FC929900

Overview
NameFC929900
Unique NameFC929900
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15114 contig Ccv1_Contig15114:12..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929900 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.615e-40
Identity = 80/133 (60.15%), Postives = 105/133 (78.95%), Query Frame = 1
Query:  256 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNXQLFN 651
            D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++ IIE SV+PGGG+WLGGQLFSAMV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++SK+L  PN +LFN
Sbjct:   34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFN 166          
BLAST of FC929900 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 34/99 (34.34%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  283 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI 579
            +++ ++SR +  RY   +    + D    GAG +GL+ AYEL+KN   ++A+ E+  +PGGG W GG +F+ +V+ K    FL E+ I+Y+ +++++V+
Sbjct:    3 MRDVLISRLIVERYFEKLRNSLELDVAIVGAGPSGLTAAYELAKN-GFRVAVFEERNTPGGGIWGGGMMFNEIVLEKELENFLKEVEIEYEVKEDHIVV 100          
BLAST of FC929900 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.353e-12
Identity = 41/123 (33.33%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  283 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNXQLFN 651
            ++E  ++R +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W GG  F+ +VV+  A   LDE GI Y+E +    +  A    +TI SK++ +   ++FN
Sbjct:    2 LREVTITRAIVESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFN 122          
BLAST of FC929900 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 39/123 (31.71%), Postives = 66/123 (53.66%), Query Frame = 1
Query:  283 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNXQLFN 651
            ++E  +SR +   Y  D++     D    GAG +G+   Y L+K    ++AI E+ +S GGG W G   F+ +VV++ A   LDE G+DY +  N + +  +    ST+ SK + +   ++FN
Sbjct:    1 MREIEISRAIVEAYFNDLLQNLQLDIAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSVGGGIWGGAMGFNRVVVQESAREILDEFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFN 121          
BLAST of FC929900 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  283 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNXQLFN 651
            +K+ ++SR +   Y  D++   + D    GAG +G+   Y L+K    ++AI E+ +S GGG W GG  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +   ++FN
Sbjct:    2 LKDVVISRAIVESYFKDLLNNLELDVAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKIVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFN 122          
BLAST of FC929900 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  271 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNXQLFN 651
            K D IK   +SR +   YM D++ Y + D    G G +GL+  Y L++   +++A+ E+ +S GGG W GG +F+ +VV+      LDE GI  +  D    +  +   TST+ S+   +   ++FN
Sbjct:    2 KLDDIK---ISRAIVEGYMEDLLDYMEMDVAIGGGGPSGLTAGYYLAR-AGLKVALFERKLSIGGGMWGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSR-ACQAGLKIFN 123          
BLAST of FC929900 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  283 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNXQLFN 651
            ++E  +SR +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W GG  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +   ++FN
Sbjct:    2 LREVTISRAIIESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFN 122          
BLAST of FC929900 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 38/107 (35.51%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  274 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--DYDEQDNYVVIKHA 588
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WLGG L + + VR PA   LD+LG+  +YDE+++ + +  A
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADA 111          
BLAST of FC929900 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 38/107 (35.51%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  274 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--DYDEQDNYVVIKHA 588
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WLGG L + + VR PA   LD+LG+  +YDE+++ + +  A
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADA 111          
BLAST of FC929900 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 1
Query:  271 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQD 564
            +F  + E+ V+R + + +  + I   DT+    G G +GL  A EL++   + + I+E++   GGG WLGG L + + VR PA   LDEL + Y+E D
Sbjct:    5 EFADVSEAQVTRAIAKDWGNEFIDRVDTEVIIVGGGPSGLVTAKELAER-GVDVTIVEKNNYLGGGFWLGGFLMNKVTVRDPAQSVLDELDVPYEESD 101          
The following BLAST results are available for this feature:
BLAST of FC929900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
THI4_YEAST2.615e-4060.15Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_THEMA2.087e-1334.34Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_PYRHO1.353e-1233.33Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO3.935e-1231.71Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU3.935e-1232.52Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_METTH3.935e-1232.28Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_PYRAB5.140e-1233.33Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_HALSA6.712e-1235.51Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS36.712e-1235.51Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALWD5.682e-1135.71Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]

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Properties
Property NameValue
Genbank descriptionC34001F07EF PostHarvC1 Citrus clementina cDNA clone C34001F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929900 ID=FC929900; Name=FC929900; organism=Citrus clementina; type=EST; length=652bp
TCATCACTGCTGCAAATCAAATTACTTCTCATTATCAAACTTCTAAGCAG
CAGGGGGAAGGAGGGGTTAAAAAAAAAAAACATGGCAGCCATGACTTCTA
CAGCTTTCGCTCCTTCAGTTTCGTCCACCACCAATAAGCTCTTTGACTCA
TCCTTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCAT
CAAATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTC
CTTATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTT
TCTCGTGAAATGACACGCAGGTACATGACGGACATGATCACTTATGCTGA
CACTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTT
ATGAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCT
GTTAGCCCCGGCGGTGGCGCGTGGCTCGGTGGACAGCTCTTCTCTGCCAT
GGTTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACT
ACGATGAGCAAGACAACTATGTTGTGATCAAGCATGCAGCGCTGTTCACC
TCCACTATAATGAGCAAGCTCCTGGCCCGCCCCAACNGTCAGCTCTTTAA
TG
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