FC929905

Overview
NameFC929905
Unique NameFC929905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14130 contig Ccv1_Contig14130:7..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6A_SCHPO (40S ribosomal protein S6-A OS=Schizosaccharomyces pombe GN=rps6a PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.086e-57
Identity = 122/212 (57.55%), Postives = 143/212 (67.45%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NI+ P  G QK +EIDDD++LR F +KR+ QEV GD++G EF GYVFKI GG DKQGFPM QGVL P RVRLLL  G PC+                 CIV  DL+VL L I+K+GE D+PGLTD   P+  GPKRASKIR+ FNLSKEDDVR++V   R     K GKK  +KAPKIQRLVTP TLQ KR R A K ++  K + EAA
Sbjct:    1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCY--RPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAA 209          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_MANSE (40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.647e-57
Identity = 119/215 (55.35%), Postives = 148/215 (68.84%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS----KAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+                 CIV  +LSVL LVIV+KGE ++PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +     K GK+ +    KAPKIQRLVTP+ LQR+R R+A K++R+AK K+  A
Sbjct:    1 MKLNVSFPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCY--RPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKALLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSAEA 211          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_AEDAL (40S ribosomal protein S6 OS=Aedes albopictus GN=RpS6 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.352e-56
Identity = 120/212 (56.60%), Postives = 149/212 (70.28%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTLQRKRARIAEKEQRI-AKAKAEA 703
            MK N++ P TG QK  E+ DD KLR F+DKR+  E++ D LG+E+KGYVFKI GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  +LS L L++VKKGE D+PGLTDT   R  GPKRAS IRKL+NL+KEDDVR+YV   +R    K GKK  +KAPKIQRL+TP+ LQRKR R+A K++R+ ++ +AEA
Sbjct:    1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYV--VKRPLPEKDGKKPRTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEA 208          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_YEAST (40S ribosomal protein S6 OS=Saccharomyces cerevisiae GN=RPS6A PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.330e-55
Identity = 122/211 (57.82%), Postives = 142/211 (67.30%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NI+ P  G QK  EIDD+ ++R FFDKRI QEV G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P R++LLL +   C+                  IV PDL+VL LVIVKKGE +L GLTDT  P+  GPKRA+ IRK F LSKEDDVR +V    R   TK  K  +KAPKIQRLVTP  LQRKR + A K  R A+A+ EAA
Sbjct:    1 MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKNVSCY--RPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALK-VRNAQAQREAA 205          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_CAEEL (40S ribosomal protein S6 OS=Caenorhabditis elegans GN=rps-6 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.682e-54
Identity = 112/211 (53.08%), Postives = 145/211 (68.72%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            M+ N A P TG QK  E+D+++KLR FF+KR+SQEV+ DALG+E+KGYV +I GG DKQGFPMKQG+LT GRVRLLL +G  C+                 CIV  ++S L+LVIVKKG+ ++ GLTD+  PR  GPKRASKIRKLFNL+K DDV KYV T+ +TF     K +  APKIQRL+TP  + RK+  + +K  +  K + +AA
Sbjct:    1 MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCY--RERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTI--APKIQRLITPARIARKKYLLRQKRNQKIKMRDDAA 207          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_YARLI (40S ribosomal protein S6 OS=Yarrowia lipolytica GN=RPS6 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.202e-54
Identity = 115/211 (54.50%), Postives = 145/211 (68.72%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NIA P  G QK ++I+D+ ++R F++KR+ QEV  D LG+EFKGYV KI GG DKQGFPMKQGV+ P RVRLLL + + C+                 CIVS DLSVL++VIVK+G+ D+ GLT    PR  GPKRA+ IRKLF LSKEDDVR+YV   RR  TTK+GK  +KAPKIQRL+TP  L  K A++ EK+ +  +A  +AA
Sbjct:    1 MKLNIAYPAQGTQKCIDIEDEHRVRGFYEKRMGQEVEADFLGDEFKGYVLKITGGNDKQGFPMKQGVMHPTRVRLLLSKDSSCY--RSRRAGERKRKSVRGCIVSSDLSVLSVVIVKQGDADIEGLTTETVPRRLGPKRANNIRKLFALSKEDDVRQYV--IRREVTTKSGKTYTKAPKIQRLITPRRLAHK-AQLREKKVKAIQASKDAA 206          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_KLUMA (40S ribosomal protein S6 OS=Kluyveromyces marxianus GN=RPS6 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.827e-53
Identity = 117/211 (55.45%), Postives = 144/211 (68.25%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NI+ P  G QK +EIDD+ ++R F+DKRI QEV G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT C+                  IV PDL+VL LVIVKKG+ ++ G+T+   P+  GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP  LQRKR + A K +  A+A+ EAA
