FC929902

Overview
NameFC929902
Unique NameFC929902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36
Identity = 84/181 (46.41%), Postives = 119/181 (65.75%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G+P ++LR  E   R  G DAQ+ N+ A + +A  +R++LGPKGMDKML    GDV ITNDG TIL+++DV++  AK+++E++++QD E+GDGTT  VV+AG LL++AE+LL++ IHP  IA GY  A+  A+E L  IA       +D E L +   T +  K       +LAEIAV AV
Sbjct:    6 GQPVLILR--EGTQRTVGRDAQRMNIMAARVIAEAVRSTLGPKGMDKMLVDSLGDVVITNDGVTILKEIDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQEIHPAIIANGYRYAAEKALEILNEIA--IPISKDDDEILKKIATTAMTGKGAEVAIDKLAEIAVNAV 182          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36
Identity = 82/181 (45.30%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G+P I++   E+  R++  DAQ+ N+ A +AVA  +R++LGPKGMDKML    GDVTITNDG TIL++MD+DN  A+++VE++ +Q+ E GDGTT  V +AG LL+ AE LLE+ IHP  I  G+ +AS  A E ++ IA++ +   +D E L +   T++  K     K  LA++ V+AV
Sbjct:    8 GQPMIIMG--EDAQRVKDRDAQEYNIRAARAVAEAVRSTLGPKGMDKMLVDSMGDVTITNDGVTILKEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLEQDIHPTAIIRGFNLASEKAREEIDDIAERVD--PDDEELLKKVAETSMTGKSSELNKELLADLIVRAV 184          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.334e-36
Identity = 82/181 (45.30%), Postives = 122/181 (67.40%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ +TNDGATIL+++D+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA + +   +D E L++   T++  K     K  LA++AV+AV
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVD--PDDEETLLKIAATSITGKNAESHKELLAKLAVEAV 182          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.334e-36
Identity = 82/181 (45.30%), Postives = 122/181 (67.40%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ +TNDGATIL+++D+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA + +   +D E L++   T++  K     K  LA++AV+AV
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVD--PDDEETLLKIAATSITGKNAESHKELLAKLAVEAV 182          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.578e-36
Identity = 81/171 (47.37%), Postives = 121/171 (70.76%), Query Frame = 3
Query:  177 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLA 689
            K+R +  + +KAN+ A +AVA  +RTSLGPKGMDKM+++  G++ I+NDG TIL+QM + + +AK++VE+S +QD E GDGTT VV++ G+LL  AEKLL +GIHP  IAE ++ A + AVE L  ++++    L D   LV+   T+L+SK+V++    LA +AV  VL+
Sbjct:   13 KNREKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIKTARGEILISNDGHTILKQMAILHPVAKMLVEVSAAQDSEAGDGTTSVVILTGALLGAAEKLLAKGIHPTIIAESFQRAGQRAVEVLLGMSKR--ISLQDRAELVRAASTSLSSKIVSQYSTFLAPLAVDCVLS 181          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.251e-35
Identity = 77/167 (46.11%), Postives = 117/167 (70.06%), Query Frame = 3
Query:  183 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            R  G DA + N+ A +A++ +++T+ GPKGMDKML    GDVTITNDGATIL++ ++ +  AK++V++++SQD E+GDGT   V++AG LL+ AE+LL++ IHP  I  GY MA   A++ L+++A+  +  LN+ E L +   T+L SK V+  +   A+IAVKAV
Sbjct:    2 RTTGRDALRTNILAARAISEMIKTTYGPKGMDKMLVDALGDVTITNDGATILDKAEIQHPAAKMLVQVAKSQDSEVGDGTKRAVILAGELLKYAEELLDKNIHPTVIISGYRMAMEEALKILDQMAEPID--LNNEELLRKVARTSLTSKAVHDAREFFADIAVKAV 166          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.634e-35
Identity = 76/182 (41.76%), Postives = 122/182 (67.03%), Query Frame = 3
Query:  144 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLA 689
            +P ++L   E   R  G DAQ+ N+ AG+ +   +R++LGPKGMDKML    GD+ +TNDG TIL++M V++  AK+++E++++Q+ E+GDGTT  VV+AG LL +AE+LL++ +HP  + +GY++A + A E L+ IA   +   +D E L +  MT++  K   + K +L E+ V+AV A
Sbjct:    5 QPVVVL--PENVKRFMGRDAQRMNILAGRIIGETVRSTLGPKGMDKMLVDDLGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNVHPTIVIKGYQLAVQKAQEVLKEIA--MDVKADDKEILHKIAMTSITGKGAEKAKEKLGEMIVEAVTA 182          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPD_YARLI (T-complex protein 1 subunit delta OS=Yarrowia lipolytica GN=CCT4 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.634e-35
