FC929899

Overview
NameFC929899
Unique NameFC929899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_SHESR (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella sp. (strain MR-7) GN=pckA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.415e-39
Identity = 82/193 (42.49%), Postives = 113/193 (58.55%), Query Frame = 2
Query:  107 KVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            ++FV+D  +  DP++   VR+ +  A+H LF  N+ I   PEE      P + I NA  F C        S  ++ LN A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+GKDGD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IW+A +FG V
Sbjct:   91 ELFVSDLEVGADPEHYQPVRVTTQYAWHQLFARNLFI--IPEEFNRQDKPVWEIINAPDFVCVPERDGTNSDAAVILNFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAQGVLPMHCSANVGKDGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTV 281          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_SHESM (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella sp. (strain MR-4) GN=pckA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.415e-39
Identity = 82/193 (42.49%), Postives = 113/193 (58.55%), Query Frame = 2
Query:  107 KVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            ++FV+D  +  DP++   VR+ +  A+H LF  N+ I   PEE      P + I NA  F C        S  ++ LN A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+GKDGD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IW+A +FG V
Sbjct:   91 ELFVSDLEVGADPEHYQPVRVTTQYAWHQLFARNLFI--IPEEFNRQDKPVWQIINAPDFVCVPERDGTNSDAAVILNFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAQGVLPMHCSANVGKDGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTV 281          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_SHESA (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella sp. (strain ANA-3) GN=pckA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.415e-39
Identity = 82/193 (42.49%), Postives = 113/193 (58.55%), Query Frame = 2
Query:  107 KVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            ++FV+D  +  DP++   VR+ +  A+H LF  N+ I   PEE      P + I NA  F C        S  ++ LN A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+GKDGD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IW+A +FG V
Sbjct:   91 ELFVSDLEVGADPEHYQPVRVTTQYAWHQLFARNLFI--IPEEFNRQDKPVWQIINAPDFVCVPERDGTNSDAAVILNFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAQGVLPMHCSANVGKDGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTV 281          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_SHEB5 (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=pckA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.415e-39
Identity = 91/228 (39.91%), Postives = 124/228 (54.39%), Query Frame = 2
Query:    2 EHELWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            E E+ WG    N   D   F     R   YL   + +FV+D  +  D ++   VR+ +  A+H LF  N+ I   PEE      P + I NA  F C+       S  ++ LN A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+GKDGD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IW+A +FG V
Sbjct:   59 EAEIEWGP--VNQAFDPGAFEGLWARVEAYLADKE-LFVSDLEVGADTEHYQPVRVTTQYAWHQLFARNLFI--IPEEFNRKNKPVWQIINAPDFVCDPARDGTNSDATVILNFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAQGVLPMHCSANVGKDGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTV 281          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_ERWCT (Phosphoenolpyruvate carboxykinase [ATP] OS=Erwinia carotovora subsp. atroseptica GN=pckA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.415e-39
Identity = 93/230 (40.43%), Postives = 130/230 (56.52%), Query Frame = 2
Query:   11 LWW---GKG-SPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            +WW   GKG + N  + + T+   +E     L+   ++F+ D F   +P +R+ VR V+  A+ + F+ NM IRP+ EELE F  PDF + N  +     +    + S   +  NL  R  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EPDI+ A +  A+
Sbjct:   81 VWWSDQGKGKNDNHPLSQETWTHLKELVTTQLSG-KRLFIIDAFCGANPDSRLSVRFVTEVAWQAHFVKNMFIRPSDEELEGF-EPDFIVMNGAKCTNPNWQEQGLNSENFVAFNLTERIQLIGGTWYGGEMKKGMFSIMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRQLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPDIFGAIKRDAL 308          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_SHEB9 (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella baltica (strain OS195) GN=pckA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.154e-39
Identity = 91/228 (39.91%), Postives = 124/228 (54.39%), Query Frame = 2
Query:    2 EHELWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            E E+ WG    N   D   F     R   YL   + +FV+D  +  D ++   VR+ +  A+H LF  N+ I   PEE      P + I NA  F C+       S  ++ LN A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+GKDGD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IW+A +FG V
Sbjct:   59 EAEIEWGP--VNQAFDPGAFEGLWARVEAYLADKE-LFVSDLEVGADTEHYQPVRVTTQYAWHQLFARNLFI--IPEEFNRKDKPVWQIINAPDFVCDPERDGTNSDATVILNFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAQGVLPMHCSANVGKDGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTV 281          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_SHEB8 (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella baltica (strain OS185) GN=pckA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.154e-39
