FC929891

Overview
NameFC929891
Unique NameFC929891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929891 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.036e-26
Identity = 57/155 (36.77%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  273 EKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIY 737
            E+ +H  +  G  AD+ +W+N++    +LG  T +W LFE   Y     V +  +LS+ +LFLW+ ++   N+  P++P + + E+FV   A A+R  IN  LAV REI  GR+ K+   V   LW +S VGN+ NF+T+ Y+  VL   +P +Y
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLY 156          
BLAST of FC929891 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.320e-25
Identity = 61/161 (37.89%), Postives = 95/161 (59.01%), Query Frame = 3
Query:  270 REKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS--NASTFINKSPPEIPVVTLPE---KFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIY 737
            R + ++H LG G+ ADI  W+NKK S  +LG  T +W LFE++EY  IT +C I +L + +  +WS   +S  I   PP I  + + E   +F+         +IN  +  L +I+SG+D +     +  LW+LS+VGN+ + +TL YIVFV L T+P++Y
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFN-------KINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLY 171          
BLAST of FC929891 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 55/152 (36.18%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  282 IHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIY 737
            +H  LGAG  AD+ LWRN+  +  +L  +T  W LFE   Y+L++ V ++ +L +A+ FLW+ ++T +N+  P +P + +PE+F  + A  LR  IN  L++  +I   R+  + L V   LW +S VG   N +TL YI  +L  + P++Y
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVY 164          
BLAST of FC929891 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.235e-23
Identity = 51/164 (31.10%), Postives = 92/164 (56.10%), Query Frame = 3
Query:  246 SKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIY 737
            S  +RL GR+  +H  +G GK AD+ LWR + +S GV+  +T  W++FE      +++   + ++ + + F+ +  S F N+    +P + L E+ V   A++ R ++N  L +  ++  G D + F  V+  LWLLS +G++ +  TL YI  +L  T+P +Y
Sbjct:   20 SSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALY 183          
BLAST of FC929891 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 51/153 (33.33%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  282 IHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSN-ASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIY 737
            +  +LG G  AD+ LW++K  S   L  AT  W L E +E  L+ L+C I +L + +LFLW+     F  + PP    +  P+  +     AL   +   L +L EIA G+D K FL  I  + ++  +G++ + +T+ YI  V   T+PV+Y
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPL----KALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVY 152          
BLAST of FC929891 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 41/141 (29.08%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  315 DIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIY 737
            DI+LWR KK++   L  +T+ W+L     +  IT+V  I I  ++++FLW +    ++K  PE+  + + E+FV+E   + R  +   +  +  + +  +   F   + G W+LS +GN  +F T  +I  V+  TVP ++
Sbjct:   18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLW 158          
The following BLAST results are available for this feature:
BLAST of FC929891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLJ_ARATH2.036e-2636.77Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH1.320e-2537.89Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH9.458e-2436.18Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLP_ARATH1.235e-2331.10Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH1.463e-1633.33Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]
RTNLM_ARATH6.145e-1529.08Reticulon-like protein B13 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34001E10EF PostHarvC1 Citrus clementina cDNA clone C34001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929891 ID=FC929891; Name=FC929891; organism=Citrus clementina; type=EST; length=737bp
GAAACGCTTTCTTTGCTCCTTGTTCCCACCGAGTCTCGCTCTCTCTCGTT
CTAGAGTCTAGTACATTTTTCAATTCATTTTCATCGGCGCTTACTCGGCG
GCAGAGATCTATGGCGGAACATGCACCTGAGCACGAATCAGCCGACAAAT
CACTGGTGGAGAAGATCACGGATAAGATCCATGGCCACGACTCCTCGTCA
TCTGACTCCGATGACGACAAGCCGTCGTCTATTGACGCCTTTAAGTCCAA
AGTATTCAGGCTCTTCGGAAGAGAAAAACCTATTCACCATGTCCTCGGAG
CTGGAAAACCTGCTGATATTTTCCTATGGAGGAACAAGAAAATCTCTGCT
GGTGTGCTAGGTGGAGCCACTGCAATGTGGGTTCTCTTTGAGTTGCTGGA
ATACCATTTAATCACTTTGGTCTGCCATATATCGATTCTCTCTCTGGCTG
TTCTCTTCCTGTGGTCCAATGCATCCACATTTATCAACAAATCACCGCCA
GAGATTCCAGTTGTTACACTTCCTGAGAAGTTTGTCCTTGAATTCGCCTC
TGCCTTGAGGTATGAAATCAACCGAGCCTTGGCTGTCCTGCGGGAAATTG
CGTCTGGAAGGGACTTGAAGAAGTTTCTTGGTGTCATTGCTGGCTTGTGG
CTTTTGTCTATTGTCGGTAATTGGTGCAACTTCGTGACATTATTCTACAT
TGTATTTGTTTTGCTACACACCGTGCCCGTGATTTAT
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