FC929899

Overview
NameFC929899
Unique NameFC929899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_GEOUR (Phosphoenolpyruvate carboxykinase [ATP] OS=Geobacter uraniireducens (strain Rf4) GN=pckA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.044e-38
Identity = 88/225 (39.11%), Postives = 131/225 (58.22%), Query Frame = 2
Query:   17 WGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKR-QILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIW-NAXQFGAV 685
            WGK +   + ++   L  R  A  Y++  D +F+ D F    P++R+ +R+++ +A+HSLF  NM ++ T  ELEN   P FT+ +   F          S T I +N A+R ++I GT YAGE+KK +F+V++YL+P   +++S+H   N G+ GDVA                 NR LIGDDEH W D+GV N EGGCYAK I+LS+E EP+I+    +FG +
Sbjct:   79 WGKVNRPFDPEKFDSLYKRMTA--YMHGKD-LFIQDCFAGASPKHRLPIRVIAEKAWHSLFARNMFVKATAAELENH-KPRFTVIDMPNFHAVPQIDGTNSETFIIINFAKRLVIIGGTSYAGEIKKSIFTVLNYLLPHHSKVMSMHCSANTGEKGDVAVFFGLSGTGKTTLSAAPNRSLIGDDEHGWDDDGVFNFEGGCYAKIINLSKESEPEIYETTRKFGTI 299          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_SHELP (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=pckA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.487e-38
Identity = 84/228 (36.84%), Postives = 125/228 (54.82%), Query Frame = 2
Query:    2 EHELWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            E+++ WG  +    MD    L   +R   YL   +  FV++  +  DP++   + + +  A+H LF  N+ I   PE+      P + I NA  F C+       S  ++ +N A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+G +GD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IW+A +FG V
Sbjct:   59 ENDIDWGSVNKPFAMDAFNALW--DRVATYLADKE-TFVSELEVGADPEHYQPIEVKTETAWHQLFARNLFI--VPEQFNVANKPVWQIMNAPGFECDPARDGTNSDATVIINFADRKVLLAGLKYAGEMKKSMFSVQNFLLPAKGVLPMHCSANVGSEGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTV 281          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_SHEHH (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella halifaxensis (strain HAW-EB4) GN=pckA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.487e-38
Identity = 87/228 (38.16%), Postives = 123/228 (53.95%), Query Frame = 2
Query:    2 EHELWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            E ++ WG  +   E D  T L NR     +L   D  FV++  +    ++   V++ +  A+H LF  N+ I   PEE      P + I NA  F C        S  ++ +N A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+G DGD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IW+A +FG V
Sbjct:   59 ETDIEWGSVNKPFEADAFTALWNRVET--FLADKD-TFVSNLEVGASKEHYQPVKVTTQYAWHQLFARNLFI--VPEEFNAADKPVWQIMNAPDFECVPERDGTHSDATVIINFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAKGVLPMHCSANVGNDGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTV 281          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_RHOP5 (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodopseudomonas palustris (strain BisA53) GN=pckA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.487e-38
Identity = 87/231 (37.66%), Postives = 128/231 (55.41%), Query Frame = 2
Query:    2 EHELWWGKGSPNIEMDEHTFLVNRERAVDYLNSLD--KVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNA-XQFGAV 685
            E  +WWG G+ +I  ++   L       D+L   +  ++F  D +   DP  ++K R+ +  A+HSLF+  +  RP    L +F  P+ TI +   F  +   H   S   + ++  R+ ++I GTQYAGEMKK +F+ ++Y +P + +L +H   N+G DGD A               D NR LIGDDEH WG +GV N EGGCYAKCI LS E EP+I+ A  +FGA+
Sbjct:   75 ESTVWWG-GNQSITAEQFETLYQ-----DFLKHAEGMQLFAQDLYGGADPSFQIKTRVFTEMAWHSLFIRTLLRRPETAALASF-VPELTIIDLASFRADPKRHGCQSENVVAIDFTRKIVLIGGTQYAGEMKKSVFTTLNYYLPDKGVLPMHCSANVGPDGDTAIFFGLSGTGKTTLSADPNRTLIGDDEHGWGKDGVFNFEGGCYAKCIKLSAEAEPEIFAASNRFGAI 298          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_PSEF5 (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=pckA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.487e-38
