FC929902

Overview
NameFC929902
Unique NameFC929902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 8.410e-24
Identity = 62/167 (37.13%), Postives = 94/167 (56.29%), Query Frame = 3
Query:  189 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLA 689
            R   A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L +M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  I EG+E A   A++ LE +    E    D E L+    T+L +K+       L E  V ++LA
Sbjct:   15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVKVSREM---DRETLIDVARTSLRTKVHAELADVLTEAVVDSILA 178          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPZ_HUMAN (T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 8.410e-24
Identity = 62/167 (37.13%), Postives = 94/167 (56.29%), Query Frame = 3
Query:  189 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLA 689
            R   A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L +M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  I EG+E A   A++ LE +    E    D E L+    T+L +K+       L E  V ++LA
Sbjct:   15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVKVSREM---DRETLIDVARTSLRTKVHAELADVLTEAVVDSILA 178          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPH_YEAST (T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae GN=CCT7 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.435e-23
Identity = 60/161 (37.27%), Postives = 99/161 (61.49%), Query Frame = 3
Query:  210 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTC-MTTLNSKMVNRCKRRLAEIAVKAVLA 689
            +N++A  AV   L+ +LGP G D ++ + +   TI+NDGATIL+ +DV +  AK +V++SR+QD E+GDGTT V ++AG L+++A+  LE GI    I +GY  A  +AVE +  +A       +    L++ C  T ++SK+++       ++ V AVL+
Sbjct:   28 SNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLS 188          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPW_HUMAN (T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=4)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 62/167 (37.13%), Postives = 95/167 (56.89%), Query Frame = 3
Query:  189 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLA 689
            R   A   N+ A + +  +LRT+LGPKG  KML S  GD+ +T DG  +L++M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  IAEG+E A   A+E LE +    E      + L+    T+L +K+       L E+ V +VLA
Sbjct:   15 RAQAALAVNICAARGLQDVLRTNLGPKGTMKMLASGAGDIKLTKDGNVLLDEMQIQHPTASLIAKVATAQDDVTGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLEEVKVTKEM---KRKILLDVARTSLQTKVHAELADVLTEVVVDSVLA 178          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPW_BOVIN (T-complex protein 1 subunit zeta-2 OS=Bos taurus GN=CCT6B PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.586e-22
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 3
Query:  189 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLA 689
            R   A   N+ A + +  +LRT+LGPKG  KML S  GDV +T DG  +L +M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  IAEG+E+A   A+E LE++  K E      E  +    T+L +K+  +    L E  V +VLA
Sbjct:   15 RAQAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDVKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEIAKIKALEVLEQVKIKKEM---KREIHLDVARTSLQTKVHPQLADVLTEAVVDSVLA 178          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPG_DICDI (T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.705e-22
Identity = 56/163 (34.36%), Postives = 97/163 (59.51%), Query Frame = 3
Query:  198 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 686
            +AQ+    A K+VA I++T LGPK M KM+  P G   +TNDG  IL ++DV +  AK M+ELSR+QD  +GDGTT VV++A  +L  +E  +E+ IHP  I + + MA   ++  +++ +   +  L +   +++   + + +K + +    +  +A+ AV+
Sbjct:   19 EAQQGIFLAVKSVASIIKTCLGPKAMLKMILDPMGTTVVTNDGNAILREIDVTHPAAKSMIELSRAQDENVGDGTTSVVILAAEVLASSELFIEKKIHPHYIIKAFRMALDDSLSIVDQYSVAID--LKNRPEVLKVVQSCIGTKFIGKWGSLMCNLALDAVM 179          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPB_ENCCU (T-complex protein 1 subunit beta OS=Encephalitozoon cuniculi GN=CCT2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.028e-21
Identity = 69/165 (41.82%), Postives = 96/165 (58.18%), Query Frame = 3
Query:  189 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            RG DA++  ++    V  IL+T+LGPKGM KML+     V +TNDGA IL  + +D+  A++++  S  QD+E GDGTT V ++A  L+++A KL    +HP +I  GY MA     E L  I+  FE    DL  LV+   TTL SK++     R  EI V AV
