FC929905

Overview
NameFC929905
Unique NameFC929905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14130 contig Ccv1_Contig14130:7..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.813e-62
Identity = 128/211 (60.66%), Postives = 152/211 (72.04%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NI+ P TGCQK +E+DD++ +R F++KR++ EV+ D+LGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA K+QR  K K EAA
Sbjct:    1 MKLNISFPATGCQKLIEVDDERNVRTFYEKRMATEVAADSLGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAA 207          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_ONCMY (40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.304e-61
Identity = 125/211 (59.24%), Postives = 152/211 (72.04%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ D LG+E+KGY+ +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CI   +LSVLNLVI+KKGE D+PGLTD+  PR  GPKRASKIRKLFNL+KEDDVR+YV   RR  T +  K  +KAP+IQRLVTP  LQ KR RIA K+QR  K K EA+
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADPLGDEWKGYMVRISGGNDKQGFPMKQGVLTHGRVRLLLAKGHSCY--RPRRTGERKRKSVRGCIGDANLSVLNLVIIKKGEKDIPGLTDSTVPRRLGPKRASKIRKLFNLAKEDDVRQYV--VRRPLTKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAS 207          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_XENLA (40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.928e-61
Identity = 125/211 (59.24%), Postives = 151/211 (71.56%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NI+ P TGCQK +E++D++KLR F++KR++ EV+ D LG+E+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIV+KGE D+PGLTD   PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA K+QR  K K EA+
Sbjct:    1 MKLNISFPATGCQKLIEVEDERKLRTFYEKRMATEVAADPLGDEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVRKGEKDIPGLTDNTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLAKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAS 207          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_BRAFL (40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.801e-59
Identity = 122/212 (57.55%), Postives = 150/212 (70.75%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NI+ P TGCQK +E+DD++KLR F++KR+S +++ ++LG+E+KGY+ +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVI+KKGE D+PGLTDT  PR  GPKRA +IRKLFNL+KEDDVR+YV   RR    K GKK   K PKIQRL+TP  LQRKR   A K +R AK + E A
Sbjct:    1 MKINISYPATGCQKLIEVDDERKLRPFYEKRMSHQMTAESLGDEWKGYLVRISGGNDKQGFPMKQGVLTNGRVRLLLGKGHSCY--RPRRTGERKRKSVRGCIVDSNLSVLNLVILKKGEQDIPGLTDTTIPRRLGPKRAGRIRKLFNLNKEDDVRQYV--VRRPLPQKEGKKQKFKTPKIQRLITPQRLQRKRHMRAVKRRRYAKQREEEA 208          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 6.484e-59
Identity = 123/166 (74.10%), Postives = 132/166 (79.52%), Query Frame = 2
Query:  209 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLL+RGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+   +   L+   KEDDVRKYVNT    FTTK   K SKAPKIQRLVTPLTLQRKRARIA+K++RIAKAK+EAA
Sbjct:    1 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNT-TAEFTTKW--KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAA 161          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_GLOMM (40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.468e-59
Identity = 123/212 (58.02%), Postives = 147/212 (69.34%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK N++ P TGCQK  E++D+ KLR F++K + Q V  D LG+E+KGY+ +I GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  ++SVL LVIVKKGE D+PGLTDT  PR  GPKRASKIRKL+NLSK DDVR YV   RR    K  KK +SKAPKIQRL+TP+ LQRKR RIA K++R A +K  AA
Sbjct:    1 MKLNVSYPATGCQKLFEVNDEHKLRVFYEKHMGQVVEADILGDEWKGYMLRISGGNDKQGFPMKQGVLTHDRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDANMSVLALVIVKKGEKDIPGLTDTSVPRRLGPKRASKIRKLYNLSKVDDVRPYV--IRRPLPAKDNKKAISKAPKIQRLITPVVLQRKRRRIALKKKRQAASKEAAA 208          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_SPOFR (40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.597e-57
Identity = 120/211 (56.87%), Postives = 147/211 (69.67%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS----KAPKIQRLVTPLTLQRKRARIAEKEQRIAKAK 694
            MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV +I GG DKQGFPMKQGVLT  RVRLL+ +G  C+                 CIV  +LSVL LVIV+KGE ++PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +R    K GK+ +    KAPKIQRLVTP+ LQR+R R+A K++R+AK K
