FC929889

Overview
NameFC929889
Unique NameFC929889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1166..1860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_STRSV (Glycogen synthase OS=Streptococcus sanguinis (strain SK36) GN=glgA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.248e-35
Identity = 89/236 (37.71%), Postives = 126/236 (53.39%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE------GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEE 684
            VNG+D   +NP TD  +   +D S  +  K   K ALQ  VGLPV  ++PV+G + RL  QKG D++   + + ++E+VQII+LGTG    E+        YP+K      F++ LA  I A +D  L+PSRFEPCGL Q+ AMRYGT+P+V   GGL DTVE         TGF   +FS             ++ T + AL  Y    +A   + +  M +D SW   +K + +
Sbjct:  246 VNGIDTDIYNPETDPLLAHHFDKSD-LSGKLENKRALQERVGLPVRDDVPVVGIVSRLTRQKGFDLVVEELHNLLQEDVQIILLGTGDPAFEQAFAWFGHAYPDKLSANILFDVTLAQEIYAASDIFLMPSRFEPCGLSQMMAMRYGTLPLVHEVGGLRDTVEPYNVYTGKGTGFSFNNFS----------GYWLTWTFKEALKLYADDKEAWKSLQEQAMERDFSWDTASKAYSD 470          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_RHOBA (Glycogen synthase OS=Rhodopirellula baltica GN=glgA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.248e-35
Identity = 86/239 (35.98%), Postives = 130/239 (54.39%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN--VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT--YGTQALAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D   WNP TD ++   Y      DAK   K ALQAEVGLP D ++P++G IGRL +QKG D++   +   + E    Q +VLG+G   +E+QL +L   +PE+      F+  LAH I A +D  ++PS +EPCGL QL+++RYGT  +V  TGGL DT+ +           TGF +   S            A+   + RAL    +  +    +++ GM+QD +W+  A ++
Sbjct:  261 INGIDTNIWNPETDPHLKRNYSVVDWADAKIDNKLALQAEVGLPQDPDVPLLGLIGRLADQKGWDLILPVLKQHLAEARPTQWVVLGSGDPKIEEQLRELTEQHPEQLAAYIGFSDALAHRIEASSDMFIMPSHYEPCGLNQLYSLRYGTPCVVTKTGGLADTIVDATPENVAANLATGFHLNDSS----------AGALDHAINRALQLRYHSPEKWKNLVEFGMSQDWTWRKSADQY 489          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_ELUMP (Glycogen synthase OS=Elusimicrobium minutum (strain Pei191) GN=glgA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.248e-35
Identity = 84/231 (36.36%), Postives = 131/231 (56.71%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 684
            +NG+D   W+P  D  I   Y++ + +  K   K+ LQ  +GL V  + P++G + R++ QKG D++   +  + K+ VQ +V+GTG   MEK    L      K   VAK +  LAH + AG+D  L+PSRFEPCGL Q+ +MRYGTVPIV+  GGL+DTV+  +G T +  G F ++           +  ++  AL  Y   +    ++KNGM +D SW   A+++++
Sbjct:  251 LNGLDTGVWDPEHDPLIPYSYESFSPVKGKAACKQFLQNMLGLEVSPSKPLVGIVSRMDYQKGLDLIPGVVNKY-KDKVQFVVVGTGDSGMEKAFMALAKNNVGKVAYVAKVDEELAHRVYAGSDIFLMPSRFEPCGLSQMISMRYGTVPIVSRVGGLLDTVKGYDGITKYATGFFILE------FSETGIERSLDYALKYYQDKRCWGMLIKNGMEKDFSWTKSAQEYQD 474          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_HAEPS (Glycogen synthase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=glgA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.407e-34
Identity = 91/238 (38.24%), Postives = 126/238 (52.94%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGF---------TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 684
            +NG+D   WNP TD  I   Y  +  M  K   K  LQ   GLP D++  +   + RL EQKG+D L A I   ++ NVQ++VLG+G   +E  L   +  YP K      ++  L+H IIAG D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +           TGF    FS         D       V RA+  +G   L + + +N +AQD  W   A++++E
