FC929882

Overview
NameFC929882
Unique NameFC929882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HINT1_PONAB (Histidine triad nucleotide-binding protein 1 OS=Pongo abelii GN=HINT1 PE=2 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 2.991e-30
Identity = 61/112 (54.46%), Postives = 84/112 (75.00%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK    ++ +S AE+ +  +LG L+   K  A   GL  G+R+V+N+G +GGQSV+H+H+H+LGGRQM+ PPG
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVAEDDNESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HINT1_HUMAN (Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.101e-30
Identity = 61/112 (54.46%), Postives = 83/112 (74.11%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK    ++ +S AE+    +LG L+   K  A   GL  G+R+V+N+G +GGQSV+H+H+H+LGGRQM+ PPG
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HINT_CAEEL (Histidine triad nucleotide-binding protein 1 OS=Caenorhabditis elegans GN=hint-1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.663e-30
Identity = 58/112 (51.79%), Postives = 84/112 (75.00%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            T+F KII KEIP+K+++EDD+ LAF D+ PQAP H L+IPK +  +  L  A +    ++G+L+ TA  VAKQ G+ +G+R+V+N+G +G QSVFH+H+H+LGGRQ+  PPG
Sbjct:   21 TLFGKIIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLVIPKRRIDM--LENAVDSDAALIGKLMVTASKVAKQLGMANGYRVVVNNGKDGAQSVFHLHLHVLGGRQLQWPPG 130          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: YHIT_SYNY3 (Uncharacterized HIT-like protein slr1234 OS=Synechocystis sp. (strain PCC 6803) GN=slr1234 PE=4 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.279e-27
Identity = 61/112 (54.46%), Postives = 77/112 (68.75%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            TIF KII +EIP+ +VYEDD  LAF+D+ PQAP H+L+IPK    L  LS A      +LG LL  AK VA   G+ D FR+VIN+G   GQ+VFH+H+H+LGGR  + PPG
Sbjct:    5 TIFSKIIRREIPAAIVYEDDLCLAFKDVNPQAPVHVLLIPKKP--LPQLSAATPEDHALLGHLLLKAKEVAADLGIGDQFRLVINNGAEVGQTVFHLHLHILGGRPFSWPPG 114          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HINT_SHIFL (HIT-like protein hinT OS=Shigella flexneri GN=hinT PE=4 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.895e-27
Identity = 60/111 (54.05%), Postives = 81/111 (72.97%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGP 406
            TIF KII +EIPS +VY+DD V AFRDI PQAPTHILIIP +   +  ++     H + LGR++  A  +A+QEG+ EDG+R+++N   +GGQ V+HIH+HLLGGR + GP
Sbjct:    5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL-GP 112          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HINT_ECOLI (HIT-like protein hinT OS=Escherichia coli (strain K12) GN=hinT PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.895e-27
Identity = 60/111 (54.05%), Postives = 81/111 (72.97%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGP 406
            TIF KII +EIPS +VY+DD V AFRDI PQAPTHILIIP +   +  ++     H + LGR++  A  +A+QEG+ EDG+R+++N   +GGQ V+HIH+HLLGGR + GP
Sbjct:    5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL-GP 112          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HINT_ECO57 (HIT-like protein hinT OS=Escherichia coli O157:H7 GN=hinT PE=4 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.895e-27
Identity = 60/111 (54.05%), Postives = 81/111 (72.97%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGP 406
            TIF KII +EIPS +VY+DD V AFRDI PQAPTHILIIP +   +  ++     H + LGR++  A  +A+QEG+ EDG+R+++N   +GGQ V+HIH+HLLGGR + GP
Sbjct:    5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL-GP 112          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: YHIT_AQUAE (Uncharacterized HIT-like protein aq_141 OS=Aquifex aeolicus GN=aq_141 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.783e-25
