FC929915

Overview
NameFC929915
Unique NameFC929915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_AERPE (Translation initiation factor 6 OS=Aeropyrum pernix GN=eif6 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 78/213 (36.62%), Postives = 118/213 (55.40%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIG-GSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            +L    +  +GV+   ++++ L     G++   +  E   V +  VV+  + G R++G L  GN  G+LLP    D+E++ +R +L + V V  +  R +ALGN I CND   LA   L++E  + ++D LGVEV   ++AG   VGS    +NRGGL HP  S E+L  LS + +VP  AGT+N G E +  GL  N + A  G DTT  E+
Sbjct:   11 KLSLYGNPNIGVYLTASDSYVLAPDDIGADDVRTISEVLGVAMERVVRLRVLGMRLVGVLTTGNSRGILLPEGV-DREVELVRKAL-EGVEVGIVPTRSNALGNVIVCNDRACLASPGLEKEALKTVSDTLGVEVVEGSVAGVYTVGSAIVVTNRGGLAHPDASEEELKFLSDVFKVPFEAGTINFGVEFVRTGLVANSYGALVGEDTTGPEI 221          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_PYRFU (Translation initiation factor 6 OS=Pyrococcus furiosus GN=eif6 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.043e-28
Identity = 79/215 (36.74%), Postives = 115/215 (53.49%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVV---VQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            +L FENS  +GVF   T+   L+  G  E         L   +PVV+ S+  +RIIG L  GN N +++P    D EL+ ++N+  +  +   V   + + +ALGN I  ND  AL  +   RE  + I D+LGVEV R  IAG + VGS    +N+GGLVHP  + E+L+ LS L +V +  GT N G   +G+ +  N +    G  TT  E+
Sbjct:    5 KLDFENSPYLGVFGIATDKVVLIREGLQEKKLEVIREVLK--VPVVEASLMKSRIIGVLGAGNSNAIIVPWYVWDSELEKIKNAFREYGIDTEVVPFQTKYTALGNLILTNDKGALVSSKFSREEAKKIGDILGVEVERGVIAGIVAVGSAGVVTNKGGLVHPEATDEELEWLSDLFKVDVYVGTANMGVPYVGSCMLANSYGVVVGHLTTGPEI 217          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_PYRHO (Translation initiation factor 6 OS=Pyrococcus horikoshii GN=eif6 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.668e-28
Identity = 78/215 (36.28%), Postives = 111/215 (51.63%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            RL FENS  +GVF   T+   L+  G  E         L   +PV++ S+  +RIIG L  GN N ++LP    D E++ ++ +L +  +   +     + +ALGN I  ND  AL      R+  + I ++LGVEV R  IAG   VGS    +N+GGLVHP TS E+L+ LS L +V +  GT N G   +G  +  N      G  TT  E+
Sbjct:    5 RLDFENSPYLGVFGVATDRVVLIREGLQEKKLEVIRETLK--VPVIEVSVMKSRIIGTLATGNSNAIILPWYVWDAEIERIKKALSEYGIDMEVVPFRSKYTALGNLILTNDKAALVSAKFSRKEAQEIGEILGVEVERGVIAGLHAVGSAGVVTNKGGLVHPETSDEELEWLSDLFKVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEI 217          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_PYRAB (Translation initiation factor 6 OS=Pyrococcus abyssi GN=eif6 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.014e-27
Identity = 80/215 (37.21%), Postives = 110/215 (51.16%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            RL FENS  +GVF   T+   LV  G  E         L   +PV++ SI  +RIIG L  GN N +L+P    D E++ ++++  +  +   I     + +ALGN I  ND  AL      R+  + I D+LGVEV R  IAG   VGS    +N+GGLVHP  S E+L+ LS L +V +  GT N G   +G  +  N      G  TT  E+