Identity = 81/170 (47.65%), Postives = 120/170 (70.59%), Query Frame = 3
Query:  177 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 686
            K++ + L+ +K+N+ A +AVA  +RTSLGPKGMDKM+Q+  G V I+NDG TIL+ M V +  AK++V+LS SQD   GDGTT VV++AGSLL  A+KLL++GIHP  IAE ++ A++ A E +  +++  +  L+D E L++   T+LNSK+V++    LA + V A L
Sbjct:   12 KNKEKPLEVRKSNILAARAVADAIRTSLGPKGMDKMIQTARGQVIISNDGNTILQHMAVMHPAAKMLVDLSASQDSVAGDGTTSVVILAGSLLGAADKLLKKGIHPSIIAENFQKAAQRAAEVVMDMSKPID--LSDRETLIRAASTSLNSKIVSQFSSTLAPMLVDAAL 179          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.787e-35
Identity = 82/181 (45.30%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  147 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLA 689
            P ++L+  E   R +G +AQ+ N+ A KA+A  +RT+LGPKGMDKML    GD+ I+NDGATIL++MDV++  AK++VE+S++QD  +GDGTT  VV++G LL+QAE LL++G+HP  I+ GY +A   A + ++ IA+K      D   L +  +T L+ K        LA++ VKAV A
Sbjct:    7 PILVLK--EGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK----STDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNA 181          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.640e-35
Identity = 79/180 (43.89%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  144 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            +P I+L   E+  R  G DAQ  N++AGKAVA  +RT+LGPKGMDKML    G+V +TNDG TIL++MD+++  A ++VE++ +Q+ E+GDGTT  VV++G LL +AE LLE+ IH   +A+GY  A+  A E L+  A   +   +D E L +   T +  K     K  L+++ V+AV
Sbjct:    8 QPLIVL--SEDSQRTSGEDAQSMNITAGKAVAESVRTTLGPKGMDKMLVDSSGEVVVTNDGVTILKEMDIEHPAANMIVEVAETQETEVGDGTTTSVVVSGELLSEAETLLEQDIHATTLAQGYRQAAEKAKELLDDAA--IDVSADDTETLEKIAATAMTGKGAENAKGVLSDLVVRAV 183          
The following BLAST results are available for this feature:
BLAST of FC929902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
THSB_ARCFU5.615e-3646.41Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
THS2_HALVO5.615e-3645.30Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
THSA_THEK17.334e-3645.30Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO7.334e-3645.30Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
TCPD_ASHGO9.578e-3647.37T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
THSB_DESMO1.251e-3546.11Thermosome subunit beta (Fragment) OS=Desulfurococ... [more]
THS_METTL1.634e-3541.76Thermosome subunit OS=Methanococcus thermolithotro... [more]
TCPD_YARLI1.634e-3547.65T-complex protein 1 subunit delta OS=Yarrowia lipo... [more]
THSA_THEAC2.787e-3545.30Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THSA_HALSA3.640e-3543.89Thermosome subunit alpha OS=Halobacterium salinari... [more]

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Properties
Property NameValue
Genbank descriptionC34001F09EF PostHarvC1 Citrus clementina cDNA clone C34001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929902 ID=FC929902; Name=FC929902; organism=Citrus clementina; type=EST; length=689bp
GAGACTGTTCATTGTTCACTATCCAAAAAAAGCACCGAAAGTTCTACACT
CTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAA
TCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGT
TCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGAT
GCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCG
AACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACG
GTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGAT
GTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGA
CTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCAC
TTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGG
ATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGA
ACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGG
TTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGCAAG
CGCAGATTGGCTGAGATTGCTGTCAAAGCGGTTCTTGCT
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