FC929902

Overview
NameFC929902
Unique NameFC929902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.640e-35
Identity = 77/171 (45.03%), Postives = 122/171 (71.35%), Query Frame = 3
Query:  177 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLA 689
            K++ +  + ++AN+ A +AVA  +RTSLGPKGMDKM+++  G++ I+NDG TIL+QM + + +AK++V++S +QD E GDGTT VV++ G+LL  A++LL +GIHP  IAE ++ A+R +VE L  I       L+D E L++   T+L+SK+V++    L+ +AV AVL+
Sbjct:   13 KNKEKPQEVRRANIVAARAVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVAKMLVDVSAAQDSEAGDGTTSVVILTGALLGAADRLLNKGIHPTIIAESFQKAARRSVETLLEICH--PVSLDDREDLIRAASTSLSSKIVSQYSSFLSPLAVDAVLS 181          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.753e-35
Identity = 80/181 (44.20%), Postives = 119/181 (65.75%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G P I+L+  E  SR  G +A +AN++A KA+   L+++ GP+GMDKML    GD+TITNDGATIL++MD+ +   KL+V++++ QD E  DGT   V++AG L ++AE LL + IHP  I  GY+ A  IA++ ++ IAQ     +ND + L +  +T+L SK V   +  LA++ VKAV
Sbjct:   12 GIPVIILK--EGSSRTYGKEALRANIAAVKAIEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQEIAQPVT--INDTDVLRKVALTSLGSKAVAGAREYLADLVVKAV 188          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.059e-34
Identity = 76/170 (44.71%), Postives = 122/170 (71.76%), Query Frame = 3
Query:  177 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 686
            K++ +  + +KAN+ A ++VA  +RTSLGPKGMDKM+++  G++ I+NDG TIL+QM + + +A+++VE+S +QD E GDGTT VV++ G+LL  AE+LL +GIHP  IA+ ++ A++ +V+ L  +  K    L+D E LV+   T+L+SK+V++    LA +AV +VL
Sbjct:   12 KNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHK--VSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVL 179          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 79/181 (43.65%), Postives = 118/181 (65.19%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G P I+L+  E  SR  G +A +AN++A KA+   L+++ GP+GMDKM     GD+TITNDGATIL++MD+ +   KL+V++++ QD E  DGT   V++AG L ++AE LL + IHP  I  GY+ A  IA++ ++ IAQ     +ND + L +  +T+L SK V   +  LA++ VKAV
Sbjct:   12 GIPVIILK--EGSSRTYGKEALRANIAAVKAIEEALKSTYGPRGMDKMFVDSLGDITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQDIAQ--PVSINDTDVLRKVALTSLGSKAVAGAREYLADLVVKAV 188          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 79/181 (43.65%), Postives = 118/181 (65.19%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAV 683
            G+P I++   ++  R++  DAQ+ N+SA +AVA  +R++LGPKGMDKML S  GDVT+TNDG TIL++MD+DN  A+++VE++ +Q+ E GDGTT  V +AG LL+ AE LLER IHP  I +GY +A+  A E ++ +A   +   +D + +     T++  K     K  L+ I   AV
Sbjct:    9 GQPMIIMG--DDAQRVKDRDAQEHNISAARAVADAVRSTLGPKGMDKMLVSSMGDVTVTNDGVTILQEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLERDIHPTAIIKGYNLAAEQAREEVDNVA--VDVDPDDKDLIRSVAETSMTGKGAELDKELLSSIIYDAV 185          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 81/170 (47.65%), Postives = 114/170 (67.06%), Query Frame = 3
Query:  147 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL------EPLVQTCMTTLNSKMV 638
            P +LL+  E  SR  G DA + N+ A K +A +LR+SLGPKG+DKML    GDVTITNDGATI++ M++ +  AKL+VE +++QD E+GDGTT  VV+AG+LLE+AE LL++ IHP  I EGY+ A   A+E L ++  + +  + DL      + L +   TTL SK +
Sbjct:    4 PVLLLK--EGTSRTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYNKALELLPQLGTRID--IKDLNSSVARDTLRKIAFTTLASKFI 169          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.864e-34
Identity = 81/170 (47.65%), Postives = 114/170 (67.06%), Query Frame = 3
Query:  147 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL------EPLVQTCMTTLNSKMV 638
            P +LL+  E  SR  G DA + N+ A K +A +LR+SLGPKG+DKML    GDVTITNDGATI++ M++ +  AKL+VE +++QD E+GDGTT  VV+AG+LLE+AE LL++ IHP  I EGY+ A   A+E L ++  + +  + DL      + L +   TTL SK +
Sbjct:    4 PVLLLK--EGTSRTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYTKALELLPQLGTRID--IRDLNSSVARDTLRKIAFTTLASKFI 169          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.171e-33
