FC929892

Overview
NameFC929892
Unique NameFC929892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9492 contig Ccv1_Contig9492:3..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929892 vs. ExPASy Swiss-Prot
Match: PER69_ARATH (Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 65/172 (37.79%), Postives = 89/172 (51.74%), Query Frame = 2
Query:  158 MNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 673
            + FY + C   E I+R  V+   +     A   LR  FHDC V  CD S+LL       SE+    +  +R F  IE  K  +E+ CP  VSCADIL L+ RD VV  GG    +  GR DGR S+A   +  LP  +DS++   + FAA  ++   LV L+G H++G   C
Sbjct:   39 VGFYGNRCRNVESIVRSVVQSHVRSIPANAPGILRMHFHDCFVHGCDGSVLLAGNT---SERTAVPNRSLRGFEVIEEAKARLEKACPRTVSCADILTLAARDAVVLTGGQRWEVPLGRLDGRISQAS--DVNLPGPSDSVAKQKQDFAAKTLNTLDLVTLVGGHTIGTAGC 205          
BLAST of FC929892 vs. ExPASy Swiss-Prot
Match: PER1_MAIZE (Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 63/186 (33.87%), Postives = 95/186 (51.08%), Query Frame = 2
Query:  152 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD---RSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA-EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 697
            L + FY  +CP AE ++R+ V   + +    A   +R  FHDC V+ CD S+LL +      + E D    +  +R F  I+  K AVE+ CP  VSCADI+  + RD +   G     +  GRRDGR S A E ++  LP    +   + + F A  +    +V L G+H+VGR+ C     R++
Sbjct:   35 LRVGFYDTSCPNAEALVRQAVAAAFAKDAGIAAGLIRLHFHDCFVRGCDGSVLL-TVNPGGGQTERDALPNNPSLRGFDVIDAAKTAVEQSCPRTVSCADIVAFAARDSISLTGSVSYQVPAGRRDGRVSNATETVD--LPPPTSTAQSLTDLFKAKELSVEDMVVLSGAHTVGRSFCASFFKRVW 217          
BLAST of FC929892 vs. ExPASy Swiss-Prot
Match: PER1_WHEAT (Peroxidase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.075e-22
Identity = 67/183 (36.61%), Postives = 91/183 (49.73%), Query Frame = 2
Query:  152 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFG-MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 697
            L   FY  +CP+A   I+  V            S LR  FHDC    CDAS+LL     T  E+    + G +R F  I+NIK  +E  C   VSCADIL ++ RD VVALGGP   +  GRRD   + A +    LP  + S S +   F    ++   +VAL G+H++G+  C     R+Y
Sbjct:   25 LSSTFYDTSCPRALVAIKSGVAAAVSSDPRMGASLLRLHFHDCF--GCDASVLL-----TGMEQNAGPNVGSLRGFGVIDNIKTQLESVCKQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSTTASASLANSDLPGPSSSRSQLEAAFLKKNLNTVDMVALSGAHTIGKAQCSNFRTRIY 200          
BLAST of FC929892 vs. ExPASy Swiss-Prot
Match: PERA_IPOBA (Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 54/160 (33.75%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  200 IREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEM-DRSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 673
            ++E V            S +R  FHDC V  CDA LLL+ T     E+     +  +R F  IE  K+ V+ + P + VSCADIL ++ RD      G    +  GR+D R +        L   N++++  L +FAA G +   +VALLGSH++G   C
Sbjct:   75 VKEVVVAAINAEARMGASLIRLFFHDCFVDGCDAGLLLNDTATFTGEQTAAGNNNSVRGFAVIEQAKQNVKTQMPDMSVSCADILSIAARDSFEKFSGSTYTVTLGRKDARTANFTGANTQLVGPNENLTSQLTKFAAKGFNGTEMVALLGSHTIGFARC 234          
BLAST of FC929892 vs. ExPASy Swiss-Prot
Match: PER2_SOLLC (Suberization-associated anionic peroxidase 2 OS=Solanum lycopersicum GN=TAP2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 2
Query:  251 SWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 673
            S +R  FHDC V  CD  +LLD    T + ++     +  +R F  I   K++V   CP + VSCADIL ++ RD +  LGG    +  GR D   +        LP  +D+++V +++F+        +VAL G+H+VG   C
Sbjct:  102 SLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNNNSVRGFEVIAQAKQSVVDSCPNISVSCADILAIAARDSLAKLGGQTYTVALGRSDATTANFSGAINQLPAPSDNLTVQIQKFSDKNFTVREMVALAGAHTVGFARC 245          
