFRHNIESINQKNSRNDSAVYKINRFADMPKNEIVIRHTGLASGELGLNFCETIVVDGPAQRQR---------PVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCDF---------VDMGCDGGLIHTAYEQIMKMGGVEQEFDY 212          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 73/171 (42.69%), Postives = 99/171 (57.89%), Query Frame = 1
Query:  220 EHDYRFRVFKANLR-------RAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            EH+ RF VF  NL+       RA  R         G+ +F+DLT  EFR  FLG     R  A  ++       +LP   DWR+ GAV  VK+QG CGSCW+FSA   +E  + L TGE+++LSEQ+LV+C        +   +SGCNGGLM+ AF++I+K GG++ E DY
Sbjct:   70 EHERRFLVFWDNLKFVDAHNARADERGGFRL----GMNRFADLTNEEFRATFLGAKVAERSRAAGERYRHDGVEELPESVDWREKGAVAPVKNQGQCGSCWAFSAVSTVESINQLVTGEMITLSEQELVEC-------STNGQNSGCNGGLMDDAFDFIIKNGGIDTEDDY 229          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: LMCPB_LEIME (Cysteine proteinase B OS=Leishmania mexicana GN=LMCPB PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29
Identity = 72/174 (41.38%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  172 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLG----LNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 681
            F  FK  + + Y T  E   R   F+ NL   +  Q  +P A  G+TKF DL+ +EF  ++L          R  A   +      + +P   DWR+ GAVT VKDQGACGSCW+FSA G +EG  +L+  ELVSLSEQQLV CD           + GC+GGLM  AF+++L+
Sbjct:   38 FEEFKRTYGRAYETLAEEQQRLANFERNLELMREHQARNPHAQFGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKARADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIEGQWYLAGHELVSLSEQQLVSCD---------DMNDGCDGGLMLQAFDWLLQ 202          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CYSP6_DICDI (Cysteine proteinase 6 OS=Dictyostelium discoideum GN=cprF PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29
Identity = 73/175 (41.71%), Postives = 98/175 (56.00%), Query Frame = 1
Query:  211 TQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL-----PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTG--ELVSLSEQQLVDCDHECDPEESGSC-DSGCNGGLMNSAFEYILKAGGVEREKDY 711
            + EE + RF +FKAN+             V G+  F+D+T  E+R  +LG       P DA    + P+  +         DWR  GAVT +K+QG CG CWSFSATGA EGA +++ G  +L S+SEQQL+DC        SGS  ++GC GGLM  AFEYI+  GG++ E  Y
Sbjct:   42 SSEEFNGRFNIFKANMDYINEWNTKGSETVLGLNVFADITNEEYRATYLGT------PFDASSLEMTPSEKVFGGVQANSVDWRAKGAVTPIKNQGECGGCWSFSATGATEGAQYIANGDSDLTSVSEQQLIDC--------SGSYGNNGCEGGLMTLAFEYIINNGGIDTESSY 202          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29
Identity = 72/174 (41.38%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  172 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLG----LNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 681
            F  FK  + + Y T  E   R   F+ NL   +  Q  +P A  G+TKF DL+ +EF  ++L          R  A   +      + +P   DWR+ GAVT VKDQGACGSCW+FSA G +EG  +L+  ELVSLSEQQLV CD           + GC+GGLM  AF+++L+
Sbjct:   38 FEEFKRTYGRAYETLAEEQQRLANFERNLELMREHQARNPHAQFGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKARADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIEGQWYLAGHELVSLSEQQLVSCD---------DMNDGCDGGLMLQAFDWLLQ 202          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.375e-29
Identity = 75/175 (42.86%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  199 KTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH--GVTKFSDLTPSEFRRQFLGLNRRLRLPAD-AQKAPILPTNDLPTDFDWRDHGAVTG-VKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            K Y    E + RF++FK NL+R +     DP   +  G+ KFSDLT  EF+  +LG     +  +D A++      + LP + DWR+ GAV   VK QG CGSCW+F+ATGA+EG + ++TGELVSLSEQ+L+DCD        G+ + GC GG    AFE+I + GG+  ++ Y
Sbjct:   50 KNYNGLGEKERRFKIFKDNLKRIEEHNS-DPNRSYERGLNKFSDLTADEFQASYLGGKMEKKSLSDVAERYQYKEGDVLPDEVDWRERGAVVPRVKRQGECGSCWAFAATGAVEGINQITTGELVSLSEQELIDCDR-------GNDNFGCAGGGAVWAFEFIKENGGIVSDEVY 216          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 70/192 (36.46%), Postives = 104/192 (54.17%), Query Frame = 1
Query:  157 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPT-------NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            NA+  F+ F  K++K Y   +E + RF +FK NL     R  L+ +A+  +   +D++ +E  ++  GL   L +  + + +   PT         +P  FDWRD  +VT VK Q  CGSCW+FSA   +E  + +     + LSEQQLVDCD           ++GCNGGLM+ AFE I++AGG+  E  Y
