FC929880

Overview
NameFC929880
Unique NameFC929880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 64/186 (34.41%), Postives = 108/186 (58.06%), Query Frame = 1
Query:  172 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH-GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL-----PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            F  + +++ + Y   +E   RF++FK N++  +     +  +   G+ +F+D+T SEF  Q+ G++    LP + ++ P++  +D+     P   DWRD+GAV  VK+Q  CGSCWSF+A   +EG + + TG LVSLSEQ+++DC          +   GC GG +N A+++I+   GV  E++Y
Sbjct:   37 FEEWMAEYGRVYKDDDEKMRRFQIFKNNVKHIETFNSRNENSYTLGINQFTDMTKSEFVAQYTGVS----LPLNIEREPVVSFDDVNISAVPQSIDWRDYGAVNEVKNQNPCGSCWSFAAIATVEGIYKIKTGYLVSLSEQEVLDC----------AVSYGCKGGWVNKAYDFIISNNGVTTEENY 208          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.943e-28
Identity = 74/193 (38.34%), Postives = 104/193 (53.89%), Query Frame = 1
Query:  145 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            +H L A+  ++ +K+  ++ Y   EE  +R  V++ N++  +          H  T     F D+T  EFR+   G   R        + P+    + P   DWR+ G VT VK+QG CGSCW+FSATGALEG  F  TG+LVSLSEQ LVDC            + GCNGGLM+ AF+Y+   GG++ E+ Y
Sbjct:   22 NHSLEAQ--WTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYSQGKHSFTMAMNTFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDC-------SGPQGNEGCNGGLMDYAFQYVADNGGLDSEESY 202          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 76/190 (40.00%), Postives = 102/190 (53.68%), Query Frame = 1
Query:  160 AEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVT-KFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPT---DFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKA--GGVEREKDY 711
            A  H+  FK +  K +    E  +RF  FK N++ A      +P A + V+ KF+DLTP EF + +L  +   R   +  K  +   +  P+     DWRD GAVT VK+QG CGSCW+FSA G +EG    S   LVSLSEQ LV CD         + D GCNGGLM+ A  +I+++  G V  E  Y
Sbjct:   38 ASAHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNPDYYARHLKN-HKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCD---------NIDEGCNGGLMDQAMNWIMQSHNGSVFTEASY 217          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CYSP7_DICDI (Cysteine proteinase 7 OS=Dictyostelium discoideum GN=cprG PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 71/173 (41.04%), Postives = 96/173 (55.49%), Query Frame = 1
Query:  211 TQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTN---DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGE--LVSLSEQQLVDCDHECDPEESGSC-DSGCNGGLMNSAFEYILKAGGVEREKDY 711
            + EE + R+ +FKAN+             V G+  F+D++  E+R  +LG       P DA    +  ++   D     DWR  GAVT +K+QG CG CWSFS TGA EGA +L+ G+  LVSLSEQ L+DC        SGS  ++GC GGLM  AFEYI+   G++ E  Y
Sbjct:   42 SSEEFNGRYNIFKANMDYVNEWNTKGSETVLGLNVFADISNEEYRATYLGT------PFDASSLEMTESDKIFDASAQVDWRTQGAVTPIKNQGQCGGCWSFSTTGATEGAQYLANGKKNLVSLSEQNLIDC--------SGSYGNNGCEGGLMTLAFEYIINNKGIDTESSY 200          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CYSP4_DICDI (Cysteine proteinase 4 OS=Dictyostelium discoideum GN=cprD PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 72/189 (38.10%), Postives = 105/189 (55.56%), Query Frame = 1
Query:  154 LNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTG---ELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            L   + F+ +     +TY++ EE + R+++FK+N+    +        V G+  F+D+T  E+R  +LG           ++  I  T   PT  DWR  GAVT +K+QG CG CWSFS TG+ EGAHF+++G   +LVSLSEQ L+DC            ++GC GGLM  AFEYI+   G++ E  Y
Sbjct:   24 LQYRNAFTNWMQAHQRTYSS-EEFNARYQIFKSNMDYVHQWNSKGGETVLGLNVFADITNQEYRTTYLGTPFDGSALIGTEEEKIFST-PAPT-VDWRAQGAVTPIKNQGQCGGCWSFSTTGSTEGAHFIASGTKKDLVSLSEQNLIDCSKSYG-------NNGCEGGLMTLAFEYIINNKGIDTESSY 202          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 73/171 (42.69%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  220 EHDYRFRVFKANLR--RAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAP-----ILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            E   RF  FK+N     +  ++   P  +H + +F D+  +EFR  F+G  RR   P+     P      L  +DLP   DWR  GAVTGVKDQG CGSCW+FS   ++EG + + TG LVSLSEQ+L+DCD         + + GC GGLM++AFEYI   GG+  E  Y
Sbjct:   61 EKHRRFGTFKSNAHFIHSHNKRGDHPYRLH-LNRFGDMDQAEFRATFVGDLRR-DTPSKPPSVPGFMYAALNVSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD--------TADNDGCQGGLMDNAFEYIKNNGGLITEAAY 221          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 72/190 (37.89%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  163 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPIL---PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            +HH+ L+K  + K Y  + E   R  +++ NL+      L     +H    G+    D+T  E     + L   LR+P+   +       P   LP   DWR+ G VT VK QGACGSCW+FSA GALE    L TG+LVSLS Q LVDC        +   + GCNGG M  AF+YI+   G++ E  Y
