FC929882

Overview
NameFC929882
Unique NameFC929882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: YHIT_HELPY (Uncharacterized HIT-like protein HP_0404 OS=Helicobacter pylori GN=HP_0404 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = 2
Query:   80 IFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVK-DGLTGLSKAEERHCEILGRLL-YTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGG 388
            +F+KII  EIP   + E+++ L+F DI P+A  H L+IPK       G++       E++ ++  +  ++V K    E G++++ N G N GQ V H+H H+L G
Sbjct:    3 VFEKIIQGEIPCSKILENERFLSFYDINPKAKVHALVIPKQSIQDFNGITP------ELMAQMTSFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSG 101          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: YHIT_HELPJ (Uncharacterized HIT-like protein jhp_0977 OS=Helicobacter pylori J99 GN=jhp_0977 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = 2
Query:   80 IFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVK-DGLTGLSKAEERHCEILGRLL-YTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGG 388
            +F+KII  EIP   + E+++ L+F DI P+A  H L+IPK       G++       E++ ++  +  ++V K    E G++++ N G N GQ V H+H H+L G
Sbjct:    3 VFEKIIQGEIPCSKILENERFLSFYDINPKAKVHALVIPKQSIQDFNGITP------ELMAQMTSFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSG 101          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: YHIT_BORBU (Uncharacterized HIT-like protein BB_0379 OS=Borrelia burgdorferi GN=BB_0379 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 42/103 (40.78%), Postives = 54/103 (52.43%), Query Frame = 2
Query:   80 IFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKV-KDGLTGL-SKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 382
            IF KIINKE+PS  VYEDD VLAF DI P    H L+IPK   + L  +  K  ER  ++  ++    K +     +  G  I    G   GQ VFH H H++
Sbjct:    5 IFCKIINKELPSYKVYEDDLVLAFLDINPLTVGHTLVIPKEHSESLLNMDDKFNERVLKVCKKISNALKRI--NSSIYGGINIYSALGAGAGQEVFHTHFHVI 105          
The following BLAST results are available for this feature:
BLAST of FC929882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
YHIT_HELPY5.304e-1134.29Uncharacterized HIT-like protein HP_0404 OS=Helico... [more]
YHIT_HELPJ5.304e-1134.29Uncharacterized HIT-like protein jhp_0977 OS=Helic... [more]
YHIT_BORBU9.047e-1140.78Uncharacterized HIT-like protein BB_0379 OS=Borrel... [more]

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Properties
Property NameValue
Genbank descriptionC34001E01EF PostHarvC1 Citrus clementina cDNA clone C34001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929882 ID=FC929882; Name=FC929882; organism=Citrus clementina; type=EST; length=631bp
GACGTATCATTTGTCTGCCGTCCTCATGGCTTCAGAGAAAGAGGCTGCTG
CTGCAGCCGTTCCTTCTGATTCGCCCACCATATTTGACAAAATAATTAAC
AAAGAAATCCCATCTAAAGTTGTTTATGAGGATGATAAGGTCTTAGCCTT
TAGGGACATAGAGCCCCAAGCTCCTACACACATTCTAATTATTCCCAAAG
TGAAGGATGGCTTGACTGGACTTTCAAAGGCTGAGGAAAGGCATTGCGAA
ATTCTTGGCCGCCTTCTTTACACTGCTAAGCTTGTTGCTAAACAGGAAGG
ACTAGAAGACGGCTTTAGGATTGTGATTAATGATGGGCCAAATGGAGGTC
AATCAGTTTTTCACATCCACGTCCACCTCCTAGGAGGACGACAAATGAAC
GGGCCCCCGGGCTAAGATGAAGTATTTTGGGTGCCAGATTCTCTTATGAA
AAAATGATTACGCCCTTTGTACTTTAATATGCATCAAGCTTCAAATAACA
AATTACTTGGTGGTTGCTCTGAACCACATTATTTGATATGATGTGAAATG
ACATTGTGCTGGAAGGAGAAAAAGACCTTCAATAATAAGGGTGTGGTTTG
TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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