FC929888

Overview
NameFC929888
Unique NameFC929888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: STXB1_RAT (Syntaxin-binding protein 1 OS=Rattus norvegicus GN=Stxbp1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 55/176 (31.25%), Postives = 103/176 (58.52%), Query Frame = 1
Query:  166 KQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIA 690
            K +  E++++++++  K    K  WKVL++D+L+++++S  CKM DI  EG+++VEDI++RR+PLPS+EA+Y I P++++V   +SD     +  Y+ A VFF+      L   + K S     I  L E+N+ +   +SQ +  D   + +  +   + ++  +  L  +A +IA
Sbjct:    7 KAVVGEKIMHDVIKKVK---KKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIA 177          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: STXB1_PONAB (Syntaxin-binding protein 1 OS=Pongo abelii GN=STXBP1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 55/176 (31.25%), Postives = 103/176 (58.52%), Query Frame = 1
Query:  166 KQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIA 690
            K +  E++++++++  K    K  WKVL++D+L+++++S  CKM DI  EG+++VEDI++RR+PLPS+EA+Y I P++++V   +SD     +  Y+ A VFF+      L   + K S     I  L E+N+ +   +SQ +  D   + +  +   + ++  +  L  +A +IA
Sbjct:    7 KAVVGEKIMHDVIKKVK---KKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIA 177          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: STXB1_MOUSE (Syntaxin-binding protein 1 OS=Mus musculus GN=Stxbp1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 55/176 (31.25%), Postives = 103/176 (58.52%), Query Frame = 1
Query:  166 KQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIA 690
            K +  E++++++++  K    K  WKVL++D+L+++++S  CKM DI  EG+++VEDI++RR+PLPS+EA+Y I P++++V   +SD     +  Y+ A VFF+      L   + K S     I  L E+N+ +   +SQ +  D   + +  +   + ++  +  L  +A +IA
Sbjct:    7 KAVVGEKIMHDVIKKVK---KKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIA 177          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: STXB1_HUMAN (Syntaxin-binding protein 1 OS=Homo sapiens GN=STXBP1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 55/176 (31.25%), Postives = 103/176 (58.52%), Query Frame = 1
Query:  166 KQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIA 690
            K +  E++++++++  K    K  WKVL++D+L+++++S  CKM DI  EG+++VEDI++RR+PLPS+EA+Y I P++++V   +SD     +  Y+ A VFF+      L   + K S     I  L E+N+ +   +SQ +  D   + +  +   + ++  +  L  +A +IA
Sbjct:    7 KAVVGEKIMHDVIKKVK---KKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIA 177          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: STXB1_BOVIN (Syntaxin-binding protein 1 OS=Bos taurus GN=STXBP1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 55/176 (31.25%), Postives = 103/176 (58.52%), Query Frame = 1
Query:  166 KQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIA 690
            K +  E++++++++  K    K  WKVL++D+L+++++S  CKM DI  EG+++VEDI++RR+PLPS+EA+Y I P++++V   +SD     +  Y+ A VFF+      L   + K S     I  L E+N+ +   +SQ +  D   + +  +   + ++  +  L  +A +IA
Sbjct:    7 KAVVGEKIMHDVIKKVK---KKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIA 177          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: STXB1_CHICK (Syntaxin-binding protein 1 OS=Gallus gallus GN=STXBP1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 55/176 (31.25%), Postives = 103/176 (58.52%), Query Frame = 1
Query:  166 KQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIA 690
            K +  E++++++++  K    K  WKVL++D+L+++++S  CKM DI  EG+++VEDI++RR+PLPS+EA+Y I P++++V   +SD     +  Y+ A VFF+      L   + K S     I  L E+N+ +   +SQ +  D   + +  +   + ++  +  L  +A +IA
Sbjct:    7 KAVVGEKIMHDVIKKVK---KKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTSKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPSESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIA 177          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: SEC1_DICDI (Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.357e-20
Identity = 55/160 (34.38%), Postives = 97/160 (60.62%), Query Frame = 1
Query:  160 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDE 636
            + +++ ++R+L EM+R+  T  + + WK LI+D+ +++++S  C M DI +E V++VE I   RQ LP++EAIYF+ PT +++ + ++D   + SP Y    +F +S +  E+       S  + RI   +E+NLE+ AI+SQ F  D    L +LF  +