Identity = 73/163 (44.79%), Postives = 116/163 (71.17%), Query Frame = 3
Query:  198 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 686
            + +K+N+ A +AV+  +RTSLGPKGMDKM+++ +G++ I+NDGATIL+ M V +  A+++V++S +QD E GDGTT V ++ GSLL  AEKLL +GIHP  I+E ++ A+  + E L  ++ K    L+D E L++   T+L+SK+V++    L+ +AV +VL
Sbjct:   24 EVRKSNILAARAVSDAIRTSLGPKGMDKMIKTKNGEIIISNDGATILKHMAVLHPAARMLVDVSAAQDVEAGDGTTSVAILTGSLLGAAEKLLNKGIHPTLISESFQRAATRSAEVLLEMSHK--ISLDDKEALIRAASTSLSSKIVSQHSSLLSPLAVNSVL 184          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.997e-33
Identity = 76/166 (45.78%), Postives = 113/166 (68.07%), Query Frame = 3
Query:  141 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMV 638
            G P ++L+  E   R  G +A +AN+ A + +A +L++SLGP+G+DKML    GD+T+TNDGATI+++M++ +  AKL+VE++++QD E+GDGTT VVV+AG+LLE+AEKLL+  +HP  I EGY  A   A+  ++  A   E  + D   L +   TTL SK V
Sbjct:    5 GYPVLILK--EGTQRTYGREALRANILAARVLAEMLKSSLGPRGLDKMLVDAFGDITVTNDGATIVKEMEIQHPAAKLLVEVAKAQDAEVGDGTTSVVVLAGALLEKAEKLLDENLHPTIIIEGYTKAMEEALRLVDEAAVPVE--VEDDSVLRRIAETTLASKFV 166          
BLAST of FC929902 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.912e-33
Identity = 75/168 (44.64%), Postives = 117/168 (69.64%), Query Frame = 3
Query:  147 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEF-GLNDL---EPLVQTCMTTLNSKMV 638
            P +LL++  ++S   G DA K N+ A   +A +L++SLGP+G+DKML    GDVTITNDGATI+++M++ +  AKL+VE +++QD E+GDGTT  VV+AG LL++A+ LL++ IHP  I EGY+ A   ++E ++++A K +   LN L   + L +   TT++SK +
Sbjct:    5 PVLLLKEGTQRSS--GRDALKNNILAAVTLAEMLKSSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKADDLLDQNIHPTIIIEGYKKALNKSLEIIDQLATKIDVSNLNSLATRDQLKKIVYTTMSSKFI 170          
The following BLAST results are available for this feature:
BLAST of FC929902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
TCPD_CANGA3.640e-3545.03T-complex protein 1 subunit delta OS=Candida glabr... [more]
THSB_SULSO4.753e-3544.20Thermosome subunit beta OS=Sulfolobus solfataricus... [more]
TCPD_YEAST1.059e-3444.71T-complex protein 1 subunit delta OS=Saccharomyces... [more]
THSB_SULSH1.806e-3443.65Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
THSB_HALSA1.806e-3443.65Thermosome subunit beta OS=Halobacterium salinariu... [more]
THSA_SULSO5.256e-3447.65Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
THSA_SULSH6.864e-3447.65Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
TCPD_DEBHA1.171e-3344.79T-complex protein 1 subunit delta OS=Debaryomyces ... [more]
THSA_AERPE1.997e-3345.78Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
THSA_SULTO9.912e-3344.64Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]

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Properties
Property NameValue
Genbank descriptionC34001F09EF PostHarvC1 Citrus clementina cDNA clone C34001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929902 ID=FC929902; Name=FC929902; organism=Citrus clementina; type=EST; length=689bp
GAGACTGTTCATTGTTCACTATCCAAAAAAAGCACCGAAAGTTCTACACT
CTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAA
TCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGT
TCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGAT
GCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCG
AACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACG
GTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGAT
GTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGA
CTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCAC
TTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGG
ATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGA
ACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGG
TTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGCAAG
CGCAGATTGGCTGAGATTGCTGTCAAAGCGGTTCTTGCT
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