BLAST of FC929892 vs. ExPASy Swiss-Prot
Match: PER1_SOLLC (Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 50/144 (34.72%), Postives = 73/144 (50.69%), Query Frame = 2
Query:  251 SWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 673
            S +R  FHDC V  CD  +LLD    T + ++     +   R +  I   K++V   CP V VSCADIL ++ RD V  LGG    +  GR D R +        LP   D+++V +++F+        +VAL G+H+VG   C
Sbjct:  103 SLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVINTCPNVSVSCADILAIAARDSVAKLGGQTYSVALGRSDARTANFSGAINQLPAPFDNLTVQIQKFSDKNFTLREMVALAGAHTVGFARC 246          
BLAST of FC929892 vs. ExPASy Swiss-Prot
Match: PERX_SOLTU (Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 49/144 (34.03%), Postives = 72/144 (50.00%), Query Frame = 2
Query:  251 SWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 673
            S +R  FHDC V  CD  +LLD    T + ++     +   R +  I   K++V   CP + VSCADIL ++ RD V  LGG    +  GR D R +        LP   D+++V +++F         +VAL G+H+VG   C
Sbjct:  102 SLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVIDTCPNISVSCADILAIAARDSVAKLGGQTYNVALGRSDARTANFTGALTQLPAPFDNLTVQIQKFNDKNFTLREMVALAGAHTVGFARC 245          
BLAST of FC929892 vs. ExPASy Swiss-Prot
Match: PERN_IPOBA (Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 48/163 (29.45%), Postives = 73/163 (44.79%), Query Frame = 2
Query:  200 IREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD-RSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKL 682
            ++E V            S +R  FHDC V  CD  +LL+ T     E+     S  +R F  I+  K   + +C    VSCAD+L ++ RD           +  GR+D R +        LP   D++S+   +FA  G +   +V L G+H+VG + C  L
Sbjct:   76 VKEIVDAAITAETRMGASLIRLHFHDCFVDGCDGGILLNDTANFTGEQGAPANSNSVRGFSVIDQAKRNAQTKCADTPVSCADVLAIAARDAFRKFTNQTYNITLGRQDARTANLTGANTQLPAPFDNLSIQTAKFADKGFNQREMVVLAGAHTVGFSRCAVL 238          
The following BLAST results are available for this feature:
BLAST of FC929892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER69_ARATH3.625e-2237.79Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=... [more]
PER1_MAIZE4.734e-2233.87Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1[more]
PER1_WHEAT8.075e-2236.61Peroxidase OS=Triticum aestivum PE=2 SV=1[more]
PERA_IPOBA2.688e-1733.75Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER2_SOLLC2.276e-1633.33Suberization-associated anionic peroxidase 2 OS=So... [more]
PER1_SOLLC2.276e-1634.72Suberization-associated anionic peroxidase 1 OS=So... [more]
PERX_SOLTU2.516e-1534.03Suberization-associated anionic peroxidase OS=Sola... [more]
PERN_IPOBA1.803e-1329.45Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34001E11EF PostHarvC1 Citrus clementina cDNA clone C34001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929892 ID=FC929892; Name=FC929892; organism=Citrus clementina; type=EST; length=697bp
GGAGAGATCTAAACCAAGGTTGGTCACCTTTAGTGAGTGAAGAGTAGAAG
AGAAAATGGGTACGAAAGCTGTCTTCTTGCTTTTAGCTTTGCTTTCCTTC
TCAGCTGTGTCTCTGAGGTCTGCTTTGGCAGAAAACGAAGAGGACCCAGG
TCTTGTTATGAATTTTTACAAGGATACATGCCCTCAGGCCGAGGACATTA
TCAGGGAACAAGTTAAGCTTCTGTACAAGCGCCACAAGAACACTGCATTT
TCTTGGCTTAGAAACATTTTCCATGACTGTGCTGTCCAGTCTTGTGATGC
TTCACTGCTTCTGGACTCGACAAGAAAGACCTTGTCTGAGAAGGAGATGG
ACAGGAGCTTTGGTATGAGGAACTTCAGGTACATTGAGAACATCAAAGAA
GCTGTTGAAAGAGAGTGCCCTGGTGTTGTTTCCTGTGCTGATATCCTTGT
CCTGTCCGGTAGAGATGGCGTTGTTGCGCTTGGAGGCCCTTACATTCCTC
TCAAGACAGGAAGAAGAGATGGTAGAAAAAGCAGAGCAGAGATACTTGAG
CAGTATCTCCCAGATCACAATGACAGCATGTCTGTTGTTCTTGAGAGGTT
TGCAGCCATTGGCATTGACGCCCCTGGACTTGTTGCTCTGCTAGGATCTC
ACAGTGTTGGCAGAACTCATTGTGTGAAGCTGGTGCACCGTCTGTAC
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