Identity = 84/204 (41.18%), Postives = 116/204 (56.86%), Query Frame = 2
Query:   74 ERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            +R   YL   ++ FV+   +  DP + + V++ +  A+H+LF    C+   PE+    G  ++ I NA  F C        S  ++ LN A ++++I G +YAGEMKK LFSV ++L+P   +L +H   NMG++GDV                D +RYLIGDDEH WG   V NIEGGCYAKCIDLS + EP IW A Q GAV
Sbjct:   81 DRVEAYLGERER-FVSHVHVGSDPAHYLPVKMTTETAWHNLF--GRCLFINPEQYNAGGKDEWQILNAPNFVCEPERDGTNSDGTVILNFAAKKVLIAGMRYAGEMKKALFSVQNFLLPAADVLPMHCAANMGEEGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGVGVVFNIEGGCYAKCIDLSEKNEPVIWKAIQHGAV 281          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_PHOPR (Phosphoenolpyruvate carboxykinase [ATP] OS=Photobacterium profundum GN=pckA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.487e-38
Identity = 90/229 (39.30%), Postives = 131/229 (57.21%), Query Frame = 2
Query:   11 LWW---GKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDL-NLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            LWW   GK   N  +D+  +   +      L+   ++FV D +   +P  R+ +R+++  A+ + F+ NM IRPT EEL +F  PDF + N  +    ++     +S +  + NL  +  +I GT Y GEMKKG+F++M+Y +P + I S+H   NMG++GDVA               D  R LIGDDEH W DNGV N EGGCYAK I+LS+E EPDI+NA +  A+
Sbjct:   73 LWWADQGKND-NKAIDQKVWNELKVLVTKQLSG-KRLFVVDGYCGTNPDTRLCIRVITEVAWQAHFVKNMFIRPTEEELASF-KPDFVVMNGAKCTNEKWEEQGLNSENFTVFNLTEKMQLIGGTWYGGEMKKGMFAMMNYFLPLQGIASMHCSANMGENGDVAVFFGLSGTGKTTLSTDPKRALIGDDEHGWDDNGVFNFEGGCYAKTINLSKEAEPDIYNAIRRDAL 298          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_BRAJA (Phosphoenolpyruvate carboxykinase [ATP] OS=Bradyrhizobium japonicum GN=pckA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.487e-38
Identity = 88/231 (38.10%), Postives = 128/231 (55.41%), Query Frame = 2
Query:    2 EHELWWGKGSPNIEMDEHTFLVNRERAVDYLNSLD--KVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNA-XQFGAV 685
            + ++WW  G+ +I  ++   L       D+L   +   +F  D +   DP  R+K R+ +  A+HSLF+  + IRP   EL  F TP+ TI +   F  +   H   S   + ++ AR+ ++I G+ YAGEMKK +F+ ++Y +P+R ++ +H   N+G   D A               D NR LIGDDEH WG NGV N EGGCYAKCI LS+E EP I+ A  +FGAV
Sbjct:   75 DKKMWWA-GNQSITAEQFETLYQ-----DFLKHAEGKSLFAQDLYGGADPAYRIKTRVFTELAWHSLFIRTLLIRPEAIELSTF-TPELTIIDMPSFRADPKRHGCKSENVVAIDFARKIVLIGGSYYAGEMKKSVFTTLNYYLPERGVMPMHCSANVGAKDDAAIFFGLSGTGKTTLSADPNRTLIGDDEHGWGPNGVFNFEGGCYAKCIKLSQEAEPQIYAASTRFGAV 298          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_PSESM (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas syringae pv. tomato GN=pckA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.554e-38
Identity = 88/223 (39.46%), Postives = 124/223 (55.61%), Query Frame = 2
Query:   17 WGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            WG  +     ++   L NR  A  YL   ++ FV+   +  DP + + V++ +  A+H+LF    C+   PE+    G  ++ I NA  F C+       S  ++ +N A R+++I G +YAGEMKK +FSV ++L+P   +L +H   NMG++GDV                D +RYLIGDDEH WG   V NIEGGCYAKCIDLS + EP IW A Q GAV
Sbjct:   64 WGPINRKFPAEKFDALWNRVGA--YLAERER-FVSHVHVGSDPAHYLPVKMTTETAWHNLF--GRCLFINPEQYNPAGKDEWEIQNAPWFVCDPERDGTNSDGTVIINFAARKVLIAGMRYAGEMKKAMFSVQNFLLPAVDVLPMHCAANMGEEGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGVGVVFNIEGGCYAKCIDLSEKNEPVIWKAIQHGAV 281          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_ENT38 (Phosphoenolpyruvate carboxykinase [ATP] OS=Enterobacter sp. (strain 638) GN=pckA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.554e-38
