FC929889

Overview
NameFC929889
Unique NameFC929889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1166..1860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_BACAN (Glycogen synthase OS=Bacillus anthracis GN=glgA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.151e-36
Identity = 92/231 (39.83%), Postives = 132/231 (57.14%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEE 684
            VNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G    E+  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV+  +  TG   G    +  A D +       TV RA+  Y  +++ E ++K  M +D SW+  A  +++
Sbjct:  246 VNGIDTSVYNPETDSYITAQYDADSLYE-KNENKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSGDSEYEQFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLH------TVLRAIEFYHDKSVWEQLVKQAMTEDYSWEKSALAYKK 469          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_POLNA (Glycogen synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=glgA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36
Identity = 93/240 (38.75%), Postives = 126/240 (52.50%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 678
            +NG+D   WNP +D  I   Y A  ++D K L K ALQ E+GL VD   PV   + RL  QKG D+L  A+P  +        Q+ V G G   +E         +P +      ++  LAH I+AGAD +L+PSRFEPCGL QL+A+RYGTVP+V   GGL DTV          +  TGF  G          P   AA++  + +A+A +G  AL   +M  GMAQ+ SW   A ++
Sbjct:  249 LNGVDGAVWNPASDPLIAAPYSAD-MLDGKALCKAALQRELGLAVDAGAPVFAVVSRLTSQKGLDLLLDALPALLNFPAAGGPQLAVQGNGDPALEAAFTAAAAAHPGRVAVRLVYDEALAHRIMAGADAMLVPSRFEPCGLTQLYALRYGTVPVVRHVGGLADTVVGASEASVQADRATGFMFG----------PATPAALAQALLQAVAAHGQPALWHRLMLRGMAQNFSWTAAASQY 477          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_CELJU (Glycogen synthase OS=Cellvibrio japonicus (strain Ueda107) GN=glgA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36
Identity = 87/231 (37.66%), Postives = 139/231 (60.17%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE---GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSWKGPAKKWE 681
            +NG+D  EWNP  DK++   Y+  T+ + K   K ALQ  +GL ++ ++P++GFIGRL +QKG D++   +P  ++++ Q++VLG+G    E++L ++   YP++      ++  LAH I AG D  L+PS FEPCGL Q++++RYGT+P+V + GGL DTV+E      G     F     + D +D+ A    + RAL  Y   A  + ++ N M +D SW+  AK +E
Sbjct:  249 LNGIDTDEWNPGKDKHLAATYNRRTLGN-KTKNKLALQETLGLALNADVPLLGFIGRLVDQKGIDLILNQLPLLLEQDCQLVVLGSGFPHYEQRLREVARQYPDRVSVTIGYDEGLAHQIEAGCDIFLMPSIFEPCGLNQMYSLRYGTLPVVHAVGGLKDTVQERPLDNPGEDANGFVF--HSPDALDLHA---AILRALDAYRQPATWKQLQINAMNRDSSWEQSAKAYE 473          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_BACCZ (Glycogen synthase OS=Bacillus cereus (strain ZK / E33L) GN=glgA PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36
Identity = 92/231 (39.83%), Postives = 131/231 (56.71%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEE 684
            VNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G    E+  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV+  +  TG   G    +  A D +       TV RA+  Y  + + E ++K  M +D SW+  A  +++
Sbjct:  246 VNGIDTSVYNPETDSYITAQYDAGSLYE-KNENKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSGDSEYEQFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLH------TVLRAIEFYHDKPVWEQLVKQAMTEDYSWEKSALAYKK 469          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_THEAB (Glycogen synthase OS=Thermosipho africanus (strain TCF52B) GN=glgA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.349e-36
Identity = 89/232 (38.36%), Postives = 132/232 (56.90%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D  E+NP TDK I V Y    + + K   K+ LQ E+ LP   ++PVIG I RL +QKG DIL+  + + +  +VQ ++LGTG K  E+  + +E  +P+K      F+I LA  I A +D  L+PSR+EPCGL Q++++RYGT+P+V  TGGL DTV    EE   G   G            D A +   V RA+  +  +     ++++N M  DLSW+  A ++
Sbjct:  251 LNGIDYDEYNPETDKRIYVNYSLQEI-EKKYENKKMLQKELNLPQTNDVPVIGMITRLVDQKGLDILSEVLRYILNMDVQFVLLGTGDKKYEEMFKDIEKEFPDKMSANITFDIVLAQKIYASSDMFLMPSRYEPCGLGQMYSLRYGTIPVVRYTGGLADTVMEYDEEAMKGNGFG--------FKEYDSAYLLKAVARAVDFFKNKKGHWKKLIENAMKTDLSWERSANEY 473          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_BACHK (Glycogen synthase OS=Bacillus thuringiensis subsp. konkukian GN=glgA PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.349e-36
Identity = 91/231 (39.39%), Postives = 131/231 (56.71%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 684
            VNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G    E+  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV+  +  TG   G    +  A D +       TV RA+  Y  + +  +++K  M +D SW+  A  +++
Sbjct:  246 VNGIDTSVYNPETDSYITAQYDADSLYE-KNENKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSGDSEYEQFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLH------TVLRAIEFYHDKPVWDQLVKQAMTEDYSWEKSALAYKK 469          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_BACCN (Glycogen synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=glgA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.712e-36
Identity = 93/235 (39.57%), Postives = 127/235 (54.04%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 684