Sbjct:   25 DHHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVTLHNLEHSMGMHSYELGMNHLGDMTSEEV----ISLMSSLRVPSQWPRNVTYKSDPNQKLPDSMDWREKGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDC------STAKYGNKGCNGGFMTEAFQYIIDNNGIDSEASY 204          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.014e-27
Identity = 61/188 (32.45%), Postives = 105/188 (55.85%), Query Frame = 1
Query:  151 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPI-LPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            LL A  +F  F + ++K Y    E + RF +F+  L     +  L+ +AV+ + KF+DL+ +E   ++ GLN  ++     +   I  P    P +FDWR    VT +K+Q ACG+CW+F+   ++E  + +     + LSEQQ++DCD+          D GC+GGL+++AFE +++ G + +E +Y
Sbjct:   24 LLKAGDYFETFLANYNKMYNDTSEKERRFSIFQQTLEEINYKNRLNDSAVYQINKFADLSKNEIISKYTGLNMPVQTTNFCKTIVIDQPPGKGPLNFDWRQQNKVTSIKNQKACGACWAFATLASIESQYAIKNNVHIDLSEQQMIDCDY---------VDMGCDGGLLHTAFEQMIQMGELVQEHEY 202          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 73/190 (38.42%), Postives = 101/190 (53.16%), Query Frame = 1
Query:  163 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND---LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            +HH++L+K  + K Y  + E   R  +++ NL+      L     +H    G+    D+T  E     + L   LR+P   Q+     +N    LP   DWR+ G VT VK QG+CG+CW+FSA GALE    L TG+LVSLS Q LVDC      E+ G  + GCNGG M  AF+YI+   G++ E  Y
Sbjct:   25 DHHWNLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEV----MSLMSSLRVPNQWQRNITYKSNPNQMLPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCS-----EKYG--NKGCNGGFMTEAFQYIIDNKGIDSEASY 203          
BLAST of FC929880 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.729e-27
Identity = 75/172 (43.60%), Postives = 97/172 (56.40%), Query Frame = 1
Query:  220 EHDYRFRVFKANLR-------RAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTG-VKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDY 711
            EH+ RFRVF  NL+       RA  R         G+ +F+DLT  EFR  +LG     R     +         LP   DWRD GAV   VK+QG CGSCW+FSA  A+EG + + TGELVSLSEQ+LV+C            +SGCNGG+M+ AF +I + GG++ E+DY
Sbjct:   84 EHERRFRVFWDNLKFVDAHNARADERGGFRL----GMNRFADLTNGEFRATYLGTTPAGRGRRVGEAYRHDGVEALPDSVDWRDKGAVVAPVKNQGQCGSCWAFSAVAAVEGINKIVTGELVSLSEQELVEC-------ARNGQNSGCNGGIMDDAFAFIARNGGLDTEEDY 244          
The following BLAST results are available for this feature:
BLAST of FC929880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
BROM1_ANACO4.550e-2834.41Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
CATL1_CERAE5.943e-2838.34Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
LMCPA_LEIME7.762e-2840.00Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
CYSP7_DICDI7.762e-2841.04Cysteine proteinase 7 OS=Dictyostelium discoideum ... [more]
CYSP4_DICDI7.762e-2838.10Cysteine proteinase 4 OS=Dictyostelium discoideum ... [more]
CYSP2_HORVU7.762e-2842.69Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
CATS_BOVIN7.762e-2837.89Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATV_NPVBS1.014e-2732.45Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CATS_SAIBB1.324e-2738.42Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CYSP1_ORYSJ1.729e-2743.60Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001D10EF PostHarvC1 Citrus clementina cDNA clone C34001D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929880 ID=FC929880; Name=FC929880; organism=Citrus clementina; type=EST; length=713bp
GGAAACAAATCAAAAATGGACCGCCGTATTCTCTCCTCTCTCCTCCTCCT
CCTCCTATCTGCTGTGCTTGCGTCCGCCGTAGCTGTCAGCGGCGACGATG
CTATGATCAGACAGGTCGTGCCATCAGACGGCGAACAATCCGAAGATCAT
CTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCCAA
GACTTACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAAGG
CTAACCTCCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTGTC
CACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGTCA
GTTCCTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGCTCAAAAGG
CTCCTATCCTCCCTACCAACGATCTTCCTACTGACTTTGACTGGCGTGAT
CACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGCTG
GTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGACGG
GCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACGAG
TGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGGCT
AATGAACTCTGCCTTTGAGTACATACTCAAGGCTGGTGGGGTTGAGCGAG
AGAAGGACTACCC
back to top