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 2
Query:   80 IFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAK------QEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            IF KI+  E+P+K VYEDDKVLAF DI P AP HILIIP  K  + G+   E     ++G + Y A+ +A+       E L  G+R+V N G + GQSVFH+H+HL+GGR+M+ PPG
Sbjct:    7 IFCKIVRGEVPAKKVYEDDKVLAFHDINPVAPVHILIIP--KKHIMGIQTLEPEDECLVGHMFYVARKIAEDLGIAPDENLNKGYRLVFNVGKDAGQSVFHLHLHLIGGREMSWPPG 121          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: Y961_HAEIN (HIT-like protein HI0961 OS=Haemophilus influenzae GN=HI0961 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.589e-23
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIP-KVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLGGRQM 397
            TIF KII KEIP+ +VY+D+ V AFRDI PQA THILIIP KV   +  +++ +E     LGRL   A  +AK+EG+ EDG+R+++N   +GGQ VFH+H+HL+GG  +
Sbjct:    5 TIFSKIIRKEIPANIVYQDELVTAFRDISPQAKTHILIIPNKVIPTVNDVTEQDE---VALGRLFSVAAKLAKEEGVAEDGYRLIVNCNKHGGQEVFHLHMHLVGGEPL 110          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HITA_NEIGO (Protein hitA OS=Neisseria gonorrhoeae GN=hitA PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.722e-22
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 2
Query:   80 IFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLG 385
            IF KI  KEIP++ VYED +++ F+DI P AP H+L+IPKV      L+ A   H  +LG+++     +AK  GL DGF+ +IN G  GGQ VFH+H+H++G
Sbjct:    5 IFCKIAAKEIPAQTVYEDGEMVCFKDINPAAPLHLLLIPKVH--FDSLAHAAPEHQPLLGKMMLKVPEIAKASGLTDGFKTLINTGKGGGQEVFHLHIHIMG 104          
The following BLAST results are available for this feature:
BLAST of FC929882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
HINT1_PONAB2.991e-3054.46Histidine triad nucleotide-binding protein 1 OS=Po... [more]
HINT1_HUMAN5.101e-3054.46Histidine triad nucleotide-binding protein 1 OS=Ho... [more]
HINT_CAEEL6.663e-3051.79Histidine triad nucleotide-binding protein 1 OS=Ca... [more]
YHIT_SYNY35.279e-2754.46Uncharacterized HIT-like protein slr1234 OS=Synech... [more]
HINT_SHIFL6.895e-2754.05HIT-like protein hinT OS=Shigella flexneri GN=hinT... [more]
HINT_ECOLI6.895e-2754.05HIT-like protein hinT OS=Escherichia coli (strain ... [more]
HINT_ECO576.895e-2754.05HIT-like protein hinT OS=Escherichia coli O157:H7 ... [more]
YHIT_AQUAE3.783e-2549.57Uncharacterized HIT-like protein aq_141 OS=Aquifex... [more]
Y961_HAEIN1.589e-2352.29HIT-like protein HI0961 OS=Haemophilus influenzae ... [more]
HITA_NEIGO8.722e-2247.06Protein hitA OS=Neisseria gonorrhoeae GN=hitA PE=4... [more]

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Properties
Property NameValue
Genbank descriptionC34001E01EF PostHarvC1 Citrus clementina cDNA clone C34001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929882 ID=FC929882; Name=FC929882; organism=Citrus clementina; type=EST; length=631bp
GACGTATCATTTGTCTGCCGTCCTCATGGCTTCAGAGAAAGAGGCTGCTG
CTGCAGCCGTTCCTTCTGATTCGCCCACCATATTTGACAAAATAATTAAC
AAAGAAATCCCATCTAAAGTTGTTTATGAGGATGATAAGGTCTTAGCCTT
TAGGGACATAGAGCCCCAAGCTCCTACACACATTCTAATTATTCCCAAAG
TGAAGGATGGCTTGACTGGACTTTCAAAGGCTGAGGAAAGGCATTGCGAA
ATTCTTGGCCGCCTTCTTTACACTGCTAAGCTTGTTGCTAAACAGGAAGG
ACTAGAAGACGGCTTTAGGATTGTGATTAATGATGGGCCAAATGGAGGTC
AATCAGTTTTTCACATCCACGTCCACCTCCTAGGAGGACGACAAATGAAC
GGGCCCCCGGGCTAAGATGAAGTATTTTGGGTGCCAGATTCTCTTATGAA
AAAATGATTACGCCCTTTGTACTTTAATATGCATCAAGCTTCAAATAACA
AATTACTTGGTGGTTGCTCTGAACCACATTATTTGATATGATGTGAAATG
ACATTGTGCTGGAAGGAGAAAAAGACCTTCAATAATAAGGGTGTGGTTTG
TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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