FC929881

Overview
NameFC929881
Unique NameFC929881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929881 vs. ExPASy Swiss-Prot
Match: ALLB_ECOLC (Allantoinase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=allB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  265 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 609
            +V+D    V+ PG++D H H+ +PGR+ WEG+ +            +I+MPLN  P+T+   +++LK DAA+ ++ +D    GGLV   +YN   L  L   GV+G K F+   G
Sbjct:   42 EVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFKCFVATCG 153          
BLAST of FC929881 vs. ExPASy Swiss-Prot
Match: ALLB_ECOHS (Allantoinase OS=Escherichia coli O9:H4 (strain HS) GN=allB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  265 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 609
            +V+D    V+ PG++D H H+ +PGR+ WEG+ +            +I+MPLN  P+T+   +++LK DAA+ ++ +D    GGLV   +YN   L  L   GV+G K F+   G
Sbjct:   42 EVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFKCFVATCG 153          
BLAST of FC929881 vs. ExPASy Swiss-Prot
Match: ALLB_ECODH (Allantoinase OS=Escherichia coli (strain K12 / DH10B) GN=allB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  265 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 609
            +V+D    V+ PG++D H H+ +PGR+ WEG+ +            +I+MPLN  P+T+   +++LK DAA+ ++ +D    GGLV   +YN   L  L   GV+G K F+   G
Sbjct:   42 EVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFKCFVATCG 153          
BLAST of FC929881 vs. ExPASy Swiss-Prot
Match: ALLB_ECOBW (Allantoinase OS=Escherichia coli (strain K12 / BW2952) GN=allB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  265 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 609
            +V+D    V+ PG++D H H+ +PGR+ WEG+ +            +I+MPLN  P+T+   +++LK DAA+ ++ +D    GGLV   +YN   L  L   GV+G K F+   G
Sbjct:   42 EVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFKCFVATCG 153          
BLAST of FC929881 vs. ExPASy Swiss-Prot
Match: ALLB_ECO8A (Allantoinase OS=Escherichia coli O8 (strain IAI1) GN=allB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  265 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 609
            +V+D    V+ PG++D H H+ +PGR+ WEG+ +            +I+MPLN  P+T+   +++LK DAA+ ++ +D    GGLV   +YN   L  L   GV+G K F+   G
Sbjct:   42 EVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFKCFVATCG 153          
BLAST of FC929881 vs. ExPASy Swiss-Prot
Match: ALLB_ECO55 (Allantoinase OS=Escherichia coli (strain 55989 / EAEC) GN=allB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  265 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 609
            +V+D    V+ PG++D H H+ +PGR+ WEG+ +            +I+MPLN  P+T+   +++LK DAA+ ++ +D    GGLV   +YN   L  L   GV+G K F+   G
Sbjct:   42 EVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFKCFVATCG 153          
BLAST of FC929881 vs. ExPASy Swiss-Prot
Match: ALLB_ECO24 (Allantoinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=allB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  265 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 609
            +V+D    V+ PG++D H H+ +PGR+ WEG+ +            +I+MPLN  P+T+   +++LK DAA+ ++ +D    GGLV   +YN   L  L   GV+G K F+   G
Sbjct:   42 EVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFKCFVATCG 153          
BLAST of FC929881 vs. ExPASy Swiss-Prot
Match: ALLB_BACLD (Allantoinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=allB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 50/178 (28.09%), Postives = 88/178 (49.44%), Query Frame = 1
Query:  160 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG---RTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG----INDFPXDNASHIKEGLSVLAR 672
            ++   G     V IK+G I +I  +        + +++D   +++ PG+ID H H+ +PG   R EWEG+ +             I+MPLN  P+T+  E+++ K  A + ++ VDV  +GGLVP +      ++ L + GV+  K F+   G      DF   +   + EG+  +A+
Sbjct:   12 VILENGEQEVEVGIKDGKIAAIGQDL-----GTSAKIIDAKGSIVSPGMIDAHVHITEPGGGYRDEWEGYDTGTRAAAKGGVTTFIEMPLNQVPATVDEESIQEKFKAGKGKLSVDVASYGGLVPFDL--DGGIQELDSNGVVAYKCFLATCGDRSIEGDFMNVDDYSLYEGMKQIAK 182          
The following BLAST results are available for this feature:
BLAST of FC929881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ALLB_ECOLC1.022e-1635.65Allantoinase OS=Escherichia coli (strain ATCC 8739... [more]
ALLB_ECOHS1.022e-1635.65Allantoinase OS=Escherichia coli O9:H4 (strain HS)... [more]
ALLB_ECODH1.022e-1635.65Allantoinase OS=Escherichia coli (strain K12 / DH1... [more]
ALLB_ECOBW1.022e-1635.65Allantoinase OS=Escherichia coli (strain K12 / BW2... [more]
ALLB_ECO8A1.022e-1635.65Allantoinase OS=Escherichia coli O8 (strain IAI1) ... [more]
ALLB_ECO551.022e-1635.65Allantoinase OS=Escherichia coli (strain 55989 / E... [more]
ALLB_ECO241.022e-1635.65Allantoinase OS=Escherichia coli O139:H28 (strain ... [more]
ALLB_BACLD2.130e-1428.09Allantoinase OS=Bacillus licheniformis (strain DSM... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001D12EF PostHarvC1 Citrus clementina cDNA clone C34001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929881 ID=FC929881; Name=FC929881; organism=Citrus clementina; type=EST; length=698bp
AGAGGAATGGAGAATCTCAATCTGCAGTGGAGGCTGTTGCCTACGCTAAC
ACTGCTAGCTGCTTCTCTGTTCTTGCTTGTTTTTAAGGATTCTGCCAAGT
TATCTCACAGTGAGTGCAGTCTCCTTCCTTACAACCAGTACTGGTTAACC
AGCAAGCGGATTGTGACACCAAAAGGAGTTATTTCTGGTGCAGTTGAGAT
CAAGGAAGGGAATATCATATCCATTGTTTCAGAAGAAGATTGGCCTCGGA
ACTCCAAGACAGGACAAGTAGTTGATTATGGAGAGGCTGTTATCATGCCT
GGTTTGATTGATGTGCATGCACATCTCGATGATCCAGGAAGAACTGAGTG
GGAAGGATTTCCTTCGGGGACCAAAGCAGCTGCTGCAGGTGGTATAACAA
CATTAATTGACATGCCCCTCAATAGCGATCCCTCAACTATCTCAACGGAA
ACTCTGAAATTAAAGGTTGATGCAGCAGAGAAGAGAATCTATGTTGATGT
TGGTTTTTGGGGAGGTCTAGTTCCTGAAAATGCATATAATGCAAGTGCTC
TAGAAGCTCTTTTGAATGCTGGTGTTCTTGGATTAAAGTCTTTTATGTGT
CCTTCAGGGATCAACGACTTTCCTATNGACAATGCCAGCCATATTAAGGA
AGGACTATCTGTATTGGCAAGATACAAAGAACTTTACTTGTACATGCT
back to top