FC929882

Overview
NameFC929882
Unique NameFC929882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: PKIA_DICDI (Protein pkiA OS=Dictyostelium discoideum GN=pkiA PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.329e-21
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVK-DGLTGLSKAE-ERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            TIF KII+  IPSK  Y+D+  +A  DI PQAP H+L+IPK+   GL+ ++  + E++ E +G ++     +A  +G  D +R+VIN+G  G QSV  +H+H+LGGRQMN PPG
Sbjct:   15 TIFAKIISGAIPSKKFYDDEYCIAIEDINPQAPVHLLVIPKLAVGGLSDVANVDLEKYKESMGHIMSKIHHIASLKG-ADSYRLVINEGVLGQQSVRWLHIHILGGRQMNWPPG 127          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: YHIT_BUCBP (Uncharacterized HIT-like protein bbp_327 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_327 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.102e-19
Identity = 45/108 (41.67%), Postives = 74/108 (68.52%), Query Frame = 2
Query:   80 IFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLE-DGFRIVINDGPNGGQSVFHIHVHLLGGRQMN 400
            IF KII   IPSK++Y+D ++ AF DI P AP HIL++P +   +  L++  E +  ILG +LY +  +AK+  ++ +G+R++IN   +G Q + H+H+HLLGG+++N
Sbjct:    5 IFQKIIKGIIPSKIIYQDKEITAFHDINPIAPIHILVVPNLL--IKSLNEINENNKHILGNMLYISIKIAKKFKIDKNGYRLIINCNQHGRQEIQHLHLHLLGGKKLN 110          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: YHIT_BUCAI (Uncharacterized HIT-like protein BU357 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU357 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.479e-18
Identity = 43/108 (39.81%), Postives = 74/108 (68.52%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLGGRQM 397
            +IF  II ++IP+ +VY+D K+ AF DI+P+AP HILIIP     ++  +   +++  I+  + Y A  +AKQ+ + ++G+RI+IN    GGQ + ++H+HLLGG+++
Sbjct:    5 SIFKNIIQRKIPANIVYQDKKITAFEDIKPKAPVHILIIPNF--FISSSNDINKKNKWIMSHMFYIAVKIAKQKKINQEGYRIIINCNEYGGQEINYLHMHLLGGKKL 110          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: YHIT_BUCAP (Uncharacterized HIT-like protein BUsg_345 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_345 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.303e-17
Identity = 43/107 (40.19%), Postives = 70/107 (65.42%), Query Frame = 2
Query:   80 IFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLGGRQM 397
            IF KII +E  + ++Y+D  V AF DI P+AP HI++IP +   +  L+   +++  I   +LY A  +AK + + EDG++IV+N   NGGQ + ++H+HLLGG ++
Sbjct:    7 IFQKIIKRETSTHIIYQDKIVTAFEDIAPKAPIHIIVIPNI--FIKTLNDINQKNKNIFAHMLYIAVKIAKNKKISEDGYKIVMNCNKNGGQEINYLHMHLLGGEKL 111          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: Y664_CHLMU (Uncharacterized HIT-like protein TC_0664 OS=Chlamydia muridarum GN=TC_0664 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.223e-17
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGG 388
            TIF++II   +    V+ED+  +  +D  PQAP H+LIIPK    +  L   +     +L       +L+A+  G+E+G+R+VIN+G  GGQSVFH+H+HLLGG
Sbjct:   18 TIFERIIEGAVECDKVFEDENFIVIKDKFPQAPVHLLIIPKKH--IEKLQDMQSDDFSLLSEAGKIIQLMARDFGIENGYRVVINNGLEGGQSVFHLHIHLLGG 119          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: YHIT_CHLTR (Uncharacterized HIT-like protein CT_385 OS=Chlamydia trachomatis GN=CT_385 PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.103e-16
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGG 388
            TIF++II   +    V+ED+  +  +D  PQAP H+LIIPK    +  L   +     +L       +L+A+  G+E+G+R+V+N+G  GGQSVFH+H+HLLGG
Sbjct:    3 TIFERIIEGAVECDKVFEDENFIVIKDKFPQAPVHLLIIPKKH--IEKLQDIQGDDFLLLAEAGKIIQLMARNFGIENGYRVVVNNGLEGGQSVFHLHIHLLGG 104          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: YHIT_RICPR (Uncharacterized HIT-like protein RP317 OS=Rickettsia prowazekii GN=RP317 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.441e-16
Identity = 42/111 (37.84%), Postives = 70/111 (63.06%), Query Frame = 2
Query:   80 IFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVK--DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLED-GFRIVINDGPNGGQSVFHIHVHLLGGRQMNG 403
            +F KII K +P++++YED ++LAF+DI P AP HI++IPK +  D    +SKA     + +         +A + GL+  G+R++ N G   GQ++FH H H++GG+++ G