Identity = 93/230 (40.43%), Postives = 130/230 (56.52%), Query Frame = 2
Query:   11 LWW---GKG-SPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            LWW   GKG + N  + + T+   +      L+   ++F+ D F   +   R+ VR ++  A+ + F+ NM IRPT EEL++F  PDF + N  +    ++    + S   I  NL  R  +I GT Y GEMKKG+FSVM+YL+P + I S+H   N+G++GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS E EPDI++A +  A+
Sbjct:   81 LWWADKGKGKNDNKPLSQETWQHLKGLVTQQLSG-KRLFIIDAFCGANADTRLSVRFITEVAWQAHFVKNMFIRPTDEELQDF-EPDFIVMNGAKCTNPQWKEQGLNSENFIAFNLTERIQLIGGTWYGGEMKKGMFSVMNYLLPLQGIASMHCSANVGEEGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIRLSAEAEPDIFHAIRRDAL 308          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_HAEIE (Phosphoenolpyruvate carboxykinase [ATP] OS=Haemophilus influenzae (strain PittEE) GN=pckA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.948e-38
Identity = 90/229 (39.30%), Postives = 127/229 (55.46%), Query Frame = 2
Query:   11 LWWGKGSP---NIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            +WW   +    N  M++ T+   ++   + L S  ++FV D F      +R+ VRIV+  A+ + F+ NM IRPT E+L+NF  PDF + N  +     +    + S   +  NL  R  +I GT Y GEMKKG+FS+M+Y +P + + ++H   N+GKDGDVA               D  R LIGDDEH W D G+ N EGGCYAK I LS E EPDI+ A +  A+
Sbjct:   81 VWWTSETAKNDNKPMNQATWQSLKDLVTNQL-SRKRLFVVDGFCGASEHDRIAVRIVTEVAWQAHFVKNMFIRPTEEQLKNF-EPDFVVMNGSKVTNPNWKEQGLNSENFVAFNLTERIQLIGGTWYGGEMKKGMFSIMNYFLPLKGVGAMHCSANVGKDGDVAIFFGLSGTGKTTLSTDPKRELIGDDEHGWDDVGIFNFEGGCYAKTIHLSEENEPDIYRAIRRDAL 307          
The following BLAST results are available for this feature:
BLAST of FC929899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_GEOUR2.044e-3839.11Phosphoenolpyruvate carboxykinase [ATP] OS=Geobact... [more]
PCKA_SHELP3.487e-3836.84Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_SHEHH3.487e-3838.16Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_RHOP53.487e-3837.66Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodops... [more]
PCKA_PSEF53.487e-3841.18Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_PHOPR3.487e-3839.30Phosphoenolpyruvate carboxykinase [ATP] OS=Photoba... [more]
PCKA_BRAJA3.487e-3838.10Phosphoenolpyruvate carboxykinase [ATP] OS=Bradyrh... [more]
PCKA_PSESM4.554e-3839.46Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_ENT384.554e-3840.43Phosphoenolpyruvate carboxykinase [ATP] OS=Enterob... [more]
PCKA_HAEIE5.948e-3839.30Phosphoenolpyruvate carboxykinase [ATP] OS=Haemoph... [more]

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Properties
Property NameValue
Genbank descriptionC34001F06EF PostHarvC1 Citrus clementina cDNA clone C34001F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929899 ID=FC929899; Name=FC929899; organism=Citrus clementina; type=EST; length=686bp
GGAGCATGAACTTTGGTGGGGAAAGGGTTCACCTAACATTGAAATGGACG
AGCACACATTTTTGGTGAACAGAGAAAGGGCTGTTGATTACTTGAATTCT
TTGGACAAAGTTTTTGTGAATGATCAATTCTTGAACTGGGATCCACAGAA
CCGAGTCAAAGTCAGAATTGTTTCTGCAAGGGCTTACCATTCTTTGTTCA
TGCACAACATGTGTATCCGACCCACTCCTGAAGAGCTGGAGAATTTCGGT
ACTCCGGACTTCACTATATACAATGCTGGACAGTTCCCGTGTAATCGTTA
TACTCACTACATGACATCCTCCACTAGCATAGACCTTAATCTTGCTAGGA
GGGAAATGGTCATCCTCGGCACACAGTACGCCGGGGAAATGAAGAAGGGT
CTTTTCAGTGTTATGCATTATCTCATGCCTAAACGTCAAATCCTCTCCCT
TCATTCTGGCTGCAATATGGGAAAAGATGGAGATGTTGCCCTCTTCTTTG
GATTGTCAGGTACTGGAAAGACAACACTGTCTACTGATCACAATCGATAT
CTGATTGGAGACGATGAACACTGTTGGGGTGACAATGGTGTGTCAAACAT
TGAGGGTGGTTGCTATGCCAAGTGCATTGATCTCTCAAGGGAGAAGGAGC
CTGATATCTGGAATGCCATNCAGTTTGGCGCTGTGT
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