FC929889

Overview
NameFC929889
Unique NameFC929889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1166..1860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_THELT (Glycogen synthase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glgA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.673e-38
Identity = 88/228 (38.60%), Postives = 135/228 (59.21%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D  E+NP TDK I V YD   + + K + K  LQ E+ L V  ++P+IG I RL +QKG D++   + + +  ++Q +VLGTG K  E+  + +E  YP+K     KF++ LA  I A +D  L+PSR+EPCGL Q++++RYGTVPIV  TGGL D+V+E    +   +   +       D A +  TV +A+  Y  +     +++KN M  D+SW   AK++
Sbjct:  251 LNGIDYSEYNPATDKRIYVNYDIDHI-EKKKMNKSELQKELNLQVRDDVPLIGMINRLVDQKGLDLIEKIVDYMMMFDIQFVVLGTGDKKYEEFFKNIEKKYPQKISSNMKFDVDLAQKIYAASDMFLMPSRYEPCGLGQMYSLRYGTVPIVRYTGGLADSVKE----YDPKTRDGNGFGFREYDTAHLLETVAKAVYFYKKEKDHWGKVVKNAMKTDVSWDRSAKQY 473          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_ACICJ (Glycogen synthase OS=Acidiphilium cryptum (strain JF-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.673e-38
Identity = 90/236 (38.14%), Postives = 127/236 (53.81%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D   WNP TD+++  +YD + +  A+ + K A+QA +GL  D    + G + RL  QKG D++  A+P       Q+ VLGTG+  +E  L +     P +   +  F   L+H+I  GAD IL+PSRFEPCGL QL A RYG +P+V+  GGLVDTV +           TG Q G          PV  A +S  +RR  A Y      + M +N MA D+SW  PA+ +
Sbjct:  245 LNGLDTATWNPATDEHLAARYDVANLA-ARAVNKRAVQARMGLAPDPRALLFGVVSRLAGQKGIDLIIEALPVLDALGAQLAVLGTGETGIEASLREAVAARPGRVAAIIGFEESLSHLIQGGADAILVPSRFEPCGLTQLAAQRYGAIPVVSLVGGLVDTVIDANPVAISAGVATGIQFG----------PVSEAGLSDGLRRTAALYADPDKWSRMQRNAMALDVSWTEPARNY 469          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_THESQ (Glycogen synthase OS=Thermotoga sp. (strain RQ2) GN=glgA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 92/228 (40.35%), Postives = 130/228 (57.02%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D + +NP TD+YI V YD +  ++ K   K  LQ E+GLPV++   V G I RL  QKG D+L   + + +  ++QI+VLGTG +  E    + +  YP+K     KF++ LA  I AGAD  L+PSR+EPCGL Q+ +MRYGT+P+V  TGGL DTV+E    +   S           D A +   V +AL  Y  +      +M N M  DLSW   AK++
Sbjct:  251 LNGIDYELYNPATDRYIYVNYDVNR-LELKWENKVKLQEELGLPVNKETAVAGLISRLVPQKGLDLLVDVMDYLMLFDLQIVVLGTGDEQYENAFRKFQERYPDKVSANIKFDVELAQKIYAGADIFLMPSRYEPCGLGQMFSMRYGTIPVVRYTGGLADTVKE----YDPQSMEGTGFGFKKYDSAHLLKAVSKALHFYYREKDHWRRIMTNAMNTDLSWDRSAKEY 473          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_THEP1 (Glycogen synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 92/228 (40.35%), Postives = 130/228 (57.02%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D + +NP TD+YI V YD +  ++ K   K  LQ E+GLPV++   V G I RL  QKG D+L   + + +  ++QI+VLGTG +  E    + +  YP+K     KF++ LA  I AGAD  L+PSR+EPCGL Q+ +MRYGT+P+V  TGGL DTV+E    +   S           D A +   V +AL  Y  +      +M N M  DLSW   AK++
Sbjct:  251 LNGIDYELYNPATDRYIYVNYDVNR-LELKWENKVKLQEELGLPVNKETAVAGLISRLVPQKGLDLLVDVMDYLMLFDLQIVVLGTGDEQYENAFRKFQERYPDKVSANIKFDVELAQKIYAGADIFLMPSRYEPCGLGQMFSMRYGTIPVVRYTGGLADTVKE----YDPQSMEGTGFGFKKYDSAHLLKAVSKALHFYYREKDHWRRIMTNAMNTDLSWDRSAKEY 473          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: SSY3_SOLTU (Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 92/238 (38.66%), Postives = 132/238 (55.46%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQ-----LEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDT---VEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 684