Sbjct:   15 RGDDAKRTILAGTDIVGDILKTTLGPKGMLKMLKGQH--VNVTNDGAFILNNLMIDSPSARILIGSSTGQDWEEGDGTTSVAILASLLVKEAGKL---EMHPTKILRGYRMAQAKCEEILSSIS--FEATKEDLLKLVR---TTLCSKVLRYDLERFCEICVNAV 169          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPZ_SCHPO (T-complex protein 1 subunit zeta OS=Schizosaccharomyces pombe GN=cct6 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.754e-21
Identity = 55/162 (33.95%), Postives = 90/162 (55.56%), Query Frame = 3
Query:  201 AQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 686
            A + N+SA   +  +L+++LGP G  KML    G + +T DG  +L +M + N  A  + + + +QD   GDGTT V ++ G LL+QAE  +  G+HP  I++G+ +A   A+  L+     FE    D E L+    T+L++K+ ++    LA   V A+L
Sbjct:   17 ALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFEV---DREVLLNVAKTSLSTKISSKVVESLAPAVVDAIL 175          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPW_MOUSE (T-complex protein 1 subunit zeta-2 OS=Mus musculus GN=Cct6b PE=2 SV=4)

HSP 1 Score: 102.834 bits (255), Expect = 1.754e-21
Identity = 59/167 (35.33%), Postives = 94/167 (56.29%), Query Frame = 3
Query:  189 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLA 689
            R   A   N+ A + +  +LR +LGPKG  KML S  GD+ +T DG  +L +M + +  A ++ +++ +QD+  GDGTT  V++ G LL+QA+  +  G+HP  I EG+++A   A+E L+ I  + E      E L+    T+L +K+       L E  V +VLA
Sbjct:   15 RSQAALAVNICAARGLQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASIIAKVAAAQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTKALEVLDEIKVQKEM---KREILLDVARTSLQTKVHAELADILTEAVVDSVLA 178          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPG_ENCCU (T-complex protein 1 subunit gamma OS=Encephalitozoon cuniculi GN=CCT3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 52/160 (32.50%), Postives = 96/160 (60.00%), Query Frame = 3
Query:  204 QKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            Q  +  A K ++ ++RT LGP+ M KM+ +    + +TNDG  IL ++DV +  A+ ++EL+++QD E+GDGTT VV++A  +L +   +L+R +HPIRI +    A  I ++ ++  A   +   ++ E  ++    ++ SK+ N  K  +  +A++AV
Sbjct:   21 QNESAIAAKTISSVIRTCLGPRAMQKMVLTKINSIELTNDGNAILRELDVAHPSARSLIELAKTQDDEVGDGTTSVVLLAAEILNEMTYILDRDVHPIRICKALGRALEICIKAIDGAAISLD---SNEETKIKIINGSVASKICNILKVPIGNLALEAV 177          
The following BLAST results are available for this feature:
BLAST of FC929902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
TCPZ_PONAB8.410e-2437.13T-complex protein 1 subunit zeta OS=Pongo abelii G... [more]
TCPZ_HUMAN8.410e-2437.13T-complex protein 1 subunit zeta OS=Homo sapiens G... [more]
TCPH_YEAST1.435e-2337.27T-complex protein 1 subunit eta OS=Saccharomyces c... [more]
TCPW_HUMAN1.214e-2237.13T-complex protein 1 subunit zeta-2 OS=Homo sapiens... [more]
TCPW_BOVIN1.586e-2238.32T-complex protein 1 subunit zeta-2 OS=Bos taurus G... [more]
TCPG_DICDI2.705e-2234.36T-complex protein 1 subunit gamma OS=Dictyostelium... [more]
TCPB_ENCCU1.028e-2141.82T-complex protein 1 subunit beta OS=Encephalitozoo... [more]
TCPZ_SCHPO1.754e-2133.95T-complex protein 1 subunit zeta OS=Schizosaccharo... [more]
TCPW_MOUSE1.754e-2135.33T-complex protein 1 subunit zeta-2 OS=Mus musculus... [more]
TCPG_ENCCU2.991e-2132.50T-complex protein 1 subunit gamma OS=Encephalitozo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001F09EF PostHarvC1 Citrus clementina cDNA clone C34001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929902 ID=FC929902; Name=FC929902; organism=Citrus clementina; type=EST; length=689bp
GAGACTGTTCATTGTTCACTATCCAAAAAAAGCACCGAAAGTTCTACACT
CTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAA
TCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGT
TCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGAT
GCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCG
AACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACG
GTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGAT
GTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGA
CTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCAC
TTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGG
ATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGA
ACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGG
TTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGCAAG
CGCAGATTGGCTGAGATTGCTGTCAAAGCGGTTCTTGCT
back to top