Sbjct:  245 LNGVDDTVWNPETDTNIVANYRPN-YMQGKGKNKSELQRYFGLPEDKDALLFVMVTRLTEQKGADFLLARIDQIMQHNVQLVVLGSGSPDLEWALRDAQSRYPHKIGLKIGYDEALSHQIIAGGDVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVNDAHKESIENRTATGF---VFSYP-------DADNFYDAVLRAINLWGKNKLWSSVRQNALAQDFGWAKVAQQYQE 471          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_NITEC (Glycogen synthase OS=Nitrosomonas eutropha (strain C91) GN=glgA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.837e-34
Identity = 86/237 (36.29%), Postives = 127/237 (53.59%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 681
            VNG+D   WNP TD Y+  KY  S  + AK   K ALQ  +GL  ++ IP+ G + RL  QKGSDI+    P       Q+ +LG+G   +E+QL  L   +P K      ++  L+H+I AG D  L+PSRFEPCGL Q+++  YGT P+V +TGGL+DTV         ++  +GF     + D          +    ++RA+  Y  T+    + +NGM +D SW+  A  ++
Sbjct:  261 VNGIDTAIWNPATDPYLVKKY-TSRNLSAKAANKLALQQTMGLENNQAIPLFGTVSRLTHQKGSDIMLQVAPMLADLPAQLALLGSGDALLEQQLAALAQAFPTKIAVRIGYDEALSHLINAGTDCFLMPSRFEPCGLNQMYSQHYGTPPVVHATGGLMDTVVDLTPETLADKSASGFHFHEMTAD----------SFMEGIKRAINAYHNTRLWKNLQRNGMQKDFSWQASASAYQ 486          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_BACSU (Glycogen synthase OS=Bacillus subtilis GN=glgA PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.837e-34
Identity = 89/235 (37.87%), Postives = 131/235 (55.74%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGF-TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWE 681
            +NG+D   + P +D YI  +YD+  +   K   K  LQ  +GLP   +IP+I  + RL +QKG D++   +   ++E ++Q++VLGTG++  E      E  + EK R    F+ PLAH I AG+D  L+PS+FEPCGL QL A++YG +PIV  TGGL DTV     EEG   GF   +F+             +  T+ RAL+ Y  Q +   ++K  M  D SW   AK+++
Sbjct:  246 LNGIDDTFYQPKSDPYIEAQYDSGDLA-CKLENKTKLQQRMGLPEKNDIPLISMVTRLTKQKGLDLVRRIMHELLEEQDIQLVVLGTGEREFEDYFRYAEFAFHEKCRAYIGFDEPLAHQIYAGSDMFLMPSKFEPCGLGQLIALQYGAIPIVRETGGLYDTVRAYQEEEGTGNGFTFSAFNAH----------DLKFTIERALSFYCQQDVWKSIVKTAMNADYSWGKSAKEYQ 469          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA2_ANAVT (Glycogen synthase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.837e-34
Identity = 91/235 (38.72%), Postives = 134/235 (57.02%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDT------VEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWE 681
            VNG+D + ++P  DK+I   + A T +D +   K ALQ EVGL V+ N  +IG + RL EQKG D++   +  F+   + Q ++LGTG +  E Q+ QL   YP +      +N  L+  I AG+D  L+PSRFEPCG+ Q+ A+RYG++PIV  TGGLVDT      V E  TG+    +       +P+D   + T + RA   +  +    E+ K GM+QD SW   AK+++
Sbjct:  225 VNGIDTEVYDPANDKFIAQTFTADT-LDKRKANKIALQEEVGLEVNSNAFLIGMVTRLVEQKGLDLVIQMLDRFMAYTDAQFVLLGTGDRYYETQMWQLASRYPGRMATYLLYNDALSRRIYAGSDAFLMPSRFEPCGISQMMALRYGSIPIVRRTGGLVDTVSHHDPVNEAGTGYCFDRY-------EPLD---LFTCMIRAWEGFRYKPQWQELQKRGMSQDFSWYKSAKEYD 448          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_SYNP6 (Glycogen synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glgA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34
Identity = 93/230 (40.43%), Postives = 133/230 (57.83%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEE 684
            +NG+DV  +NP TD  I    D  T +D +   K ALQ E+GL V+ +  +IGF+ RL EQKG D+L   +  F+   + Q +VLGTG++  E QL +L   YP +      ++  L+  I AG+D  L+PSRFEPCG+ Q+ A+RYG+VPIV  TGGLVDTV         G+     +  +P+D   + T + RA  +Y  Q    ++ + GMA DLSWK  A  +E+
Sbjct:  225 LNGIDVDSYNPATDTRIVANCDRDT-LDKRLNNKLALQKEMGLEVNPDRFLIGFVARLVEQKGIDLLLQILDRFLSYSDAQFVVLGTGERYYETQLWELATRYPGRMSTYLMYDEGLSRRIYAGSDAFLVPSRFEPCGITQMLALRYGSVPIVRRTGGLVDTVFHHDPRHAEGN-GYCFDRYEPLD---LYTCLVRAWESYQYQPQWQKLQQRGMAVDLSWKQSAIAYEQ 449          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_MARMS (Glycogen synthase OS=Marinomonas sp. (strain MWYL1) GN=glgA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34
