FC929902

Overview
NameFC929902
Unique NameFC929902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: CH601_BURP0 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 1106a) GN=groL1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 35/127 (27.56%), Postives = 75/127 (59.06%), Query Frame = 3 
Query:  198 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 563
            D+ +A +  G   +A  ++ +LGPKG + +L+   G  T+T DG ++ +++++ +++    A+++ E++       GDGTT   V+A S++ +  K +  G++P+ +  G + A   AVE L++I++
Sbjct:   10 DSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISK 136
The following BLAST results are available for this feature:
BLAST of FC929902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
CH601_BURP08.165e-1127.5660 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]

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Properties
Property NameValue
Genbank descriptionC34001F09EF PostHarvC1 Citrus clementina cDNA clone C34001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929902 ID=FC929902; Name=FC929902; organism=Citrus clementina; type=EST; length=689bp
GAGACTGTTCATTGTTCACTATCCAAAAAAAGCACCGAAAGTTCTACACT
CTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAA
TCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGT
TCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGAT
GCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCG
AACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACG
GTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGAT
GTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGA
CTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCAC
TTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGG
ATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGA
ACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGG
TTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGCAAG
CGCAGATTGGCTGAGATTGCTGTCAAAGCGGTTCTTGCT
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