FC929889

Overview
NameFC929889
Unique NameFC929889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1166..1860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.039e-45
Identity = 98/230 (42.61%), Postives = 141/230 (61.30%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKWEE 684
            VNG+D+ +WNP TDK +   Y     +  K   K  LQ E+GLPV  ++P+IGFIGRL+ QKG D++  AIP  ++E+VQ ++LG+G    E  +   E  Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+AM+YGTVP+V  TGGL DTVE  F  F          A  P+ V  +   +R A++T+     +   +MK GM +D +W   A+++E+
Sbjct:  407 VNGIDINDWNPTTDKCLPHHYSVDD-LSGKAKCKAELQKELGLPVREDVPLIGFIGRLDYQKGIDLIKMAIPELMREDVQFVMLGSGDPIFEGWMRSTESSYKDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVET-FNPFGAKGEEGTGWAFSPLTVDKMLWALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQ 634          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.772e-45
Identity = 105/237 (44.30%), Postives = 140/237 (59.07%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLL 693
            VNG+D  +WNP  D ++       Y   TV   K   K ALQ E+GLPV  ++PVI FIGRL+ QKG D++A A+P    ++VQ+I+LGTG++ +E  L +LE  + ++ RG   F+I LAH + AGAD +L+PSRFEPCGL QL+AM YGTVP+V + GGL DTVE    +    +G      EA   +D         R   T    +   + K GM QDLSW   AK +EE LL
Sbjct:  511 VNGIDTTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGLGWTFEKAEANRLIDALGHCLNTYRNYRT----SWEGLQKRGMMQDLSWDNAAKLYEEVLL 743          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: SSG2_PEA (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.314e-45
Identity = 97/237 (40.93%), Postives = 143/237 (60.34%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEETLL 693
            VNG+D ++WNP  D Y+       Y+  T+   K   K ALQ E+GLPV  ++P+I FIGRL+ QKG D++A AIP  +  +VQ+++LGTG+  +E+ L++ E  + +K R    F++ +AH I AG+D +L+PSRFEPCGL QL+AM YGTVP+V   GGL DTV+  F  F            D  +   +   +   L TY    ++   + + GM+QDLSW   A+++EE L+
Sbjct:  514 VNGVDTKDWNPQFDAYLTSDGYTNYNLKTLQTGKRQCKAALQRELGLPVREDVPIISFIGRLDHQKGVDLIAEAIPWMMSHDVQLVMLGTGRADLEQMLKEFEAQHCDKIRSWVGFSVKMAHRITAGSDILLMPSRFEPCGLNQLYAMSYGTVPVVHGVGGLRDTVQP-FNPFDESGVG---WTFDRAEANKLMAALWNCLLTYKDYKKSWEGIQERGMSQDLSWDNAAQQYEEVLV 746          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: SSY22_ORYSJ (Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 101/239 (42.26%), Postives = 144/239 (60.25%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT--QALAEMMKNGMAQDLSWKGPAKKWEETLL 693
            VNG+D+ EWNP  D+++       Y   T+   K   KEALQ ++GL V  ++P+IGFIGRL+ QKG DI+  A+P    ++VQ+++LGTG+  +E+ L + E  + +K RG   F++ LAH I AGAD +L+PSRFEPCGL QL+AM YGTVP+V + GGL DTV   + F    +G      EA   +D       +   L TY    ++   +   GMAQDLSW   A+ +E+ L+
Sbjct:  456 VNGIDMAEWNPEVDEHLQSDGYANYTFETLDTGKKQCKEALQRQLGLQVRDDVPLIGFIGRLDHQKGVDIIGDAMPWIAGQDVQVVMLGTGRPDLEEMLRRFESEHNDKVRGWVGFSVQLAHRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFADTGLGWTFDRAEANRMID------ALGHCLNTYRNYKESWRGLQARGMAQDLSWDHAAELYEDVLV 688          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSI (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.301e-43
Identity = 96/237 (40.51%), Postives = 143/237 (60.34%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEETLL 693
            VNG+D +EWNP  D ++       Y  +++   KP  K ALQ E+GL V  ++P+IGFIGRL+ QKG DI+  A+P    ++VQ+++LG+G++ +E  L++ E  +  K RG   F++ +AH I AGAD +++PSRFEPCGL QL+AM YGTVP+V + GGL DTV   F  F+        +  +P     +   +   L TY    ++   +   GM+QDLSW   A+ +EE L+
Sbjct:  572 VNGIDYREWNPEVDVHLQSDGYANYTVASLDSGKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTV-SAFDPFEDTGLGWTFDRAEP---HKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLV 804          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSJ (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.075e-42
Identity = 95/237 (40.08%), Postives = 144/237 (60.76%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEETLL 693
            VNG+D +EWNP  D ++       Y  +++  +KP  K ALQ E+GL V  ++P+IGFIGRL+ QKG DI+  A+P    ++VQ+++LG+G++ +E  L++ E  +  K RG   F++ +AH I AGAD +++PSRFEPCGL QL+AM YGTVP+V + GGL DT+   F  F+        +  +P     +   +   L TY    ++   +   GM+QDLSW   A+ +EE L+
Sbjct:  572 VNGIDYREWNPEVDVHLQSDGYANYTVASLDSSKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTM-SAFDPFEDTGLGWTFDRAEP---HKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLV 804          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA2_NITOC (Glycogen synthase 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.647e-41
Identity = 97/236 (41.10%), Postives = 134/236 (56.78%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 678
            +NG D Q W+P  D +I  +YD  T    K   K ALQ   GLP D  +PV+GF+GRL EQKG D++  A+P  + E +Q++ LG G++  +  L+QL   YP +      ++  LAH + AGAD  L+PSRFEPCGL QL+A+RYGTVPI   TGGL DT+         +E  TGF     S           +A+ T ++RALA Y  ++    +   GMAQ+ SW+  AK +
