FC929902

Overview
NameFC929902
Unique NameFC929902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.983e-57
Identity = 110/195 (56.41%), Postives = 153/195 (78.46%), Query Frame = 3
Query:  105 G*EKMALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLA 689
            G +   +  D+ G PFIL+R QE+K RL G+DA K+++ A K VA I+RTSLGP+G+DK+L SPDG++T+TNDGATIL+QM+V++QIAKL+V+LS+SQD EIGDGTTGVVV+AG+LLEQAE L+++GIHPIRIA+GYE A ++AV+HL+ I+   +F   +   L ++  T+L SK+V++     A IAV AVL+
Sbjct:    3 GLDNAVMVRDDQGNPFILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLS 197          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 4.731e-51
Identity = 99/190 (52.11%), Postives = 149/190 (78.42%), Query Frame = 3
Query:  123 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 686
            +A DE GRPFI+++ Q  K R  GL+A+K+++ A ++VA I++TSLGP+G+DK+L SPDG++TITNDGATIL QM++DN+IAKL+V+LS+SQD EIGDGTTGVVV+A +LL+QA +L+++GIHPI+IA G++ A+++A+  LE          ++L  + L++   T+L SK+V++   R AE+AV+AV+
Sbjct:   20 VAQDEMGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVI 209          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.168e-41
Identity = 90/173 (52.02%), Postives = 129/173 (74.57%), Query Frame = 3
Query:  168 QEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 686
            Q  K + +  D +++N++A KAV+  +RTSLGP+GMDKM+Q+ +G+VTITNDGATIL+QM+V +  AK++VELSR+QD E GDGTT VVV+AG+LL+  EKLL+ GIHP  I++ ++  S  AV+ L  ++   E  L D E LV++  T+LNSK+V++   +LA IAV+AVL
Sbjct:   15 QAYKDKSKPADIRQSNINAAKAVSDAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMNVIHPAAKMLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILTEMSTPIE--LTDRESLVKSASTSLNSKVVSQHSSQLAPIAVEAVL 185          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPE_ENCCU (T-complex protein 1 subunit epsilon OS=Encephalitozoon cuniculi GN=CCT5 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.428e-39
Identity = 89/190 (46.84%), Postives = 133/190 (70.00%), Query Frame = 3
Query:  123 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV-DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL-EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 686
            L  DE G+ F  +  +++  R++G     AN+   +++A  L TSLGP GMDK+LQS D D+ +TNDGATIL++M++ +N I++L+V+LS SQD EIGDGTT VVV+A +LL+QA+ LL +G+HPI+I+EG+E+    AVEHL  I+++    ++DL E +++   T+L SK+V +   R AEI   AVL
Sbjct:    4 LLTDELGQAF-QITDEDKGCRIKGQQCILANIGVVRSIATFLSTSLGPTGMDKILQSKDEDIVVTNDGATILKEMEMTENPISRLIVQLSESQDEEIGDGTTSVVVLASALLDQAQALLGQGVHPIKISEGFEVGLGHAVEHLSEISEE----ISDLKETMMKAAKTSLGSKIVYKSLERFAEICTDAVL 188          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.155e-39
Identity = 86/183 (46.99%), Postives = 124/183 (67.76%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLA 689
            G P ++L Q  +  R  G DAQ+ N+ AG+ +A  +RT+LGPKGMDKML    GD+ +TNDG TIL++M V++  AK+++E++++Q+ E+GDGTT  VV+AG LL +AE+LL++ IHP  I  GYEMA   AVE L+ IA+  E    D E L +  MT++  K   + + +LAEI V+AV A
Sbjct:    5 GAPIVVLPQNVK--RYVGRDAQRMNILAGRIIAETVRTTLGPKGMDKMLVDELGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNIHPSVIINGYEMARNKAVEELKSIAK--EVKPEDTEMLKKIAMTSITGKGAEKAREQLAEIVVEAVRA 183          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39
Identity = 88/181 (48.62%), Postives = 124/181 (68.51%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G+P ++L   E   R  G DAQ+ N+ A + VA  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL++AE+LL++ IHP  I +GY +A+  A E LE IA+  E   +D+E L +  +T++  K     +  LAEIAV+AV
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIVAETIRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYALAAEKAQEILEGIAK--EVSPDDVETLKKAAVTSITGKAAEEEREYLAEIAVEAV 182          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 157.918 bits (398), Expect = 4.593e-38
Identity = 83/159 (52.20%), Postives = 117/159 (73.58%), Query Frame = 3
Query:  210 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 686
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL+   KLL++GIHP  I+E ++ A    +E L  +++  E  L+D E L+ +  T+LNSK+V++    L+ ++V AV+
Sbjct:   36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVE--LSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVM 192          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.999e-38
Identity = 86/181 (47.51%), Postives = 124/181 (68.51%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL++AE+LL++ IHP  I +GY +AS+ A E L+ IA+  E   +D E L++  MT +  K     +  LA++AV+AV
Sbjct:    6 GQPILIL--PEGTQRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYTLASQKAQEILDSIAK--EVKPDDEEVLLKAAMTAITGKAAEEEREYLAKLAVEAV 182          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.999e-38
Identity = 83/181 (45.86%), Postives = 122/181 (67.40%), Query Frame = 3
Query:  144 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 686
            +P  +L Q  + SR  G +AQ+ N+ AGK +A  +RT+LGPKGMDKML    GD+ ITNDG TIL +MD+ +  AK++VE++++Q+ E+GDGTT  V++AG LL++AEKL+E G+HP  IA GY  A+  A E LE I+ +     +D + L++  +T +  K   R K +LAE+ V AV+
Sbjct:    6 QPIFILPQ--DTSRYVGREAQRINILAGKVLAETVRTTLGPKGMDKMLVDSLGDIVITNDGVTILREMDISHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKEAEKLIEMGVHPTIIALGYRNAALKAQEILEEISME----ASDRDTLMKVAITAMTGKGSERAKEKLAELVVDAVM 180          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSB_THEK8 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-8) GN=thsB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.835e-38
Identity = 86/181 (47.51%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA+  +  + D E L +  MT +  K     +  LAEIAV+AV
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDSIAR--DVDVEDREILKKAAMTAITGKAAEEEREYLAEIAVEAV 182          
The following BLAST results are available for this feature:
BLAST of FC929902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
TCPE_SCHPO1.983e-5756.41T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
TCPE_YEAST4.731e-5152.11T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
TCPD_AEDTR1.168e-4152.02T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPE_ENCCU1.428e-3946.84T-complex protein 1 subunit epsilon OS=Encephalito... [more]
THS_METJA4.155e-3946.99Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THS_DESSY9.256e-3948.62Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
TCPD_HUMAN4.593e-3852.20T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
THS_PYRHO5.999e-3847.51Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THSA_METTH5.999e-3845.86Thermosome subunit alpha OS=Methanobacterium therm... [more]
THSB_THEK87.835e-3847.51Thermosome subunit beta OS=Thermococcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC34001F09EF PostHarvC1 Citrus clementina cDNA clone C34001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929902 ID=FC929902; Name=FC929902; organism=Citrus clementina; type=EST; length=689bp
GAGACTGTTCATTGTTCACTATCCAAAAAAAGCACCGAAAGTTCTACACT
CTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAA
TCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGT
TCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGAT
GCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCG
AACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACG
GTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGAT
GTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGA
CTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCAC
TTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGG
ATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGA
ACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGG
TTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGCAAG
CGCAGATTGGCTGAGATTGCTGTCAAAGCGGTTCTTGCT
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