Sbjct:    5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEI 217          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_THEON (Translation initiation factor 6 OS=Thermococcus onnurineus (strain NA1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 77/215 (35.81%), Postives = 110/215 (51.16%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE---ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            +L FENS  +GV+   T+   L+  G  E         L   +P+++TSI  +RI+G    GN N +++P    D EL+H++N L +  +  RIE     L+A GN I  ND  AL      RE  + + D+LGVEV R  I     VGS    +NRGGLVHP  + E+L+ L  L +V +  GT N G   +G+ +  N      G  TT  E+
Sbjct:    5 KLDFENSPYLGVYGTATDRVALIREGLGEKKLEVLREVLK--VPLIETSIMKSRIVGVFAAGNSNAIVVPWYIWDAELEHIQNELNELDIDMRIEPFQSTLTAFGNLILANDKAALISVKFTREEAKKLEDILGVEVERGMIGDYHAVGSVGVVTNRGGLVHPEATDEELEWLRDLFKVDIYVGTANMGVPFVGSCMLANSHGVVVGHLTTGPEI 217          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_METST (Translation initiation factor 6 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=eif6 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.729e-27
Identity = 76/215 (35.35%), Postives = 116/215 (53.95%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            M  +   + +  +GV     +   +V+ G  +S+  + +  L   +P++KT I G+ + G L  GN NGLL+       EL  LR      + V+ + ++L+A+GN I  ND+ AL +  L  E + II + L VEV   +IAG  +VGS  + +NRG LVHP  S E+LD +  +L VP   GTVNRG +++GA +  N      G+ TT  EL
Sbjct:    1 MIQKFDIDGNPNLGVSILAKDNVAIVSPGLQDSYLKSIKETLN--VPIIKTPICGSNLAGALMAGNSNGLLISPYVFSHELDVLREH---DINVEIMPDKLTAIGNIIVANDNGALVNPSLSDEAKRIIKNTLEVEVVETSIAGLDIVGSLVAATNRGALVHPDASEEELDLVEDVLGVPAEIGTVNRGVKLVGACIIANSNGVIVGNKTTGPEL 210          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_THEGJ (Translation initiation factor 6 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.571e-27
Identity = 76/215 (35.35%), Postives = 110/215 (51.16%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            RL FENS  +GV+   T+   ++  G  E   +T    L   +P+++TS+  +RI+G    GN N L++P    D EL  +   L +  +   +   + RL+A GN I  ND  AL   D  RE    I D+LGV V R  IA    VGS    +N+GGLVHP  + E+L+ LS L +V +  GT N G   +G+ +  N +    G  TT  E+
Sbjct:    5 RLDFENSPYLGVYGFATDRVAVIREGLGEKKLATLREVLK--VPLIETSVMKSRIVGIFVAGNSNALIVPWYIWDAELDFINAQLREYGIDMEVVPFQSRLTAFGNLILANDKGALVSKDFTREEARKIEDILGVPVERGVIADYTAVGSVGVVTNKGGLVHPEATDEELEWLSDLFKVDVYVGTANMGVPFVGSCMIANSYGVVVGHLTTGPEI 217          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_METMA (Translation initiation factor 6 OS=Methanosarcina mazei GN=eif6 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 76/203 (37.44%), Postives = 113/203 (55.67%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            +GVF+  T    LV         +  E E +DV  VV+T I G+ ++G L  GN NG LLP+ ++ +E+Q  R  +P  +    + +RL+A+GN +  ND  AL H +L     EIIA  L VEV+R TIAG   VG     +N+G LVHP  ++ + + L  +  +P+  GT N G++++G+GL  N      GS+TT  EL
Sbjct:   13 IGVFATCTEDLALVPPLTKPEVCTILE-EALDV-RVVETLINGSTVVGALSRGNSNGFLLPYGSSVEEMQK-RTGVPAGI----LPDRLNAVGNIVLANDSAALVHPELSDRALEIIARTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTVSEREALEEIFGLPVNIGTTNFGTQMLGSGLLANSKNFVAGSETTGPEL 208          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_PYRKO (Translation initiation factor 6 OS=Pyrococcus kodakaraensis GN=eif6 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.464e-26
Identity = 77/216 (35.65%), Postives = 113/216 (52.31%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV-EVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            RL FENS  +GV+ + T+   L+  G  E         L   +P+++TSI  +RI+G    GN N +++P    D EL+ ++ +L +    + V   + RL+ALGN I  ND  AL   +  RE    I ++LGV EV R  IA    VGS    +N+GGLVHP  + E+L+ LS L  V +  GT N G   +G+ +  N +    G  TT  E+
