FC929889

Overview
NameFC929889
Unique NameFC929889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1166..1860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_BACCQ (Glycogen synthase OS=Bacillus cereus (strain Q1) GN=glgA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 93/231 (40.26%), Postives = 132/231 (57.14%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEE 684
            VNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G    E+  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV+  +  TG   G    +  A D +       TVRRA+  Y  + + E ++K  M +D SW+  A  +++
Sbjct:  246 VNGIDTSVYNPETDSYITAQYDADSLYE-KNENKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSGDSEYEQFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLH------TVRRAIEFYHDKPVWEQLVKQAMTEDYSWEKSALAYKK 469          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_ACIBL (Glycogen synthase OS=Acidobacteria bacterium (strain Ellin345) GN=glgA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 90/229 (39.30%), Postives = 133/229 (58.08%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D  EW+P TD++I  K+ A ++  AK   K  L  E GLP +  +PV+G + R   QKG D++        +E    +VLG+G K  E  + +L   YP +      ++  LAH I AG+D  L+PSR+EPCGL Q++++RYGTVPIV +TGGL DT+E  +  T    G   V+    D +D      TVR+AL  +  + A  ++M+NGMA+D SW   AK++
Sbjct:  248 LNGVDYSEWSPETDRFIAAKFSADSLA-AKAQDKADLLREFGLP-ETKLPVVGIVSRFAAQKGFDLIQQVGDRLAREEAIFVVLGSGDKTYEDLMRRLSKQYPNRFAVRVAYDNALAHKIEAGSDMFLMPSRYEPCGLNQIYSLRYGTVPIVRATGGLDDTIENWDPITNRGTGFKFVEYSGEDMLD------TVRKALELFKDKTAWQKLMRNGMARDFSWNTAAKEY 468          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA1_GEOSL (Glycogen synthase 1 OS=Geobacter sulfurreducens GN=glgA1 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 91/232 (39.22%), Postives = 133/232 (57.33%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 684
            +NG+D +EWNP TD +I   Y  S  +  K L K  +Q   GLP   ++P+ G +GRL +QKG DILA AI   +  +VQ+++LG G+         +   YPEK      +N  L+H I AG+DF ++PS FEPCGL Q++++RYGT+PIV +TGGL D+V    E+  TG     +S D +A+       V T  RR        A+A ++ N MA+  +W+  A ++EE
Sbjct:  256 LNGVDYEEWNPETDPHIVANYSRSD-LSGKKLCKRDVQRFFGLPERDDVPLFGLVGRLVKQKGIDILAEAIHRILALDVQVVMLGAGEPWSHFYFGDVRNEYPEKFGLYIGYNNGLSHRIEAGSDFFVMPSAFEPCGLNQMYSLRYGTLPIVRATGGLDDSVENFDEQNLTGNGFKFWSHDADALFDTVGWTVHTWYRR------KDAMAALIGNAMAKRFTWEDSAARYEE 480          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOSL (Glycogen synthase 2 OS=Geobacter sulfurreducens GN=glgA2 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.166e-37
Identity = 99/241 (41.08%), Postives = 130/241 (53.94%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK------FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 681
            VNG+D  EWNP  DK I   Y A  +   K   K  LQ E+G+P   ++P+IG + RL EQKG D++   +P   +  +Q ++LGTG          LE L   +++G A       FN PLA  I AG+D  L+PSRFEPCGL QL AMRYGTVP+V  TGGL DTV        EG TGF    F+ D          A    + RALA Y   ++   +M+ GM +D+SW   A ++E
Sbjct:  250 VNGIDTDEWNPAADKRIFRNYSARALA-GKAADKLELQRELGMPAAPSVPLIGMVSRLAEQKGIDLVLELLPRLAESELQFVLLGTGNACY------LERLNSFRSKGAANISINLGFNDPLAPKIYAGSDLFLMPSRFEPCGLSQLIAMRYGTVPVVRHTGGLRDTVVDVTRHPREG-TGFTFEDFTAD----------ACWEAIERALAGYRDRESWRRIMRRGMHRDVSWHNAAGRYE 472          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_GEOSF (Glycogen synthase OS=Geobacter sp. (strain FRC-32) GN=glgA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.747e-37
Identity = 90/230 (39.13%), Postives = 128/230 (55.65%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 684
            +NG+D + WNP TD+ I   +        K   K+ALQ  +GL +  +IP++G + RL EQKG D+L A +P   K  +Q+++LGTG +   K L++   L  +       F+  LA  I AG+D  L+PSR+EPCGL Q+ A+RYG VP+V  TGGL DT+ +E     +   FS      D     A+   + RA+  Y  +A   +MMK GMA D SW   A K+EE
Sbjct:  250 LNGIDYEHWNPATDRGISKNFTPGAPA-GKAANKKALQKRLGLEIAEDIPLVGMVSRLTEQKGLDLLEALLPRIAKAKLQLVLLGTGDEKYLKLLQEFAALGTDNVSVNIGFHPELAPQIYAGSDIFLMPSRYEPCGLGQMIALRYGAVPVVRKTGGLADTIFDERDQPKEPNGFS-----FDEYTPEALWEALSRAVEAYSDKAAWKKMMKRGMAGDFSWNTSALKYEE 473          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_CLOPE (Glycogen synthase OS=Clostridium perfringens GN=glgA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.747e-37
Identity = 91/231 (39.39%), Postives = 127/231 (54.98%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 684
            VNG+D  E+NP  D  I   +   T+ D K L K ALQ E+GLP++ +IP+I  + RL  QKG D++       ++ NVQ+++LGTG    E   + L+ LYP K     KF+  LAH I A +D  L+PS FEPCGL QL A+RYG +PIV  TGGL DT+     +TG   G    +    D + V      +  AL TY  + +   ++   M  D SW   A+K++E
Sbjct:  252 VNGIDYDEFNPSKDSLIAKNFSVKTIED-KVLNKLALQKELGLPINPDIPMISIVSRLTNQKGCDLIVNIANRLLQRNVQLVILGTGDYNYENHFKGLQELYPTKVSANIKFDNGLAHRIYASSDIFLMPSLFEPCGLGQLIALRYGAIPIVRETGGLKDTIHSYNKYTGIGNGFSFTNYNHNDLMHV------IELALETYDDKEIWRSLIIQAMDSDNSWNKSAEKYKE 475          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_CLONN (Glycogen synthase OS=Clostridium novyi (strain NT) GN=glgA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.747e-37