            VNG+D   W+PL DK+I + Y +  V++ K   KEALQ ++GL    ++P++G I RL  QKG  ++  AI   ++ N Q+++LG+   P  +        QL   Y ++AR    ++ PL+H+I AGADFIL+PS FEPCGL QL AMRYG++P+V  TGGL DT   V+      Q      +  + D  D   V   + RAL+ +  G      + K  M QD SW  PA  + E
Sbjct:  985 VNGIDPDIWDPLNDKFIPIPYTSENVVEGKTAAKEALQRKLGLK-QADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRVQNNFVNLANQLHSKYNDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQQCGLEPNGFSFDGADAGGVDYALNRALSAWYDGRDWFNSLCKQVMEQDWSWNRPALDYLE 1221          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA1_GEOMG (Glycogen synthase 1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 91/236 (38.56%), Postives = 134/236 (56.78%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE------GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT--YGTQALAEMMKNGMAQDLSWKGPAKKWEE 684
            +NG+D ++WNP  D YI  +Y A+  +  K L K  LQ   GLP   ++P+ G + RL +QKG DILA AI   +  +VQ ++LG G+         ++  YP+K      +N PL+H I AGADF L+PS FEPCGL Q++++RYGT+PIV +TGGL D+VE         TGF+  S           D  A+  TV  A+ T  +   A+  ++ N MA+  +W+  A ++E+
Sbjct:  256 LNGVDYEDWNPEVDPYIAARYSAAD-LSGKKLCKRDLQRTFGLPERDDVPLFGMVSRLVKQKGVDILAEAIHRILALDVQFVMLGAGEPWTHFYFGDIKNAYPDKFNIFVGYNNPLSHQIEAGADFFLMPSAFEPCGLNQMYSLRYGTLPIVRATGGLDDSVENFDEKTLVGTGFKFWS----------RDAGALFDTVGWAVHTWYHRKDAMERLIANAMAKRFTWEDAAARYED 480          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_THEMA (Glycogen synthase OS=Thermotoga maritima GN=glgA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.041e-37
Identity = 92/228 (40.35%), Postives = 129/228 (56.58%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D + +NP TD+YI V YD +  ++ K   K  LQ E+GLPV++   V G I RL  QKG D+L   + +    ++QI+VLGTG +  E    + +  YP+K     KF++ LA  I AGAD  L+PSR+EPCGL Q+ +MRYGT+P+V  TGGL DTV+E    +   S           D A +   V +AL  Y  +      +M N M  DLSW   AK++
Sbjct:  251 LNGIDYELYNPATDRYIYVNYDVNR-LELKWENKVKLQEELGLPVNKETAVAGLISRLVPQKGLDLLVDVMDYLTLFDLQIVVLGTGDEQYENAFRKFQERYPDKVSANIKFDVELAQKIYAGADIFLMPSRYEPCGLGQMFSMRYGTIPVVRYTGGLADTVKE----YDPQSMEGTGFGFKKYDSAHLLKAVSKALHFYYREKDHWRRIMTNAMNTDLSWDRSAKEY 473          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_RHORT (Glycogen synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glgA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.041e-37
Identity = 86/227 (37.89%), Postives = 124/227 (54.63%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D   WNP TD Y+    D +     K + K+ L+  +GL  D + P+ G + R   QKG D++ AA+P  I    Q+ +LG G   +E  L  +   YP  A     ++  LAH+I   ADF+L+PSRFEPCGL QL+A+RYGT+P+V  TGGL D+V     G        D    D     A+   + RA+  Y  +A L ++ + GM+QD SWK  AK++
Sbjct:  249 LNGIDSNAWNPQTDPYLAAPIDGADPAPGKRINKDMLKRRMGLDADGDRPLFGLVSRFVAQKGIDLVVAALPGMIAGGAQVAILGAGDTGLEAALNDIVGRYPGAAAVHVGYDEHLAHLIEGAADFLLVPSRFEPCGLTQLYALRYGTIPVVRRTGGLADSVSHLDDGPNGTGIVFDHALPD-----ALEWAIGRAMTLYRDKATLNKVRQRGMSQDFSWKRSAKEY 470          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_BACC1 (Glycogen synthase OS=Bacillus cereus (strain ATCC 10987) GN=glgA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.360e-37
Identity = 93/222 (41.89%), Postives = 127/222 (57.21%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSW 657
            VNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G    EK  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV+  +  TG   G    +  A D +       TVRRA+  Y  + + E ++K  M +D SW
Sbjct:  246 VNGIDTSVYNPETDSYITAQYDADSLYE-KSKNKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSGDSEYEKFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLH------TVRRAIEFYHDKPVWEQLVKQAMTEDYSW 460          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_EXIS2 (Glycogen synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=glgA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.319e-37
Identity = 85/227 (37.44%), Postives = 133/227 (58.59%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSW 657
            +NG+D ++++P TD+++   YD  TV + K   K ALQ E+GLPV+ ++P+ GF+ RL +QKG D+LA  +P   + + Q I+LG+G+   E   +    + P+K      F++ LA  I AG+D  L+PSRFEPCGL QL +M+YG++PIV  TGGL DTV+       EG  GF   +++   E +D          ++R + TY  +     +++  M +D SW
Sbjct:  249 LNGIDYRQFSPETDEHLVENYDVKTVEEGKAANKAALQQELGLPVNPDVPLFGFVSRLVDQKGIDLLAHILPDLFELDAQFIILGSGEAEYEGLFQHASTIRPDKVASYIGFDVGLAQRIYAGSDAFLMPSRFEPCGLSQLISMKYGSLPIVRETGGLRDTVQPFNQFTLEG-NGFSFSNYNAQ-EFLD---------AIKRTIETYHDKPVFKHLIETAMQEDFSW 464          
The following BLAST results are available for this feature:
BLAST of FC929889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_THELT4.673e-3838.60Glycogen synthase OS=Thermotoga lettingae (strain ... [more]
GLGA_ACICJ4.673e-3838.14Glycogen synthase OS=Acidiphilium cryptum (strain ... [more]
GLGA_THESQ6.103e-3840.35Glycogen synthase OS=Thermotoga sp. (strain RQ2) G... [more]
GLGA_THEP16.103e-3840.35Glycogen synthase OS=Thermotoga petrophila (strain... [more]
SSY3_SOLTU7.970e-3838.66Soluble starch synthase 3, chloroplastic/amyloplas... [more]
GLGA1_GEOMG7.970e-3838.56Glycogen synthase 1 OS=Geobacter metallireducens (... [more]
GLGA_THEMA1.041e-3740.35Glycogen synthase OS=Thermotoga maritima GN=glgA P... [more]
GLGA_RHORT1.041e-3737.89Glycogen synthase OS=Rhodospirillum rubrum (strain... [more]
GLGA_BACC11.360e-3741.89Glycogen synthase OS=Bacillus cereus (strain ATCC ... [more]
GLGA_EXIS22.319e-3737.44Glycogen synthase OS=Exiguobacterium sibiricum (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001E08EF PostHarvC1 Citrus clementina cDNA clone C34001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929889 ID=FC929889; Name=FC929889; organism=Citrus clementina; type=EST; length=695bp
GTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAAATATAT
AGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTCTTCTGA
AGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCT
GTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGATATTCT
TGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCC
TTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATA
CTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGC
GCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTG
AACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCT
ATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTAC
AGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAG
TAGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTAT
GGTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGACCT
TTCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAA
back to top