Identity = 91/228 (39.91%), Postives = 124/228 (54.39%), Query Frame = 2
Query:    2 EHELWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            E E+ WG    N   D   F     R   YL   + +FV+D  +  D ++   VR+ +  A+H LF  N+ I   PEE      P + I NA  F C+       S  ++ LN A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+GKDGD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IW+A +FG V
Sbjct:   59 EAEIEWGP--VNQAFDPGAFEGLWARVEAYLADKE-LFVSDLEVGADTEHYQPVRVTTQYAWHQLFARNLFI--IPEEFNRKDKPVWQIINAPDFVCDPARDGTNSDATVILNFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAQGVLPMHCSANVGKDGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTV 281          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_SHEB2 (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella baltica (strain OS223) GN=pckA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.154e-39
Identity = 91/228 (39.91%), Postives = 124/228 (54.39%), Query Frame = 2
Query:    2 EHELWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            E E+ WG    N   D   F     R   YL   + +FV+D  +  D ++   VR+ +  A+H LF  N+ I   PEE      P + I NA  F C+       S  ++ LN A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+GKDGD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IW+A +FG V
Sbjct:   59 EAEIEWGP--VNQAFDPGAFEGLWARVEAYLADKE-LFVSDLEVGADTEHYQPVRVTTQYAWHQLFARNLFI--IPEEFNRKDKPVWQIINAPDFVCDPARDGTNSDATVILNFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAQGVLPMHCSANVGKDGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTV 281          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_COLP3 (Phosphoenolpyruvate carboxykinase [ATP] OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=pckA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.154e-39
Identity = 85/194 (43.81%), Postives = 116/194 (59.79%), Query Frame = 2
Query:  107 KVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            ++FV D F   D   R+KVR ++  A+ + F+ NM IRPT  ELEN+  PDF + N  +   +++    + S   +  NL  +  +I GT Y GEMKKG+FS+M+Y +P + I S+H   N+G+DGD A               D  R LIGDDEH W DNGV N EGGCYAK I+LS+E EPDI+NA +  A+
Sbjct:  113 RLFVVDTFCGADEATRLKVRFITQVAWQAHFVKNMFIRPTDAELENY-EPDFVVMNGAKTVNDKWEEQGLNSENFVAFNLTEKIQLIGGTWYGGEMKKGMFSMMNYYLPLQGIASMHCSANVGEDGDTAIFFGLSGTGKTTLSTDPKRQLIGDDEHGWDDNGVFNFEGGCYAKTINLSKENEPDIYNAIRRDAL 305          
BLAST of FC929899 vs. ExPASy Swiss-Prot
Match: PCKA_SHESH (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella sediminis (strain HAW-EB3) GN=pckA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.119e-39
Identity = 89/228 (39.04%), Postives = 125/228 (54.82%), Query Frame = 2
Query:    2 EHELWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAXQFGAV 685
            E ++ WG  +   E    T L NR  +  YL   + +FV+D  +  DP++   VR+ +  A+H LF  N+ I   PE+      P + I NA  F C        S  ++ +N A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+G  GD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IWNA +FG V
Sbjct:   59 EADIDWGTVNKPFEQTVFTALWNRVES--YLGDKE-LFVSDLEVGADPEHYQPVRVTTETAWHQLFARNLFI--VPEQFNAADKPIWQIMNAPGFECIPERDGTHSDATVIINFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAKGVLPMHCSANVGIKGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWNAIRFGTV 281          
The following BLAST results are available for this feature:
BLAST of FC929899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_SHESR2.415e-3942.49Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_SHESM2.415e-3942.49Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_SHESA2.415e-3942.49Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_SHEB52.415e-3939.91Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_ERWCT2.415e-3940.43Phosphoenolpyruvate carboxykinase [ATP] OS=Erwinia... [more]
PCKA_SHEB93.154e-3939.91Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_SHEB83.154e-3939.91Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_SHEB23.154e-3939.91Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_COLP33.154e-3943.81Phosphoenolpyruvate carboxykinase [ATP] OS=Colwell... [more]
PCKA_SHESH4.119e-3939.04Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]

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Properties
Property NameValue
Genbank descriptionC34001F06EF PostHarvC1 Citrus clementina cDNA clone C34001F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929899 ID=FC929899; Name=FC929899; organism=Citrus clementina; type=EST; length=686bp
GGAGCATGAACTTTGGTGGGGAAAGGGTTCACCTAACATTGAAATGGACG
AGCACACATTTTTGGTGAACAGAGAAAGGGCTGTTGATTACTTGAATTCT
TTGGACAAAGTTTTTGTGAATGATCAATTCTTGAACTGGGATCCACAGAA
CCGAGTCAAAGTCAGAATTGTTTCTGCAAGGGCTTACCATTCTTTGTTCA
TGCACAACATGTGTATCCGACCCACTCCTGAAGAGCTGGAGAATTTCGGT
ACTCCGGACTTCACTATATACAATGCTGGACAGTTCCCGTGTAATCGTTA
TACTCACTACATGACATCCTCCACTAGCATAGACCTTAATCTTGCTAGGA
GGGAAATGGTCATCCTCGGCACACAGTACGCCGGGGAAATGAAGAAGGGT
CTTTTCAGTGTTATGCATTATCTCATGCCTAAACGTCAAATCCTCTCCCT
TCATTCTGGCTGCAATATGGGAAAAGATGGAGATGTTGCCCTCTTCTTTG
GATTGTCAGGTACTGGAAAGACAACACTGTCTACTGATCACAATCGATAT
CTGATTGGAGACGATGAACACTGTTGGGGTGACAATGGTGTGTCAAACAT
TGAGGGTGGTTGCTATGCCAAGTGCATTGATCTCTCAAGGGAGAAGGAGC
CTGATATCTGGAATGCCATNCAGTTTGGCGCTGTGT
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