Identity = 92/229 (40.17%), Postives = 133/229 (58.08%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV--EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA-TYGTQALAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D    NP TD ++  KYD +  ++AK   KE LQ  + LP +R+IP+IG + RLEEQKG +++   I   ++EN+Q++VLGTG +  E   +     YP+K      F+  LA  I A +D  L+PSRFEPCG+ QL A+RYG+VPIV  TGGL DTV     FTG   G       A D      +  T++RA+   Y     +++++ GM  D SW+  A+K+
Sbjct:  247 LNGIDTDVNNPSTDMFLFDKYDVNN-LEAKARNKEKLQEMLHLPKNRDIPMIGIVARLEEQKGFELIKEVIEELLQENIQLVVLGTGDQRYEDMFKFFAWKYPDKLSANIYFDGGLAQKIYAASDMFLMPSRFEPCGIGQLIALRYGSVPIVRETGGLNDTVFSYNEFTGEGNGFSFTSFNARD------MLYTIKRAIGFYYDKDVWSKLVQRGMNGDYSWEKAAEKY 468          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_BACCR (Glycogen synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=glgA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.747e-37
Identity = 92/231 (39.83%), Postives = 130/231 (56.28%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEE 684
            VNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G    E+  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV   +  TG   G    +  A D +       T+ RA+  Y  + + E ++K  M +D SW+  A  ++E
Sbjct:  246 VNGIDTSVYNPETDSYIKAQYDAESLYE-KSENKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSGDSEYEQFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVHSYDEETGEGNGFSFTNFNAHDMLH------TIHRAIEFYHDKPVWEQLVKQAMTEDYSWEQSALAYKE 469          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_BACC4 (Glycogen synthase OS=Bacillus cereus (strain B4264) GN=glgA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.747e-37
Identity = 92/231 (39.83%), Postives = 130/231 (56.28%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEE 684
            VNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G    E+  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV   +  TG   G    +  A D +       T+ RA+  Y  + + E ++K  M +D SW+  A  ++E
Sbjct:  246 VNGIDTSVYNPETDSYIKAQYDAESLYE-KSENKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSGDSEYEQFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVHSYDEETGEGNGFSFTNFNAHDMLH------TIHRAIEFYHDKPVWEQLVKQAMTEDYSWEQSALAYKE 469          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPS (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.812e-37
Identity = 90/233 (38.63%), Postives = 124/233 (53.22%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 678
            +NG+D + W+P  D+ I   YD  T+  A+   K+ALQA  GL  +    + G I RL  QKG D+L   +P  + +  Q+ +LG G  P+E       + YP +   V  ++  LAH I AGAD +L+PSRFEPCGL QL A+RYG VP+VA  GGL DTV +       TG   G  FS       PV    ++  + +  A Y   A    +  NGM  D+SWK PA+ +
Sbjct:  248 LNGVDTKVWDPSADQLIPATYDVETI-GARARNKQALQARFGLRAESGALLFGVISRLSWQKGLDMLLEVLPGMLADGAQLALLGAGDAPLEAGFRDAALKYPGQVGAVIGYDEALAHQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-------PVTADMLTAALTKTRALYADHATWRNLQINGMTTDVSWKNPAQHY 472          
The following BLAST results are available for this feature:
BLAST of FC929889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_BACCQ3.029e-3740.26Glycogen synthase OS=Bacillus cereus (strain Q1) G... [more]
GLGA_ACIBL3.029e-3739.30Glycogen synthase OS=Acidobacteria bacterium (stra... [more]
GLGA1_GEOSL3.029e-3739.22Glycogen synthase 1 OS=Geobacter sulfurreducens GN... [more]
GLGA2_GEOSL5.166e-3741.08Glycogen synthase 2 OS=Geobacter sulfurreducens GN... [more]
GLGA_GEOSF6.747e-3739.13Glycogen synthase OS=Geobacter sp. (strain FRC-32)... [more]
GLGA_CLOPE6.747e-3739.39Glycogen synthase OS=Clostridium perfringens GN=gl... [more]
GLGA_CLONN6.747e-3740.17Glycogen synthase OS=Clostridium novyi (strain NT)... [more]
GLGA_BACCR6.747e-3739.83Glycogen synthase OS=Bacillus cereus (strain ATCC ... [more]
GLGA_BACC46.747e-3739.83Glycogen synthase OS=Bacillus cereus (strain B4264... [more]
GLGA_RHOPS8.812e-3738.63Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]

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Properties
Property NameValue
Genbank descriptionC34001E08EF PostHarvC1 Citrus clementina cDNA clone C34001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929889 ID=FC929889; Name=FC929889; organism=Citrus clementina; type=EST; length=695bp
GTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAAATATAT
AGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTCTTCTGA
AGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCT
GTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGATATTCT
TGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCC
TTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATA
CTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGC
GCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTG
AACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCT
ATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTAC
AGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAG
TAGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTAT
GGTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGACCT
TTCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAA
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