FC929902

Overview
NameFC929902
Unique NameFC929902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.280e-37
Identity = 83/181 (45.86%), Postives = 122/181 (67.40%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G+P  +L+  E   R  G DA K N+ A  A++  +R+SLGP+GMDKML    GD+ ITNDG TIL++MDV++  AK+MVE+S++QD  +GDGTT  V++AG LL+QA+ L+ + +HP  I+EGY MAS  A   ++ I+ K   G ++   L++   T+LNSK  +  K +LAEI+ +AV
Sbjct:    4 GQPIFILK--EGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTK--IGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAV 180          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.280e-37
Identity = 84/171 (49.12%), Postives = 122/171 (71.35%), Query Frame = 3
Query:  177 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLA 689
            K+R +  + +KAN+ A +AVA  +RTSLGPKGMDKM+++  GD+ I+NDG TIL+QM + + +AK++VE+S +QD E GDGTT VV+M G+LL  AEKLL +GIHP  IAE ++ A+  +VE L  ++ K    L+D E LV+   T+L+SK+V++    LA +AV  VL+
Sbjct:   14 KNREKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIKTSRGDIIISNDGHTILKQMAILHPVAKMLVEVSGAQDVEAGDGTTSVVIMTGALLGAAEKLLNKGIHPTIIAESFQRAAERSVEILLNMSTK--ISLDDKEALVRAASTSLSSKIVSQHSSFLAPLAVDCVLS 182          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37
Identity = 84/181 (46.41%), Postives = 123/181 (67.96%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL++AE+LL++ IHP  + +GY +A+  A E L+ IA+  E   +D E L++  MT +  K     +  LA++AV+AV
Sbjct:    6 GQPILIL--PEGTQRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIVIKGYMLAAEKAQEILDSIAK--EVKPDDEEVLLKAAMTAITGKAAEEEREYLAKLAVEAV 182          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.663e-37
Identity = 85/181 (46.96%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ +TNDGATIL+++D+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E LE IA K     +D E L++  MT++  K     K  LA++AV AV
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILEEIAIK--VNPDDEETLLRIAMTSITGKNAESHKELLAKLAVDAV 182          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 85/174 (48.85%), Postives = 121/174 (69.54%), Query Frame = 3
Query:  162 RQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            R++  K + +    + +N+ A KAVA  +RTSLGP+GMDKM+QS +GDVTITNDGATIL QM V +  AK++VELS++QD E GDGTT VVVMAG+LL+ A+ LL +GIHP  I+E ++ A+  A + L+ ++   +   + L  L +   T+LNSK+V++    LA +AV AV
Sbjct:   19 RERNFKDKDKPESVRNSNIVAAKAVADAVRTSLGPRGMDKMIQSGNGDVTITNDGATILNQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTISESFQSAAAEAEKILDEMSSPVDLSNDAL--LNKMATTSLNSKVVSQHSWLLAPMAVNAV 190          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 83/181 (45.86%), Postives = 122/181 (67.40%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G P I+L+  E  SR  G +A + N++A KAV   L+++ GP+GMDKML    GD+TITNDGATIL++MD+ +  AKL+V++++ QD E  DGT   V++AG L+++AE+LL + IHP  I  G++ A   A++ +E IAQK    +ND++ L +  MT+LNSK V   +  LA+I  KAV
Sbjct:   13 GIPVIILK--EGSSRTYGKEALRINIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVILAGELVKKAEELLYKEIHPTIIVSGFKKAEEQALKTIEEIAQK--VSVNDMDILKKVAMTSLNSKAVAGAREYLADIVAKAV 189          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 82/180 (45.56%), Postives = 119/180 (66.11%), Query Frame = 3
Query:  144 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            +P ++L   E  SR  G DAQ+ N+ AGK +A  +RT+LGPKGMDKML    GD+ +TNDG TIL++MD+++  AK++VE++++Q+ E+GDGTT  V++AG LL++AE LLE  IHP  IA GY  A+  A E L+ IA       +D + L++  MT +  K   + +  LAE+ V AV
Sbjct:    6 QPILVL--PEGTSRYLGRDAQRMNILAGKILAETVRTTLGPKGMDKMLVDSLGDIVVTNDGVTILKEMDIEHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKKAENLLEMEIHPTIIAMGYRQAAEKAQEILDDIA----IDASDRDTLMKVAMTAMTGKGTEKAREPLAELIVDAV 179          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 82/170 (48.24%), Postives = 120/170 (70.59%), Query Frame = 3
