FC929912

Overview
NameFC929912
Unique NameFC929912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15282 contig Ccv1_Contig15282:456..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929912 vs. ExPASy Swiss-Prot
Match: PAG2_BOVIN (Pregnancy-associated glycoprotein 2 OS=Bos taurus GN=PAG2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.857e-26
Identity = 62/177 (35.03%), Postives = 101/177 (57.06%), Query Frame = 1
Query:    1 RKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 531
            + S+++ E+G    I YGSG I GF                 F  +  E     L   FDGI+GL F  + + D +P++DN+   G  SE VF+F+LN   +  EG  ++FGGVD +++KG+  ++PV++  +WQ ++ +I + N +   C  GC A++D+GTS++ GPT +VT I+
Sbjct:  113 QNSSSFREVGSPITIFYGSGIIQGFLGSDTVRIGNLVSPEQSFGLSLEEYGFDSL--PFDGILGLAFPAMGIEDTIPIFDNLWSHGAFSEPVFAFYLN--TNKPEGSVVMFGGVDHRYYKGELNWIPVSQTSHWQISMNNISM-NGTVTACSCGCEALLDTGTSMIYGPTKLVTNIH 284          
BLAST of FC929912 vs. ExPASy Swiss-Prot
Match: PEPC_CAVPO (Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.204e-25
Identity = 61/183 (33.33%), Postives = 97/183 (53.01%), Query Frame = 1
Query:    1 RKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 549
            R S+TY    +S  + YG+GS++G F                F  +  E    F+ A FDGI+GLG+  ++ G A      ++ +G +S+ +FS +L     ++EG +++ GGVD   + G   + PVT++ YWQ  +   LI   ++G C  GC  IVD+GTSLL  P+  ++ +  AIG E
Sbjct:  124 RDSSTYVATDQSFSLEYGTGSLTGVFGYDTMTIQDIQVPKQEFGLSETEPGSDFVYAEFDGILGLGYPGLSEGGATTAMQGLLREGALSQSLFSVYLGSQQGSDEG-QLILGGVDESLYTGDIYWTPVTQELYWQIGIEGFLIDGSASGWCSRGCQGIVDTGTSLLTVPSDYLSTLVQAIGAE 305          
BLAST of FC929912 vs. ExPASy Swiss-Prot
Match: PEPAF_RABIT (Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.204e-25
Identity = 69/208 (33.17%), Postives = 109/208 (52.40%), Query Frame = 1
Query:    7 SNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI------NHAIGGEGVVSAECKLVVSQYGDLIWDL 612
            S+T+   G+   I YGSG +SGF +               F  + +E       A FDGI+GL +  ++     PV+DN+  QGL+S+ +F+F+L+     E G  ++ GGVDP ++ G   +VPV++  YWQ  +  I +  ++ G C+ GC  IVD+GTSLL GP   V  I       H+ GGE ++  +    +S   D+I+ +
Sbjct:  121 SSTFLVSGRPINIVYGSGRMSGFLAYDTVQIAGLVDVAQAFGLSLQEPGKFMEYAVFDGILGLSYPSLSFEGITPVFDNLWAQGLISQNLFAFYLS--SKEERGSMLMLGGVDPSYYSGDLHWVPVSRPLYWQLAVDRISMNGEAIG-CDSGCQGIVDTGTSLLIGPRDPVLNIQKIINAQHSHGGEYIIDCD---TISTLPDIIFTI 322          
BLAST of FC929912 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 70/205 (34.15%), Postives = 100/205 (48.78%), Query Frame = 1
Query:    1 RKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIE----ATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNM-VEQGLVSEEVFSFWLNRDP-DAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG----EGVVSAECKLVVS 585
            +KS++ T  G S EI YG+GS+ G                    +    AT E  +TF+ A+FDGI G+G+  I+V       D +     +   ++F+FWL+RD  D   GGEI     DP H+ G   + P+  + YW+  L  ++I    T    G   +IVD+GTSLL GPT V+ +I H IGG     G    EC  + S
Sbjct:  116 KKSSSCTATGASFEIQYGTGSMKGTVDNDVVCFGHDTTYCTDKNQGLACATSEPGITFVAAKFDGIFGMGWDTISVNKISQPMDQIFANSAICKNQLFAFWLSRDANDITNGGEITLCETDPNHYVGNIAWEPLVSEDYWRIKLASVVI--DGTTYTSGPIDSIVDTGTSLLTGPTDVIKKIQHKIGGIPLFNGEYEVECSKIPS 318          