Sbjct:    7 VFAKIITKNLPAEIIYEDKQILAFKDIAPIAPVHIIVIPKNEYIDYTDFISKAS---IDEIKHFFSKIADIANEAGLDKVGYRLITNKGEKSGQTIFHFHFHIIGGKKLIG 114          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: YHIT_CHLPN (HIT-like protein CPn_0488/CP_0266/CPj0488/CpB0508 OS=Chlamydia pneumoniae GN=CPn_0488 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.081e-15
Identity = 43/110 (39.09%), Postives = 70/110 (63.64%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLV---AKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQM 397
            T+F +II+  I  + V+E++  +A +D  PQAP H+LIIPK       + + ++   + +  +    K+V   A + G+ DG+R+VIN+G  GGQ+VFH+H+HLLGGR +
Sbjct:    2 TVFKQIIDGLIDCEKVFENENFIAIKDRFPQAPVHLLIIPKKP-----IPRFQDIPGDEMILMAEAGKIVQELAAEFGIADGYRVVINNGAEGGQAVFHLHIHLLGGRPL 106          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: YHIT_AZOBR (Uncharacterized 13.2 kDa HIT-like protein in hisE 3'region OS=Azospirillum brasilense PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.005e-14
Identity = 44/113 (38.94%), Postives = 59/113 (52.21%), Query Frame = 2
Query:   68 DSPTIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGP 406
            D   +F +I+  EIP K V E +  LAF DI PQAPTHIL+IPK          A     EI G      ++       E G+RI+ N G +  Q V H+H+H+  GR++ GP
Sbjct:    6 DPNNVFARILRGEIPCKKVLETEHALAFHDINPQAPTHILVIPKGAYVDMDDFSARATEAEIAGLFRAVGEVARGAGAAEPGYRILSNCGEDANQEVPHLHIHVFAGRRL-GP 117          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: Y866_METJA (Uncharacterized HIT-like protein MJ0866 OS=Methanocaldococcus jannaschii GN=MJ0866 PE=4 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 2
Query:   80 IFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPK---------VKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 382
            IF KIIN EIP+KVVYED+ VLAF DI P+   H L++PK           D L    K  ++  E+L +L +            DG+ IV N+G   GQ V H+H H++
Sbjct:    3 IFCKIINGEIPAKVVYEDEHVLAFLDINPRNKGHTLVVPKKHYERFDEMPDDELCNFIKGVKKTVEVLKKLGF------------DGYNIVNNNGRVAGQEVNHVHFHII 100          
The following BLAST results are available for this feature:
BLAST of FC929882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
PKIA_DICDI4.329e-2146.49Protein pkiA OS=Dictyostelium discoideum GN=pkiA P... [more]
YHIT_BUCBP3.102e-1941.67Uncharacterized HIT-like protein bbp_327 OS=Buchne... [more]
YHIT_BUCAI4.479e-1839.81Uncharacterized HIT-like protein BU357 OS=Buchnera... [more]
YHIT_BUCAP1.303e-1740.19Uncharacterized HIT-like protein BUsg_345 OS=Buchn... [more]
Y664_CHLMU2.223e-1742.31Uncharacterized HIT-like protein TC_0664 OS=Chlamy... [more]
YHIT_CHLTR1.103e-1641.35Uncharacterized HIT-like protein CT_385 OS=Chlamyd... [more]
YHIT_RICPR1.441e-1637.84Uncharacterized HIT-like protein RP317 OS=Ricketts... [more]
YHIT_CHLPN2.081e-1539.09HIT-like protein CPn_0488/CP_0266/CPj0488/CpB0508 ... [more]
YHIT_AZOBR3.005e-1438.94Uncharacterized 13.2 kDa HIT-like protein in hisE ... [more]
Y866_METJA1.262e-1240.00Uncharacterized HIT-like protein MJ0866 OS=Methano... [more]

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Properties
Property NameValue
Genbank descriptionC34001E01EF PostHarvC1 Citrus clementina cDNA clone C34001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929882 ID=FC929882; Name=FC929882; organism=Citrus clementina; type=EST; length=631bp
GACGTATCATTTGTCTGCCGTCCTCATGGCTTCAGAGAAAGAGGCTGCTG
CTGCAGCCGTTCCTTCTGATTCGCCCACCATATTTGACAAAATAATTAAC
AAAGAAATCCCATCTAAAGTTGTTTATGAGGATGATAAGGTCTTAGCCTT
TAGGGACATAGAGCCCCAAGCTCCTACACACATTCTAATTATTCCCAAAG
TGAAGGATGGCTTGACTGGACTTTCAAAGGCTGAGGAAAGGCATTGCGAA
ATTCTTGGCCGCCTTCTTTACACTGCTAAGCTTGTTGCTAAACAGGAAGG
ACTAGAAGACGGCTTTAGGATTGTGATTAATGATGGGCCAAATGGAGGTC
AATCAGTTTTTCACATCCACGTCCACCTCCTAGGAGGACGACAAATGAAC
GGGCCCCCGGGCTAAGATGAAGTATTTTGGGTGCCAGATTCTCTTATGAA
AAAATGATTACGCCCTTTGTACTTTAATATGCATCAAGCTTCAAATAACA
AATTACTTGGTGGTTGCTCTGAACCACATTATTTGATATGATGTGAAATG
ACATTGTGCTGGAAGGAGAAAAAGACCTTCAATAATAAGGGTGTGGTTTG
TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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