Sbjct:    1 MKLNVSFPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRIAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCY--RPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRK 207          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_DROME (40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.597e-57
Identity = 121/212 (57.08%), Postives = 148/212 (69.81%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLQRKRARIA-EKEQRIAKAKAEA 703
            MK N++ P TGCQK  E+ D+ KLR F++KR+ Q V  D LG+E+KGY  +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  ++SVL LV++KKGE D+PGLTDT  PR  GPKRASKIRKL+NLSKEDDVR++V   RR    K  KK  SKAPKIQRL+TP+ LQRK  RIA +K+++IA  +A A
Sbjct:    1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFV--VRRPLPAKDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASA 208          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_AEDAE (40S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.597e-57
Identity = 120/212 (56.60%), Postives = 150/212 (70.75%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTLQRKRARIAEKEQRI-AKAKAEA 703
            MK N++ P TG QK  E+ DD KLR F+DKR+  E++ D LG+E+KGYVFKI GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  +LS L L++VKKGE D+PGLTDT  PR  GPKRAS IRKL+NL+KEDDVR++V   +R    K GKK  +KAPKIQRL+TP+ LQRKR R+A K++R+ ++ +AEA
Sbjct:    1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVPRRLGPKRASNIRKLYNLTKEDDVRQFV--VKRPLPEKDGKKARTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEA 208          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6B_SCHPO (40S ribosomal protein S6-B OS=Schizosaccharomyces pombe GN=rps6b PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.597e-57
Identity = 123/212 (58.02%), Postives = 143/212 (67.45%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NI+ P  G QK +EIDDD++LR F +KR+ QEV GD++G EF GYVFKI GG DKQGFPM QGVL P RVRLLL  G PC+                 CIV  DL+VL L IVK+GE D+PGLTD   P+  GPKRASKIR+ FNLSKEDDVR++V   R     K GKK  +KAPKIQRLVTP TLQ KR R A K ++  K + EAA
Sbjct:    1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCY--RPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAA 209          
The following BLAST results are available for this feature:
BLAST of FC929905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_CHICK2.813e-6260.6640S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]
RS6_ONCMY5.304e-6159.2440S ribosomal protein S6 OS=Oncorhynchus mykiss GN... [more]
RS6_XENLA6.928e-6159.2440S ribosomal protein S6 OS=Xenopus laevis GN=rps6... [more]
RS6_BRAFL3.801e-5957.5540S ribosomal protein S6 OS=Branchiostoma floridae... [more]
RS6_TOBAC6.484e-5974.1040S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS6_GLOMM8.468e-5958.0240S ribosomal protein S6 OS=Glossina morsitans mor... [more]
RS6_SPOFR1.597e-5756.8740S ribosomal protein S6 OS=Spodoptera frugiperda ... [more]
RS6_DROME1.597e-5757.0840S ribosomal protein S6 OS=Drosophila melanogaste... [more]
RS6_AEDAE1.597e-5756.6040S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 ... [more]
RS6B_SCHPO1.597e-5758.0240S ribosomal protein S6-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC34001F12EF PostHarvC1 Citrus clementina cDNA clone C34001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929905 ID=FC929905; Name=FC929905; organism=Citrus clementina; type=EST; length=707bp
AAGGAGCATTTGTGCAGCAGCAGCGAGAGAGCCGAAGAACTCCACTGGGT
TAGTCTGATAGCCGCAGAGCAAAATGAAGTTCAATATTGCAAATCCCACC
ACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAAACTCCGAGC
ATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTCTTGGGG
AGGAGTTCAAAGGTTACGTCTTTAAGATAATGGGAGGCTGTGACAAGCAA
GGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGTTCGTCTTCT
GCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGAGAGATGGAG
AGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCAGATCTCTCA
GTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCTTCCTGGACT
TACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAGCCTCAAAGA
TCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGGAAGTATGTC
AACACATACCGTCGGACCTTTACAACCAAAACTGGTAAAAAGGTTAGCAA
GGCTCCTAAAATTCAGAGGTTGGTGACTCCTTTGACTTTGCAGAGGAAGC
GCGCCAGAATTGCTGAGAAAGAGCAGAGAATTGCCAAGGCCAAAGCAGAG
GCTGCCG
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