Sbjct:  248 LNGADYQRWDPRHDPFIEKRYD-QTCWSHKASNKLALQRRYGLPEDDTLPVLGFVGRLVEQKGIDLILGALPKLLAEKIQVVFLGEGEERHQNALQQLASRYPNQIGVSISYDERLAHGVQAGADIFLMPSRFEPCGLTQLYALRYGTVPIARRTGGLSDTIVDATEKNLRQELATGFTFTESS----------PSALLTAIQRALACYAQSRQWRRLALTGMAQNFSWQTSAKAY 472          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_ANADF (Glycogen synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.457e-41
Identity = 92/228 (40.35%), Postives = 140/228 (61.40%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 681
            +NG+DV+EW+P TD+++  +Y A+  +  K   K ALQ E+GLP   ++P++  IGRL EQKG D++ AA+   +  ++Q+++LGTG+  +E+   +     P++      F+  LAH + AGAD  L+PSRFEPCGL Q++++RYGT+P+V + GGL DTVE+ F G+  G+         P    A+   VRRAL  +   +A   MM  GMA D SW   A+ +E
Sbjct:  245 LNGIDVEEWDPATDRHLPARYSAAD-LSGKAACKSALQRELGLPERPDVPLVAMIGRLAEQKGLDLVVAALGELLARDLQLVLLGTGRPELEEAFRRAARERPDRMAARIGFDEGLAHRMEAGADLFLMPSRFEPCGLNQMYSLRYGTIPVVRAVGGLEDTVED-FDGWSRGT-GFKFRDYHP---QAMLLAVRRALEAHRDRRAWRAMMLRGMALDFSWDRSAQAYE 466          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 94/229 (41.05%), Postives = 128/229 (55.90%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT-QALAEMMKNGMAQDLSWKGPAKKWEE 684
            +NG+D + WNP  D +I  KY    + D K   KE L A  G+      P+I FIGR+  QKG DI+  A+P+ IK  +  I  GTG+   E ++ +L+  YP K      F+  LAH I AGAD +L+PSR+EPCGL QL AMRYGT+PI   TGGL DTVE+  TGF    +S           +A++  + R +  Y   Q   EM++  M +D SW   +KK+ E
Sbjct:  264 INGIDYKIWNPEEDPFIAKKYGLQNIND-KQKNKEDLIALAGINSSLQDPIIAFIGRMVYQKGIDIVVDAMPNLIKNGISFIFEGTGESYYEHKIRELQNSYPSKVFAFIGFDEALAHKIYAGADSLLVPSRYEPCGLSQLIAMRYGTIPICRKTGGLSDTVEDKVTGFLFSEYS----------SSALTHAISRFIEIYNNKQKFLEMIREAMKRDFSWSNSSKKYIE 481          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_ANAD2 (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 94/228 (41.23%), Postives = 137/228 (60.09%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 681
            +NG+DV  W+P  D ++   + A   +  K   K ALQ EVGLPV   +PV G + RL EQKG D++AAA+P  +  +VQ+++LG+G    E+   +    +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++++RYGTVP+V + GGL DTVE+ F GF  G+     E        A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  246 LNGIDVHAWDPARDPHLPAHFGAGD-LTGKAACKAALQREVGLPVRPEVPVAGLVTRLAEQKGIDLVAAALPALLARDVQVVLLGSGDAAYEQAFARAAREHPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRAVGGLADTVED-FDGFARGTGFRFSEYTP----QALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
The following BLAST results are available for this feature:
BLAST of FC929889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
SSY1_WHEAT1.039e-4542.61Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
SSY21_ORYSJ1.772e-4544.30Soluble starch synthase 2-1, chloroplastic/amylopl... [more]
SSG2_PEA2.314e-4540.93Granule-bound starch synthase 2, chloroplastic/amy... [more]
SSY22_ORYSJ9.721e-4442.26Soluble starch synthase 2-2, chloroplastic/amylopl... [more]
SSY23_ORYSI6.301e-4340.51Soluble starch synthase 2-3, chloroplastic/amylopl... [more]
SSY23_ORYSJ1.075e-4240.08Soluble starch synthase 2-3, chloroplastic/amylopl... [more]
GLGA2_NITOC2.647e-4141.10Glycogen synthase 2 OS=Nitrosococcus oceani (strai... [more]
GLGA_ANADF3.457e-4140.35Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA_THEYD5.897e-4141.05Glycogen synthase OS=Thermodesulfovibrio yellowsto... [more]
GLGA_ANAD25.897e-4141.23Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]

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Properties
Property NameValue
Genbank descriptionC34001E08EF PostHarvC1 Citrus clementina cDNA clone C34001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929889 ID=FC929889; Name=FC929889; organism=Citrus clementina; type=EST; length=695bp
GTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAAATATAT
AGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTCTTCTGA
AGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCT
GTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGATATTCT
TGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCC
TTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATA
CTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGC
GCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTG
AACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCT
ATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTAC
AGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAG
TAGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTAT
GGTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGACCT
TTCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAA
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