Identity = 85/227 (37.44%), Postives = 120/227 (52.86%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D  +W+P  D  I   YD  T +  K   K AL  E GL  D N PV G + RL EQKG D++   +P  +++  +++VLG+G K +E Q  +L+  YP +      +    +H + AG D +LIPSRFEPCGL QL+A++YGT+PIV  TGGL DTV E   G +   F             A+   + R++  +  T    E  KN M  D SW     +W
Sbjct:  249 LNGVDYNQWSPEKDTLIPHNYDIDT-LSQKQANKLALLQENGLSEDLNQPVFGVVSRLTEQKGLDLVLQVMPALLEKGARLVVLGSGDKYLESQYLELQNNYPNQVSVRIGYFEDYSHRLQAGIDALLIPSRFEPCGLTQLYALKYGTLPIVRQTGGLADTVFE--DGERANGF-----VFKEASAKALQAAMERSIECFHDTNRWQEKQKNAMCYDYSWDAVTDQW 467          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_CHLPD (Glycogen synthase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=glgA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34
Identity = 79/229 (34.50%), Postives = 131/229 (57.21%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEE 684
            +NG+D ++WNP TDK I  +Y     +D K   K+ALQ E GL VD   P++G I   +E +G+D+LA ++   +  ++Q+++ G+G K  EK        YPE+     ++     H+ IAG D +L+P R E CG++QL AM YGT+P+V + GG+++T+ E   G  +GS  +  E  D   V  +S     ALA Y   +   +++   M++D +WK  A+++++
Sbjct:  260 LNGIDTRQWNPATDKLIKKRYSIER-LDGKADNKKALQEEAGLSVDAERPLVGVIAGFDEFQGADLLARSLEKLVALDMQLVICGSGDKVYEKTFRDFAEQYPEQVSLQIEYTDAFMHLAIAGMDILLMPGRIESCGMMQLFAMSYGTIPVVYAGGGIIETIHELQEG--IGSGFIFHEYTDDSLVGKLS----EALAMYSDEERWPQLVHEAMSKDFAWKSSAEEYDQ 481          
The following BLAST results are available for this feature:
BLAST of FC929889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_STRSV8.248e-3537.71Glycogen synthase OS=Streptococcus sanguinis (stra... [more]
GLGA_RHOBA8.248e-3535.98Glycogen synthase OS=Rhodopirellula baltica GN=glg... [more]
GLGA_ELUMP8.248e-3536.36Glycogen synthase OS=Elusimicrobium minutum (strai... [more]
GLGA_HAEPS1.407e-3438.24Glycogen synthase OS=Haemophilus parasuis serovar ... [more]
GLGA_NITEC1.837e-3436.29Glycogen synthase OS=Nitrosomonas eutropha (strain... [more]
GLGA_BACSU1.837e-3437.87Glycogen synthase OS=Bacillus subtilis GN=glgA PE=... [more]
GLGA2_ANAVT1.837e-3438.72Glycogen synthase 2 OS=Anabaena variabilis (strain... [more]
GLGA_SYNP62.400e-3440.43Glycogen synthase OS=Synechococcus sp. (strain ATC... [more]
GLGA_MARMS2.400e-3437.44Glycogen synthase OS=Marinomonas sp. (strain MWYL1... [more]
GLGA_CHLPD2.400e-3434.50Glycogen synthase OS=Chlorobium phaeobacteroides (... [more]

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Properties
Property NameValue
Genbank descriptionC34001E08EF PostHarvC1 Citrus clementina cDNA clone C34001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929889 ID=FC929889; Name=FC929889; organism=Citrus clementina; type=EST; length=695bp
GTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAAATATAT
AGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTCTTCTGA
AGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCT
GTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGATATTCT
TGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCC
TTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATA
CTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGC
GCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTG
AACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCT
ATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTAC
AGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAG
TAGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTAT
GGTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGACCT
TTCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAA
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