Query:  177 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 686
            + R +  + + +N+ A ++VA  +RTSLGPKGMDKM+Q+  G+V +TNDGATIL+ + V +  AK++V+LS +QD E GDGTT VV++AGS+L  AEKLL++GIHP  IAE ++ A+   V+ ++  A   E  L+D E L++   T+LNSK+V++    LA IAV AVL
Sbjct:   12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIE--LSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVL 179          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.521e-36
Identity = 82/181 (45.30%), Postives = 119/181 (65.75%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G P ++L+  E   R  G DAQ+ N+ A + +A  ++++LGPKGMDKML    GDV ITNDG TIL++MDV++  AK+++E++++QD E+GDGTT  VV+AG LL++AE+LL++ IHP  IA GY MA+  AVE LE IA   +  + D E L +   T +  K        L+ + V+AV
Sbjct:    6 GTPVLILK--EGTQRTVGRDAQRMNIMAARVIAEAVKSTLGPKGMDKMLVDSLGDVVITNDGVTILKEMDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKKAEELLDQDIHPTVIARGYRMAANKAVEILESIA--MDIDVEDEETLKKIAATAITGKHSEYALDHLSSLVVEAV 182          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36
Identity = 81/181 (44.75%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G P I+L+  E  SR  G +A + N++A KAV   L+T+ GP+GMDKML    GD+TITNDGATIL++MD+ +  AKL+V++++ QD E  DGT   V+ +G L+++AE+LL + IHP  I  GY+ A  +A++ +E I+ K    +ND E L +  +T+L+SK V   +  LA+I VKA+
Sbjct:   13 GIPVIILK--EGSSRTYGKEALRINIAAVKAVEEALKTTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEELLYKEIHPTIIVSGYKKAEEMAIKTIEEISTK--VSVNDTEILRKVALTSLSSKAVAGAREHLADIVVKAI 189          
The following BLAST results are available for this feature:
BLAST of FC929902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
THSB_THEAC2.280e-3745.86Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
TCPD_KLULA2.280e-3749.12T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
THS_PYRAB2.977e-3746.41Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THSA_THEK88.663e-3746.96Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
TCPD_CAEEL1.478e-3648.85T-complex protein 1 subunit delta OS=Caenorhabditi... [more]
THSB_SULTO1.930e-3645.86Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
THSB_METTH1.930e-3645.56Thermosome subunit beta OS=Methanobacterium thermo... [more]
TCPD_SCHPO1.930e-3648.24T-complex protein 1 subunit delta OS=Schizosacchar... [more]
THSA_ARCFU2.521e-3645.30Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
THSB_SULAC5.615e-3644.75Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]

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Properties
Property NameValue
Genbank descriptionC34001F09EF PostHarvC1 Citrus clementina cDNA clone C34001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929902 ID=FC929902; Name=FC929902; organism=Citrus clementina; type=EST; length=689bp
GAGACTGTTCATTGTTCACTATCCAAAAAAAGCACCGAAAGTTCTACACT
CTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAA
TCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGT
TCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGAT
GCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCG
AACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACG
GTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGAT
GTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGA
CTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCAC
TTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGG
ATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGA
ACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGG
TTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGCAAG
CGCAGATTGGCTGAGATTGCTGTCAAAGCGGTTCTTGCT
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