FC929888

Overview
NameFC929888
Unique NameFC929888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: STXB2_PIG (Syntaxin-binding protein 2 (Fragment) OS=Sus scrofa GN=STXBP2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 46/104 (44.23%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  166 KQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGR-SPLYKKAFVFFS 474
            K +  E++L  ++RS K       WKVLIMD  +++I+S  CKM+DI  EG+++VEDI++RR+P+PS+EAIY + PT+++V   + D  G  +  YK A VFF+
Sbjct:    7 KAVVGEKILSGVIRSVK---KDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPSLEAIYLLSPTEKSVQALIXDFRGXPTXTYKAAHVFFT 107          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: SLY1_SCHPO (Protein sly1 OS=Schizosaccharomyces pombe GN=sly1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 49/161 (30.43%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  196 EMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELV---THIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLN 669
            E+  S +  ++   WKVLI DK   + +S   +++D+ + GV++  +I   RQP+  + AIYF+QPT+EN+ + + D+S    LY+ A+V FSS ISR L+     +   +     I  + +  L Y  ++S  F       L ++F    N    +A +N
Sbjct:   32 ELESSPQHASNFPIWKVLIFDKAGSETISSVLRISDLRKHGVTVHMNITSFRQPIADVPAIYFVQPTQENIELIIEDLS--KGLYESAYVCFSSTISRALLEQFAELASKTNTSHMIHQVYDQYLNYVVLESDFF----SLQLPKIFHTFHNPSSDEALIN 186          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: SCFD1_MOUSE (Sec1 family domain-containing protein 1 OS=Mus musculus GN=Scfd1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 38/144 (26.39%), Postives = 75/144 (52.08%), Query Frame = 1
Query:  172 ISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISR---ELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFV 594
            ++ +R+L   +   K  T +  WKVLI D+    I+S    + ++   G++L   +H  R P+P + A+YF+ PT+EN+     D+  R+ LY+  ++ F S ISR   E + +    ++ + ++  + +  L +  ++   FV
Sbjct:   18 VALKRMLNFNVPHVKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRLCQDL--RNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFV 159          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: SCFD1_HUMAN (Sec1 family domain-containing protein 1 OS=Homo sapiens GN=SCFD1 PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 38/144 (26.39%), Postives = 75/144 (52.08%), Query Frame = 1
Query:  172 ISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISR---ELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFV 594
            ++ +R+L   +   K  T +  WKVLI D+    I+S    + ++   G++L   +H  R P+P + A+YF+ PT+EN+     D+  R+ LY+  ++ F S ISR   E + +    ++ + ++  + +  L +  ++   FV
Sbjct:   21 VALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRMCQDL--RNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFV 162          
The following BLAST results are available for this feature:
BLAST of FC929888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
STXB2_PIG3.122e-1844.23Syntaxin-binding protein 2 (Fragment) OS=Sus scrof... [more]
SLY1_SCHPO3.024e-1330.43Protein sly1 OS=Schizosaccharomyces pombe GN=sly1 ... [more]
SCFD1_MOUSE6.305e-1126.39Sec1 family domain-containing protein 1 OS=Mus mus... [more]
SCFD1_HUMAN8.235e-1126.39Sec1 family domain-containing protein 1 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionC34001E07EF PostHarvC1 Citrus clementina cDNA clone C34001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929888 ID=FC929888; Name=FC929888; organism=Citrus clementina; type=EST; length=692bp
GTTTGCTAAAGTCTAAACTCCTTCTGCCTGTCTGCTTTGATCAGCACGCC
ATCTCTCTGTCTTCGCAACTCGTCCTCTTTTTTGGATCCATCGATTAACT
GTAAAAACGACATGTCGTACTCCGATTCGGACTCCTCTTCCTACGGCGGC
GACTACAAAAACTTTAAGCAAATCAGCCGCGAAAGATTGTTGTATGAAAT
GCTTCGCTCAGCAAAAACAGGGACCTCGAAATCTACATGGAAGGTACTCA
TCATGGATAAACTTACCGTTAAGATAATGTCTCATTCGTGCAAGATGGCT
GACATCACACAGGAAGGAGTTTCATTGGTAGAAGACATACACAGACGAAG
GCAGCCATTGCCCTCCATGGAGGCTATATACTTCATTCAACCAACCAAAG
AGAATGTTATCATGTTCTTGTCAGATATGTCCGGAAGATCGCCTTTATAT
AAGAAGGCATTTGTTTTCTTCAGTTCACCTATATCAAGGGAACTGGTGAC
TCACATCAAGAAGGATTCAACTGTTCTACCTCGCATAGGTGCACTAAGAG
AGATGAATTTGGAGTATTTTGCAATAGACAGCCAGGGCTTTGTCACTGAT
GATGAAAGGGCCTTGGAGGAACTCTTTGGAGATGAGGAAAATTCTCGCAG
AGGTGATGCGTGTTTGAATGTGATGGCTTCCCGCATTGCTAC
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