Sbjct:    5 RLDFENSPYLGVYGRATDRVLLLREGLGEKKLEVLREVLK--VPIIETSIMKSRIVGIFAAGNSNAIIVPWYIWDAELERIKTALNEFGIDMDVVPFKSRLTALGNLILTNDKAALVSKEFTREEANAIGEILGVDEVERGMIASYRSVGSVGVVTNKGGLVHPEATDEELEWLSDLFGVDIYVGTANMGVPFVGSCMLANSYGVVVGHLTTGPEI 218          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_METKA (Translation initiation factor 6 OS=Methanopyrus kandleri GN=eif6 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.562e-26
Identity = 64/170 (37.65%), Postives = 96/170 (56.47%), Query Frame = 1
Query:  202 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            + VV+T++ G+ ++G L   N NG L P    + E++ +R      V V  +  +++A+GN +  NDH AL H DLD    E+I  VLG  V R  + G   VGS    +++G +VHP  + E+++ +S +L V +  GTVNRGS  +G G+ VN   A  G DTT  EL
Sbjct:   45 VEVVRTTVAGSNLVGALLAVNSNGALFPRHAREHEIRVVREL---GVEVDVLPSKMNAVGNLVLTNDHGALVHPDLDDHALEVIESVLGGRVVRGELGGVKTVGSAGVANSKGAVVHPGATEEEMERVSEVLGVDVEVGTVNRGSPYVGVGIVVNSKGAVVGEDTTGPEL 211          
The following BLAST results are available for this feature:
BLAST of FC929915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_AERPE4.116e-2936.62Translation initiation factor 6 OS=Aeropyrum perni... [more]
IF6_PYRFU2.043e-2836.74Translation initiation factor 6 OS=Pyrococcus furi... [more]
IF6_PYRHO2.668e-2836.28Translation initiation factor 6 OS=Pyrococcus hori... [more]
IF6_PYRAB1.014e-2737.21Translation initiation factor 6 OS=Pyrococcus abys... [more]
IF6_THEON1.324e-2735.81Translation initiation factor 6 OS=Thermococcus on... [more]
IF6_METST1.729e-2735.35Translation initiation factor 6 OS=Methanosphaera ... [more]
IF6_THEGJ6.571e-2735.35Translation initiation factor 6 OS=Thermococcus ga... [more]
IF6_METMA8.581e-2737.44Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_PYRKO1.464e-2635.65Translation initiation factor 6 OS=Pyrococcus koda... [more]
IF6_METKA5.562e-2637.65Translation initiation factor 6 OS=Methanopyrus ka... [more]

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Properties
Property NameValue
Genbank descriptionC34001G10EF PostHarvC1 Citrus clementina cDNA clone C34001G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929915 ID=FC929915; Name=FC929915; organism=Citrus clementina; type=EST; length=711bp
GATCGCAGGTCTTGTGCTTTGCTTCGGTCCATCTTTTAATCGGTTCAATT
CTGTTAATTTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTG
AGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATT
GGAGGTTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGTAGATGT
TATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGC
TTTGTGTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGAC
CAAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCA
GCGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATG
ACCATGTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATT
ATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAATTGCCGGTAA
TATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCC
ACCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAA
GTACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGC
TGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGGTCAGACACCACGG
CAACCGAACTC
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