Sbjct:   38 NAQELFNEFVVKYNKVYKDDQEKEARFEIFKQNLADINARNALEDSAMFEINSRADISSNELLQKLTGLKLSL-MRGEKKNSFCTPTVISGDSSGKVPDSFDWRDRNSVTSVKMQKECGSCWAFSAVANIESLYHIKHNVSLDLSEQQLVDCD---------KVNNGCNGGLMSWAFEGIIRAGGISYEAPY 219          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.168e-29
Identity = 75/191 (39.27%), Postives = 99/191 (51.83%), Query Frame = 1
Query:  151 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRA----KRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            L  A   +  FK+++ + Y   +E  YR RVF+ N +      K+ +  + T    + +F D+T  EF     G  +  R   + +         +  D DWR    VT VKDQ  CGSCW+FSATGALEG HFL   ELVSLSEQQLVDC  +         + GC GG M SAF+YI   GG++ E  Y
Sbjct:   13 LATASPSWDHFKTQYGRKYGDAKEELYRQRVFQQNEQLIEDFNKKFENGEVTFKVAMNQFGDMTNEEFNAVMKGYKKGSR--GEPKAVFTAEAGPMAADVDWRTKALVTPVKDQEQCGSCWAFSATGALEGQHFLKNDELVSLSEQQLVDCSTDYG-------NDGCGGGWMTSAFDYIKDNGGIDTESSY 194          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CYSEP_VIGMU (Vignain OS=Vigna mungo PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.168e-29
Identity = 73/185 (39.46%), Postives = 100/185 (54.05%), Query Frame = 1
Query:  172 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLG--LNRRLRLPADAQKAPIL---PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            +  ++S  + + +  E+H  RF VFKAN+        +D      + KF+D+T  EFR  + G  +N           +          +P   DWR  GAVT VKDQG CGSCW+FS   A+EG + + T +LVSLSEQ+LVDCD E         + GCNGGLM SAFE+I + GG+  E +Y
Sbjct:   40 YERWRSHHTVSRSLGEKHK-RFNVFKANVMHVHNTNKMDKPYKLKLNKFADMTNHEFRSTYAGSKVNHHKMFRGSQHGSGTFMYEKVGSVPASVDWRKKGAVTDVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDKE--------ENQGCNGGLMESAFEFIKQKGGITTESNY 215          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CYSEP_PHAVU (Vignain OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.168e-29
Identity = 75/185 (40.54%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  172 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLN----RRLR-LPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            +  ++S  + + +  E+H  RF VFKANL        +D      + KF+D+T  EFR  + G      R  R  P +           +P   DWR  GAVT VKDQG CGSCW+FS   A+EG + + T +LV+LSEQ+LVDCD E         + GCNGGLM SAFE+I + GG+  E +Y
Sbjct:   40 YERWRSHHTVSRSLGEKHK-RFNVFKANLMHVHNTNKMDKPYKLKLNKFADMTNHEFRSTYAGSKVNHPRMFRGTPHENGAFMYEKVVSVPPSVDWRKKGAVTDVKDQGQCGSCWAFSTVVAVEGINQIKTNKLVALSEQELVDCDKE--------ENQGCNGGLMESAFEFIKQKGGITTESNY 215          
The following BLAST results are available for this feature:
BLAST of FC929880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CATV_NPVSE8.293e-3035.71Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
ORYB_ORYSJ1.847e-2942.69Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
LMCPB_LEIME2.413e-2941.38Cysteine proteinase B OS=Leishmania mexicana GN=LM... [more]
CYSP6_DICDI2.413e-2941.71Cysteine proteinase 6 OS=Dictyostelium discoideum ... [more]
CYSP2_LEIPI2.413e-2941.38Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]
CPR2_ARATH5.375e-2942.86Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
CATV_GVXN7.020e-2936.46Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
CYSP3_HOMAM9.168e-2939.27Digestive cysteine proteinase 3 OS=Homarus america... [more]
CYSEP_VIGMU9.168e-2939.46Vignain OS=Vigna mungo PE=1 SV=1[more]
CYSEP_PHAVU9.168e-2940.54Vignain OS=Phaseolus vulgaris PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34001D10EF PostHarvC1 Citrus clementina cDNA clone C34001D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929880 ID=FC929880; Name=FC929880; organism=Citrus clementina; type=EST; length=713bp
GGAAACAAATCAAAAATGGACCGCCGTATTCTCTCCTCTCTCCTCCTCCT
CCTCCTATCTGCTGTGCTTGCGTCCGCCGTAGCTGTCAGCGGCGACGATG
CTATGATCAGACAGGTCGTGCCATCAGACGGCGAACAATCCGAAGATCAT
CTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCCAA
GACTTACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAAGG
CTAACCTCCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTGTC
CACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGTCA
GTTCCTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGCTCAAAAGG
CTCCTATCCTCCCTACCAACGATCTTCCTACTGACTTTGACTGGCGTGAT
CACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGCTG
GTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGACGG
GCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACGAG
TGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGGCT
AATGAACTCTGCCTTTGAGTACATACTCAAGGCTGGTGGGGTTGAGCGAG
AGAAGGACTACCC
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