FC929909

Overview
NameFC929909
Unique NameFC929909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:119..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929909 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.888e-28
Identity = 76/243 (31.28%), Postives = 111/243 (45.68%), Query Frame = 1
Query:    4 CNQVVCRECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP---NYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFF 717
            C    CR      G+ G G  +  +++   F  + + +    C  + FYT  AF+ A K +P F + G++   KREIAAFFA   HET               +C+  E+   S+ YCDP    +PC    KYYGRGP+Q+SWNYNY               +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG      +  R+G++
Sbjct:   48 CQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEIN-KSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYY 252          
BLAST of FC929909 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.888e-28
Identity = 82/243 (33.74%), Postives = 116/243 (47.74%), Query Frame = 1
Query:    4 CNQVVCRECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFF 717
            C    CR         G GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +C+  E+  AS DYCD N   YPC  GK Y+GRGPIQLSWNYNY  C             P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC    + AV  RI ++
Sbjct:   52 CRSGPCRSPGGTPSPPG-GGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYY 251          
BLAST of FC929909 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.345e-27
Identity = 73/228 (32.02%), Postives = 107/228 (46.93%), Query Frame = 1
Query:   49 AGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFF 717
            AG G  +  +++   F  + + +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q+SWN+NY               +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++
Sbjct:   78 AGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYY 268          
BLAST of FC929909 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 77/249 (30.92%), Postives = 111/249 (44.58%), Query Frame = 1
Query:    4 CNQVVCRECDPDDGTAGDGG------ELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFF 717
            C    CR      G  G GG       +  +++   F  + + +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +C+  E+   S+ YCD +   +PC    KYYGRGP+Q+SWNYNY               +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC       +  R+G++
Sbjct:   53 CQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGI-KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEIN-KSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYY 263          
BLAST of FC929909 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.785e-25
Identity = 70/205 (34.15%), Postives = 96/205 (46.83%), Query Frame = 1
Query:  121 DKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD----PNYPCRGK--YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFF 717
            D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC     Y+GRGPIQLSWN+NY                P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++
Sbjct:   85 DSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYY 253          
BLAST of FC929909 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  535 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 672
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of FC929909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_MAIZE7.888e-2831.28Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_BRANA7.888e-2833.74Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI4_ORYSJ1.345e-2732.02Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE4.328e-2630.92Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU4.785e-2534.15Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY1.765e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34001G04EF PostHarvC1 Citrus clementina cDNA clone C34001G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929909 ID=FC929909; Name=FC929909; organism=Citrus clementina; type=EST; length=717bp
AACTGTAATCAGGTTGTTTGCCGTGAATGTGATCCCGACGACGGGACGGC
TGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGAAGATGTTTGAAG
ACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCAGATGCTTCTAC
ACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAA
TTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCC
AAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGCGAA
TATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCGCTGCGTCGTCCGA
CTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTC
CAATTCAACTCTCTTGGAATTACAATTACTTACGGTGCGGAGAAGGCCTA
GGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCC
AGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCAC
CAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCA
AATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATAT
AATCAACGGTGGAATTGAATGTGGCTACGTTGGGAATGACGCTGTACGTA
ACCGTATTGGGTTCTTT
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