Sbjct:    1 MKLNISYPINGTQKCVEIDDEHRVRVFYDKRIGQEVDGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCY--RPRRNGERKRKSVRGAIVGPDLAVLALVIVKKGDQEIEGVTNETVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRQQKALKIKN-AQAQREAA 205          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_DEBHA (40S ribosomal protein S6 OS=Debaryomyces hansenii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.827e-53
Identity = 111/211 (52.61%), Postives = 143/211 (67.77%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NI+ P  G QK ++I+D+ KLR F++KR+ QEV GD +G+EFKGY+F+I GG DKQGFPMKQGV+ P RV+LLL +G  C+                 CIV+ DL+VL L +VK+G+ D+ GLTDT  P+  GPKRA+ IRK F L+KEDDVR++V    R    K  KK +KAPKIQRLVTP TLQRKRA  A+K +   + +  AA
Sbjct:    1 MKLNISYPANGTQKCIDIEDEHKLRVFYEKRMGQEVEGDTVGDEFKGYIFRITGGNDKQGFPMKQGVMHPTRVKLLLAKGHSCY--RPRRTGERKRKSVRGCIVAQDLAVLALSVVKQGDSDIEGLTDTTTPKRLGPKRANNIRKFFGLTKEDDVRQFV---VRREVVKGDKKYTKAPKIQRLVTPQTLQRKRALKAQKVKNAQQQRDAAA 206          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_CANGA (40S ribosomal protein S6 OS=Candida glabrata GN=RPS6A PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.827e-53
Identity = 116/211 (54.98%), Postives = 142/211 (67.30%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NIA P  G QK +E+DD+ ++R F+DKRI QE+ G+A+G+EFKGY FKI GG DKQGFPMKQGVL P RV+LLL +G  C+                  IV PDL+VL+LVIVKKGE +L G+TD   P+  GPKRA+ IRK F L+KEDDVR +V    R   TK  K  +KAPKIQRLVTP  LQRKR +    + R A+A+ EAA
Sbjct:    1 MKLNIAYPVNGTQKTVEVDDEHRVRVFYDKRIGQEIEGEAVGDEFKGYTFKITGGNDKQGFPMKQGVLLPTRVKLLLAKGHSCY--RPRRSGERKRKSVRGAIVGPDLAVLSLVIVKKGEQELEGVTDATVPKRLGPKRANHIRKFFGLTKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRYQ-RNLKVRNAQAQREAA 205          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_KLULA (40S ribosomal protein S6 OS=Kluyveromyces lactis GN=RPS6 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.020e-52
Identity = 114/211 (54.03%), Postives = 142/211 (67.30%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NI+ P  G QK +EIDD+ ++R F+DKRI QEV G+++G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LLL +G  C+                  IV PDL+VL L+I KKGE ++ G+T+   P+  GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP  LQRKR + + K +  A+A+ EAA
Sbjct:    1 MKLNISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLLAKGHSCY--RPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIEGITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGDKSYTKAPKIQRLVTPQRLQRKRQQKSLKIKN-AQAQREAA 205          
The following BLAST results are available for this feature:
BLAST of FC929905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6A_SCHPO2.086e-5757.5540S ribosomal protein S6-A OS=Schizosaccharomyces ... [more]
RS6_MANSE4.647e-5755.3540S ribosomal protein S6 OS=Manduca sexta GN=RpS6 ... [more]
RS6_AEDAL1.352e-5656.6040S ribosomal protein S6 OS=Aedes albopictus GN=Rp... [more]
RS6_YEAST3.330e-5557.8240S ribosomal protein S6 OS=Saccharomyces cerevisi... [more]
RS6_CAEEL3.682e-5453.0840S ribosomal protein S6 OS=Caenorhabditis elegans... [more]
RS6_YARLI8.202e-5454.5040S ribosomal protein S6 OS=Yarrowia lipolytica GN... [more]
RS6_KLUMA1.827e-5355.4540S ribosomal protein S6 OS=Kluyveromyces marxianu... [more]
RS6_DEBHA1.827e-5352.6140S ribosomal protein S6 OS=Debaryomyces hansenii ... [more]
RS6_CANGA1.827e-5354.9840S ribosomal protein S6 OS=Candida glabrata GN=RP... [more]
RS6_KLULA2.020e-5254.0340S ribosomal protein S6 OS=Kluyveromyces lactis G... [more]

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Properties
Property NameValue
Genbank descriptionC34001F12EF PostHarvC1 Citrus clementina cDNA clone C34001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929905 ID=FC929905; Name=FC929905; organism=Citrus clementina; type=EST; length=707bp
AAGGAGCATTTGTGCAGCAGCAGCGAGAGAGCCGAAGAACTCCACTGGGT
TAGTCTGATAGCCGCAGAGCAAAATGAAGTTCAATATTGCAAATCCCACC
ACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAAACTCCGAGC
ATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTCTTGGGG
AGGAGTTCAAAGGTTACGTCTTTAAGATAATGGGAGGCTGTGACAAGCAA
GGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGTTCGTCTTCT
GCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGAGAGATGGAG
AGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCAGATCTCTCA
GTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCTTCCTGGACT
TACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAGCCTCAAAGA
TCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGGAAGTATGTC
AACACATACCGTCGGACCTTTACAACCAAAACTGGTAAAAAGGTTAGCAA
GGCTCCTAAAATTCAGAGGTTGGTGACTCCTTTGACTTTGCAGAGGAAGC
GCGCCAGAATTGCTGAGAAAGAGCAGAGAATTGCCAAGGCCAAAGCAGAG
GCTGCCG
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