FC929889

Overview
NameFC929889
Unique NameFC929889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1166..1860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_METJA (Probable glycogen synthase OS=Methanocaldococcus jannaschii GN=glgA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 45/122 (36.89%), Postives = 77/122 (63.11%), Query Frame = 1
Query:  124 GLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI-KENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 486
            G+  D   P+IGF+GR   QKG + +  AIP  + K +++ + L  G + +E++L+ L   +  +   +  +++PL+ ++ AG+D+I++PS +EPCGL+Q+ AM Y T  I   TGGL DT+
Sbjct:  290 GVDGDIETPLIGFVGRATHQKGFNTMFEAIPELLEKHDIRFVFLTKGDRDIEERLKNLANEHDGRILALIGYSLPLSSLVFAGSDWIIMPSYWEPCGLVQMEAMAYCTPVIATETGGLKDTI 411          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: MOK12_SCHPO (Cell wall alpha-1,3-glucan synthase mok12 OS=Schizosaccharomyces pombe GN=mok12 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 59/161 (36.65%), Postives = 85/161 (52.80%), Query Frame = 1
Query:   13 DVQEWNPLTDKYIGVKYDASTVMDAK-PLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGT-----GKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL 474
            D++  N LTD  + V +    V++AK  LLK+  Q    L VD +  ++ F+GR   QKG D++A   P  + E NVQ+I +G      G+   EK LEQ+   +P +      F   +   + AG DF LIPSR EP GL+ +   R G + I + TGGL
Sbjct: 1423 DLKLLNHLTDDPVDVDF----VLEAKRKLLKKQTQEWANLDVDPSAQLLVFVGRWSHQKGIDLIADLAPKLLTEHNVQLITIGPVIDLHGQFAAEK-LEQIAKRFPTRVLCKPVFTA-VPPFLFAGTDFALIPSRDEPFGLVAVEFGRKGVLCIGSRTGGL 1577          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: MOK14_SCHPO (Cell wall alpha-1,3-glucan synthase mok14 OS=Schizosaccharomyces pombe GN=mok14 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 54/157 (34.39%), Postives = 77/157 (49.04%), Query Frame = 1
Query:  100 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGT-----GKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD------TVEEGFTGFQMGSFSVDC 534
            K   Q   GL +D    ++ F+GR   QKG DILA   P  +++ N+Q+IV+G      GK   EK +  +E  YP +     +F + L   I  GADF LIPSR EP GL+ +   R G + I +  GGL +      +VE   T + +      C
Sbjct:  532 KRKAQEWAGLTIDDEADLLVFVGRWSVQKGIDILADLAPTLLEKFNIQLIVVGPLIDLYGKFAAEKFMYIME-RYPGRVFSKPEF-VHLPPFIFEGADFALIPSRDEPFGLVAVEFGRRGAICIGSRVGGLGEMPGWWYSVESSSTAYLLKQLEKSC 686          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: AGS1_SCHPO (Cell wall alpha-1,3-glucan synthase ags1 OS=Schizosaccharomyces pombe GN=ags1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 62/184 (33.70%), Postives = 86/184 (46.74%), Query Frame = 1
Query:   37 TDKYIGVKYDASTVMD-----AKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGT-----GKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD------TVEEGFTGFQMGSFSVDCE 537
            TD+ +  K  A T +D     +K   K   Q   GL V+    ++ F+GR   QKG D++A   P  ++   VQ+I +G      GK   EK L+ L+  YP +     KF   L   I +GADF LIPSR EP GL+ +   R G + I A  GGL        +VE   T   +  F   C+
Sbjct: 1396 TDEIVDDKAVAITDIDPDMEKSKVEHKRLAQEWAGLEVNEKYDLLVFVGRWSSQKGIDLIADIAPSLLESYKVQLICVGPIIDLYGKFAAEK-LDVLQKKYPTRVFSQPKFT-QLPPYIFSGADFALIPSRDEPFGLVAVEFGRKGALGIGARVGGLGQMPGWWYSVESSATPHLLKQFEQACQ 1577          
The following BLAST results are available for this feature:
BLAST of FC929889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_METJA8.286e-1936.89Probable glycogen synthase OS=Methanocaldococcus j... [more]
MOK12_SCHPO2.335e-1336.65Cell wall alpha-1,3-glucan synthase mok12 OS=Schiz... [more]
MOK14_SCHPO5.752e-1234.39Cell wall alpha-1,3-glucan synthase mok14 OS=Schiz... [more]
AGS1_SCHPO7.512e-1233.70Cell wall alpha-1,3-glucan synthase ags1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionC34001E08EF PostHarvC1 Citrus clementina cDNA clone C34001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929889 ID=FC929889; Name=FC929889; organism=Citrus clementina; type=EST; length=695bp
GTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAAATATAT
AGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTCTTCTGA
AGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCT
GTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGATATTCT
TGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCC
TTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATA
CTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGC
GCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTG
AACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCT
ATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTAC
AGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAG
TAGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTAT
GGTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGACCT
TTCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAA
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