BLAST of FC929912 vs. ExPASy Swiss-Prot
Match: PEPA_CHICK (Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 65/190 (34.21%), Postives = 99/190 (52.11%), Query Frame = 1
Query:    4 KSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG--GEGVVSAE 567
            KS+TY    ++  I YG+GS+SG                  F  +  E    F    FDGI+GL F  I+   A PV+DNM+ Q LV++++FS +L++  D E G  ++FGG+DP +      +VP++ + YWQ  +  + +GN+    C   C AIVD+GTSLL  P      I   +G   +G +S +
Sbjct:  105 KSSTYVSTNETVYIAYGTGSMSGILGYDTVAVSSIDVQNQIFGLSETEPGSFFYYCNFDGILGLAFPSISSSGATPVFDNMMSQHLVAQDLFSVYLSK--DGETGSFVLFGGIDPNYTTKGIYWVPLSAETYWQITMDRVTVGNKYV-ACFFTCQAIVDTGTSLLVMPQGAYNRIIKDLGVSSDGEISCD 291          
BLAST of FC929912 vs. ExPASy Swiss-Prot
Match: PAG1_SHEEP (Pregnancy-associated glycoprotein 1 OS=Ovis aries GN=PAG1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 62/180 (34.44%), Postives = 98/180 (54.44%), Query Frame = 1
Query:    4 KSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 543
            +S+T+     +  I +GSG++ GF +               F     E   ++L   FDGI+GL + +I+   A+P++D +  +G  SE VF+F+LN+  D +EG  ++FGGVD +++KG+  +VP+   G W   L D +   +    C GGC A+V +GTSL+ GP  VV  I   IG
Sbjct:  120 QSSTFRFTNDTFRIYFGSGTMRGFVAHDTVRIGDLVSTDQPFGLIFLE---SWLDIPFDGILGLNYPKISFSGAIPIFDKLKNEGAFSEPVFAFYLNK--DKQEGSVVMFGGVDHRYYKGELNWVPLIHPGEWSIPL-DRISMRRKVIACSGGCEALVGTGTSLILGPRTVVENIQKHIG 293          
BLAST of FC929912 vs. ExPASy Swiss-Prot
Match: PAG1_BOVIN (Pregnancy-associated glycoprotein 1 OS=Bos taurus GN=PAG1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 56/180 (31.11%), Postives = 95/180 (52.78%), Query Frame = 1
Query:    4 KSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 543
            +S+T+    K+  I YGSG + G                  F  +  E      +  +DG++GL +  I+   A+P++D +  Q  +SE VF+F+L++  D  EG  ++FGGVD ++++G+  +VP+ + G W  ++  I I  +    C  GC A+VD+GTS + GP  +V  I+  IG
Sbjct:  117 QSSTFRLTNKTFRITYGSGRMKGVVVHDTVRIGNLVSTDQPFGLSIEEYGFEGRI--YDGVLGLNYPNISFSGAIPIFDKLKNQRAISEPVFAFYLSK--DEREGSVVMFGGVDHRYYEGELNWVPLIQAGDWSVHMDRISI-ERKIIACSDGCKALVDTGTSDIVGPRRLVNNIHRLIG 291          
BLAST of FC929912 vs. ExPASy Swiss-Prot
Match: PLM1_PLAFA (Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = 1
Query:    4 KSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 510
            KS TY + G   E+NY SG++SGFFS+              FIE T        + L +FDGI+GLG++++++G   PV   +  Q  + + VF+F+L  D   +  G +  GG++ + ++G+ TY  +    YWQ +L D+  GN +         AIVDSGTS +  PT
Sbjct:  185 KSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFPYK-FIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPFDD--KHKGYLTIGGIEDRFYEGQLTYEKLNHDLYWQVDL-DLHFGNLTV----EKATAIVDSGTSSITAPT 347          
BLAST of FC929912 vs. ExPASy Swiss-Prot
Match: PLM1_PLAF7 (Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0076 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = 1
Query:    4 KSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 510