Sbjct:    4 SLRELCKDRILNEMVRTI-TPEASNGWKALIVDQDSLRVISACCGMFDIMEEKVTVVEKIDNPRQRLPNLEAIYFLTPTAQSIDLLINDFKKKSSPHYLAIHLFLTSKLP-EVEFKKLSASLAVHRIKTFKEINLEFLAIESQAFHLDQNNTLFQLFSPD 161          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: STXB3_HUMAN (Syntaxin-binding protein 3 OS=Homo sapiens GN=STXBP3 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 49/152 (32.24%), Postives = 90/152 (59.21%), Query Frame = 1
Query:  238 WKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSP-LYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFG-DEENSRRGDACLNVMASRI 687
            WK++++D+ T K+++  CKM D+ +EG+++VE+I++ R+P+  M+A+YFI PT ++V  FL D + +S   YK A+++F+      L   IK  ++    I   +E+N+ +   +SQ +  D   A    +  D  N++  DA +  MA +I
Sbjct:   32 WKIMLLDEFTTKLLASCCKMTDLLEEGITVVENIYKNREPVRQMKALYFITPTSKSVDCFLHDFASKSENKYKAAYIYFTDFCPDNLFNKIK--ASCSKSIRRCKEINISFIPHESQVYTLDVPDAFYYCYSPDPGNAKGKDAIMETMADQI 181          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: STXB3_MOUSE (Syntaxin-binding protein 3 OS=Mus musculus GN=Stxbp3 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 48/152 (31.58%), Postives = 88/152 (57.89%), Query Frame = 1
Query:  238 WKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRS-PLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFG-DEENSRRGDACLNVMASRI 687
            WK++++D+ T K++S  CKM D+ +EG++++E+I++ R+P+  M+A+YFI PT ++V  FL D   +S   YK A+++F+      L   IK  ++    I   +E+N+ +   +SQ +  D   A    +  D  N+ R +  +  MA +I
Sbjct:   32 WKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISPTPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIK--ASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYSPDPSNASRKEVVMEAMAEQI 181          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: ROP_DROME (Protein ROP OS=Drosophila melanogaster GN=Rop PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 49/141 (34.75%), Postives = 84/141 (59.57%), Query Frame = 1
Query:  208 SAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRS-PLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELF 627
            ++  G     W+VL++DKL ++++S   KM +I+ EG++LVEDI+++R+PLP+M+AIY I P+ E+V   + D    + P+Y+ A VFF+     EL   + K S    +I  L+E+N+ +   + Q F  D     + L+
Sbjct:   29 TSAAGAGGMEWRVLVVDKLGMRMVSACTKMHEISAEGITLVEDINKKREPLPTMDAIYLITPSDESVRGLIRDFENPARPMYRYAHVFFTEVCPEELFNDLCK-SCAAGKIKTLKEINIAFLPYECQVFSLDSPDTFQCLY 168          
The following BLAST results are available for this feature:
BLAST of FC929888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
STXB1_RAT6.721e-2131.25Syntaxin-binding protein 1 OS=Rattus norvegicus GN... [more]
STXB1_PONAB6.721e-2131.25Syntaxin-binding protein 1 OS=Pongo abelii GN=STXB... [more]
STXB1_MOUSE6.721e-2131.25Syntaxin-binding protein 1 OS=Mus musculus GN=Stxb... [more]
STXB1_HUMAN6.721e-2131.25Syntaxin-binding protein 1 OS=Homo sapiens GN=STXB... [more]
STXB1_BOVIN6.721e-2131.25Syntaxin-binding protein 1 OS=Bos taurus GN=STXBP1... [more]
STXB1_CHICK8.778e-2131.25Syntaxin-binding protein 1 OS=Gallus gallus GN=STX... [more]
SEC1_DICDI4.357e-2034.38Protein transport protein sec1 OS=Dictyostelium di... [more]
STXB3_HUMAN3.688e-1932.24Syntaxin-binding protein 3 OS=Homo sapiens GN=STXB... [more]
STXB3_MOUSE4.817e-1931.58Syntaxin-binding protein 3 OS=Mus musculus GN=Stxb... [more]
ROP_DROME2.391e-1834.75Protein ROP OS=Drosophila melanogaster GN=Rop PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC34001E07EF PostHarvC1 Citrus clementina cDNA clone C34001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929888 ID=FC929888; Name=FC929888; organism=Citrus clementina; type=EST; length=692bp
GTTTGCTAAAGTCTAAACTCCTTCTGCCTGTCTGCTTTGATCAGCACGCC
ATCTCTCTGTCTTCGCAACTCGTCCTCTTTTTTGGATCCATCGATTAACT
GTAAAAACGACATGTCGTACTCCGATTCGGACTCCTCTTCCTACGGCGGC
GACTACAAAAACTTTAAGCAAATCAGCCGCGAAAGATTGTTGTATGAAAT
GCTTCGCTCAGCAAAAACAGGGACCTCGAAATCTACATGGAAGGTACTCA
TCATGGATAAACTTACCGTTAAGATAATGTCTCATTCGTGCAAGATGGCT
GACATCACACAGGAAGGAGTTTCATTGGTAGAAGACATACACAGACGAAG
GCAGCCATTGCCCTCCATGGAGGCTATATACTTCATTCAACCAACCAAAG
AGAATGTTATCATGTTCTTGTCAGATATGTCCGGAAGATCGCCTTTATAT
AAGAAGGCATTTGTTTTCTTCAGTTCACCTATATCAAGGGAACTGGTGAC
TCACATCAAGAAGGATTCAACTGTTCTACCTCGCATAGGTGCACTAAGAG
AGATGAATTTGGAGTATTTTGCAATAGACAGCCAGGGCTTTGTCACTGAT
GATGAAAGGGCCTTGGAGGAACTCTTTGGAGATGAGGAAAATTCTCGCAG
AGGTGATGCGTGTTTGAATGTGATGGCTTCCCGCATTGCTAC
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