            VNG+D   +NP  D YI   YD  T+  AK   K ALQ   GLP   N P+I  + RL +QKG D++ A     ++E+VQ I+LG+G    E+  E +   Y EK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YG +PIV  TGGL DTV+      +   GF   +F+             +  TVRRAL  Y   A+  +++K  M +D SWK  A  +++
Sbjct:  246 VNGIDTSVYNPRLDSYITATYDVDTLY-AKRENKWALQHYFGLPEKENTPIISMVTRLTKQKGLDLVRAVFQEIMQEDVQCIILGSGDSEYEQFFEWMAYEYSEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALTYGVIPIVRETGGLNDTVKSYHVETKSGNGFTFTNFNAH----------DMLYTVRRALRYYEDPAVWNQLVKQAMTEDHSWKTSALAYKD 469          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_MOOTA (Glycogen synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=glgA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.460e-36
Identity = 89/232 (38.36%), Postives = 138/232 (59.48%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKWEE 684
            +NG+D +E++P TD+ + V YDA   ++ K   K ALQ E+ LPV R++PV+G I RL  QKG D+LAA +   +++++Q ++LG+G+   ++   + ++ Y +K      F+  LA  I AG D  L+PSRFEPCGL Q+ ++RYG VP+V +TGGL DT+++   + G   G    D +        A+  T+ RAL  Y  +     ++M+ GMA D SW   A  +EE
Sbjct:  247 LNGIDYEEFDPATDRRLAVNYDADH-LEKKGENKAALQREMELPV-RDVPVLGLISRLVSQKGLDLLAAILDPLMQQDLQFVLLGSGEDYYQQLFSRYKVKYRDKMAVKIGFDPVLAQHIYAGCDIFLMPSRFEPCGLGQMISLRYGAVPVVRATGGLEDTIKDLHQYPGVGNGFTFRDYQP------QALLDTINRALHVYRHEPGEWRKLMRRGMAADFSWSASAGHYEE 470          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_THISH (Glycogen synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=glgA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.743e-36
Identity = 87/228 (38.16%), Postives = 128/228 (56.14%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILA-AAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 678
            +NG+D +EW+P  D+++  +Y A   +  K   K ALQ    LP    IP++G +GR+  QKG D+L  AA P       Q++V+G+G   +E+    L   YPE       ++ PLAH + AGAD  ++PSRFEPCGL Q++++RYGTVP+V +TGGL DTV +          +   +  D     A++  + RALA Y   A    +M+ GMAQD SW   A+ +
Sbjct:  249 LNGVDYREWDPGKDRHLVARYSADD-LSGKARCKAALQHHFKLPCHSGIPLLGHVGRMVAQKGVDLLLKAAEPLLAAGEAQLVVVGSGDATLEQTARSLAERYPEHMGLHIGYSEPLAHQLEAGADIFVMPSRFEPCGLNQMYSLRYGTVPVVRNTGGLADTVVDADPAHLAARDATGIQ-FDEATPQALADALARALALYHDPACWKRLMQAGMAQDFSWGRSAEAY 474          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_DESAP (Glycogen synthase OS=Desulforudis audaxviator (strain MP104C) GN=glgA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.272e-35
Identity = 86/228 (37.72%), Postives = 130/228 (57.02%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKW 678
            VNG++  E++P TD  +   YD     + K   K  LQ E+ LPV R++PV+G I RL +QKG D++A  I   ++ ++Q+++LG G K  E    ++++ +P K      FN+ LA  I AG+D  L+PSRFEPCGL QL ++RYGT+PIV  TGGL DTV E    + + +   +       D  A+ + + RAL  Y    +A   +++N M  D SW   A ++
Sbjct:  259 VNGINYHEFDPKTDPRLHRNYDVDH-WEHKKENKFTLQREMNLPV-RDVPVLGLITRLVDQKGLDLIAEIIDELMRLDIQMVILGKGDKYYEDMFREMKVQHPGKIAAHIGFNVVLAQRIYAGSDMFLMPSRFEPCGLGQLISLRYGTIPIVRETGGLADTVNE----YDLATGGGNGFVFKEYDARALYSAIARALKLYREDQEAWGRLVRNAMEMDFSWARSAVEY 480          
The following BLAST results are available for this feature:
BLAST of FC929889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_BACAN1.151e-3639.83Glycogen synthase OS=Bacillus anthracis GN=glgA PE... [more]
GLGA_POLNA1.963e-3638.75Glycogen synthase OS=Polaromonas naphthalenivorans... [more]
GLGA_CELJU1.963e-3637.66Glycogen synthase OS=Cellvibrio japonicus (strain ... [more]
GLGA_BACCZ1.963e-3639.83Glycogen synthase OS=Bacillus cereus (strain ZK / ... [more]
GLGA_THEAB3.349e-3638.36Glycogen synthase OS=Thermosipho africanus (strain... [more]
GLGA_BACHK3.349e-3639.39Glycogen synthase OS=Bacillus thuringiensis subsp.... [more]
GLGA_BACCN5.712e-3639.57Glycogen synthase OS=Bacillus cereus subsp. cytoto... [more]
GLGA_MOOTA7.460e-3638.36Glycogen synthase OS=Moorella thermoacetica (strai... [more]
GLGA_THISH9.743e-3638.16Glycogen synthase OS=Thioalkalivibrio sp. (strain ... [more]
GLGA_DESAP1.272e-3537.72Glycogen synthase OS=Desulforudis audaxviator (str... [more]

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Properties
Property NameValue
Genbank descriptionC34001E08EF PostHarvC1 Citrus clementina cDNA clone C34001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929889 ID=FC929889; Name=FC929889; organism=Citrus clementina; type=EST; length=695bp
GTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAAATATAT
AGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTCTTCTGA
AGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCT
GTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGATATTCT
TGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCC
TTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATA
CTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGC
GCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTG
AACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCT
ATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTAC
AGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAG
TAGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTAT
GGTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGACCT
TTCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAA
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