            KS TY + G   E+NY SG++SGFFS+              FIE T        + L +FDGI+GLG++++++G   PV   +  Q  + + VF+F+L  D   +  G +  GG++ + ++G+ TY  +    YWQ +L D+  GN +         AIVDSGTS +  PT
Sbjct:  185 KSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFPYK-FIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPFDD--KHKGYLTIGGIEDRFYEGQLTYEKLNHDLYWQVDL-DLHFGNLTV----EKATAIVDSGTSSITAPT 347          
BLAST of FC929912 vs. ExPASy Swiss-Prot
Match: CARP1_RHINI (Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 63/197 (31.98%), Postives = 92/197 (46.70%), Query Frame = 1
Query:    1 RKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV-TKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG----GEGVVSAEC 570
            +KS+TY   G++  I+YG GS +                    IE  +  S  F     DG++GLGF  I    G   PV DN++ QGL+S  +F  +L +  +   GGE +FGG D   FKG  T VP+   +G+W   +    IG  +         AI+D+GT+LL  P  V  ++  + G    G+G  S  C
Sbjct:  126 KKSSTYAADGRTWSISYGDGSSASGILATDNVNLGGLLIKKQTIELAKRESSAFATDVIDGLLGLGFNTITTVRGVKTPV-DNLISQGLISRPIFGVYLGKQSNGG-GGEYIFGGYDSSKFKGSLTTVPIDNSEGFWGVTVKSTKIGGTTV---SASFDAILDTGTTLLLLPDDVAAKVARSYGASDNGDGTYSITC 317          
The following BLAST results are available for this feature:
BLAST of FC929912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PAG2_BOVIN1.857e-2635.03Pregnancy-associated glycoprotein 2 OS=Bos taurus ... [more]
PEPC_CAVPO1.204e-2533.33Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1[more]
PEPAF_RABIT1.204e-2533.17Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1[more]
ASP3_CAEEL7.803e-2534.15Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]
PEPA_CHICK3.873e-2434.21Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1[more]
PAG1_SHEEP4.282e-2334.44Pregnancy-associated glycoprotein 1 OS=Ovis aries ... [more]
PAG1_BOVIN8.928e-2131.11Pregnancy-associated glycoprotein 1 OS=Bos taurus ... [more]
PLM1_PLAFA2.199e-1934.50Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2[more]
PLM1_PLAF72.199e-1934.50Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7... [more]
CARP1_RHINI8.357e-1931.98Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC34001G07EF PostHarvC1 Citrus clementina cDNA clone C34001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929912 ID=FC929912; Name=FC929912; organism=Citrus clementina; type=EST; length=697bp
AGAAAATCCAATACATATACCGAAATTGGAAAATCCTGTGAAATAAACTA
TGGATCTGGATCAATTTCTGGCTTCTTCAGTCAAGACAATGTTGAAGTTG
GGGATGTTGTTGTCAAGGATCAGGTTTTCATTGAGGCTACACGAGAAGGG
AGTCTCACTTTTCTATTGGCAAGGTTTGATGGAATAATAGGGCTTGGGTT
CCGGGAAATTGCAGTTGGGGATGCTGTGCCTGTGTGGGACAATATGGTTG
AGCAGGGCCTTGTAAGCGAGGAGGTCTTCTCATTCTGGCTCAACAGGGAT
CCAGACGCTGAAGAGGGTGGAGAGATTGTTTTTGGCGGTGTTGATCCAAA
GCACTTTAAAGGGAAGCATACCTATGTTCCTGTTACTAAAAAAGGCTACT
GGCAGTTCAATTTGGGAGATATATTAATTGGGAATCAGTCCACAGGTGTT
TGTGAGGGTGGTTGTGCTGCCATTGTGGACTCAGGAACATCCTTACTAGC
CGGTCCAACACCTGTTGTGACTGAAATCAATCATGCCATTGGTGGTGAAG
GAGTTGTTAGTGCGGAGTGTAAGCTAGTTGTTTCCCAGTATGGGGATTTA
ATATGGGATCTCTTAGTATCAGGGCTACTACCTGAGAAAGTATGTCAGCA
GATTGGTTTATGTGCTTTCAATGGCGCTGAATATGTGAGTACTGGGA
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