FC929905

Overview
NameFC929905
Unique NameFC929905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14130 contig Ccv1_Contig14130:7..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.020e-52
Identity = 112/211 (53.08%), Postives = 143/211 (67.77%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NI+ P  G QK +E+DD+ ++R F+DKRI QEV+G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT C+                  IV PDL+VL L+I KKG+ ++ G+T+   P+  GPKRA+ IRK F L+K+DDVR +V    R    K  K  +KAPKIQRLVTP  LQRKR + A K  R A+A+ EAA
Sbjct:    1 MKLNISYPVNGTQKTIEVDDEHRVRVFYDKRIGQEVNGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCY--RPRRNGERKRKSVRGAIVGPDLAVLALIITKKGDQEIEGITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFV---IRREVVKGDKTYTKAPKIQRLVTPQRLQRKRHQRALK-VRNAQAQREAA 205          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.109e-50
Identity = 112/211 (53.08%), Postives = 134/211 (63.51%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKEQRIAKAKAEAA 706
            MK NIA P  G QKK+ I+D  K+R F +KRI QEV    LG+EFKGYVFKI GG D +GFPM QGV  P RVRLLL   + CF                 CIV+ D++ L L+IVKKG+ ++PGLTD   P  +GPKRAS IRKLF LSK++DVR +V   R    T   K  SKAPKIQRLVTP T+ R++A  A+K  R  KA  EAA
Sbjct:    1 MKLNIAYPVNGSQKKINIEDKNKVRCFMEKRIGQEVEATTLGDEFKGYVFKITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCF--KPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKAKSKAPKIQRLVTPTTVARRKALRAKKAARHTKASNEAA 208          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.963e-41
Identity = 101/214 (47.20%), Postives = 127/214 (59.35%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLQRKRARIAEK-EQRIAKAKAEAA 706
            MK NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP    R +AR A+K +  IAK +A AA
Sbjct:    1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP----RVKARRAKKAKDAIAKVRASAA 207          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.162e-40
Identity = 100/214 (46.73%), Postives = 126/214 (58.88%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLQRKRARIAEK-EQRIAKAKAEAA 706
            M  NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP    R +AR A+K +  IAK +A AA
Sbjct:    1 MYLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP----RVKARRAKKAKDAIAKVRASAA 207          
BLAST of FC929905 vs. ExPASy Swiss-Prot
Match: RS6_ENCCU (40S ribosomal protein S6 OS=Encephalitozoon cuniculi GN=RPS6 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 64/197 (32.49%), Postives = 97/197 (49.24%), Query Frame = 2
Query:  122 EIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKI-----------QRLVTPLTLQRKRARIAEKEQR 679
            EI+   ++R  +DK+I  +  G  LGEEF+G + +I GG D QGFPM  G LT  RVR LL +G   +                  IVS ++ VLNL+I++ GE ++ GLT+        P++  K+RK+F +  E+   K V  Y R           K PKI           +R    + ++ +R RI E+E++
Sbjct:    3 EIERRNEVR-LYDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGY--RCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEE---KNVVGYIRNILKSECDDPKKIPKIRHNGKRMKREQERREQIMKIRLERKRILEEERK 193          
The following BLAST results are available for this feature:
BLAST of FC929905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_ASHGO2.020e-5253.0840S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]
RS6_DICDI1.109e-5053.0840S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_LEIMA7.963e-4147.2040S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN5.162e-4046.7340S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6_ENCCU1.237e-1732.4940S ribosomal protein S6 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionC34001F12EF PostHarvC1 Citrus clementina cDNA clone C34001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929905 ID=FC929905; Name=FC929905; organism=Citrus clementina; type=EST; length=707bp
AAGGAGCATTTGTGCAGCAGCAGCGAGAGAGCCGAAGAACTCCACTGGGT
TAGTCTGATAGCCGCAGAGCAAAATGAAGTTCAATATTGCAAATCCCACC
ACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAAACTCCGAGC
ATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTCTTGGGG
AGGAGTTCAAAGGTTACGTCTTTAAGATAATGGGAGGCTGTGACAAGCAA
GGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGTTCGTCTTCT
GCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGAGAGATGGAG
AGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCAGATCTCTCA
GTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCTTCCTGGACT
TACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAGCCTCAAAGA
TCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGGAAGTATGTC
AACACATACCGTCGGACCTTTACAACCAAAACTGGTAAAAAGGTTAGCAA
GGCTCCTAAAATTCAGAGGTTGGTGACTCCTTTGACTTTGCAGAGGAAGC
GCGCCAGAATTGCTGAGAAAGAGCAGAGAATTGCCAAGGCCAAAGCAGAG
GCTGCCG
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