FC929915

Overview
NameFC929915
Unique NameFC929915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 63/203 (31.03%), Postives = 97/203 (47.78%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            +GV+    + F L+     E         L   +   + S+ G R++G    GN NGL++P    D EL+HL++ L   +VV   + R + +GN +  ND+  +A   L +   + IAD LGVE  + +I     VGS    +NRG  + P  + E++  +   L+V     TVNRG   +  GL  N   A  G DTT  E+
Sbjct:   15 IGVYIFANDRFALIPYDAPEKLDRKIAENLS--VDAFRVSVAGTRLVGIFLAGNNNGLVVPRVILDSELEHLKSLLDVNIVVLE-DVRETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGLVANSKGALVGEDTTGHEM 214          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_METHJ (Translation initiation factor 6 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=eif6 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 62/203 (30.54%), Postives = 105/203 (51.72%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            +GVF+++ +   +V     E   + +E  L   + +V+T+I  + IIG L VGN NGL++    T++E+     +L +   +  +EE ++A GN I  NDH A  H ++D E  + ++D L V V   T+     VG     +N G +V P T+  ++  L  +  +P+  GTV  G+ ++G GL  N +    G  T+  EL
Sbjct:   13 IGVFTRVFDDIAVVPPDVPEEVTTRYEEALK--VEIVRTTIQRSPIIGSLLVGNNNGLVITGMATEEEIA----TLSEYRDLMLLEEGMNAAGNIILANDHFAAVHPEMDEEFMDALSDFLKVPVIPLTLGDVKTVGMAAVATNSGVVVSPRTTPGEIQRLEQVCSLPVGKGTVTMGNAMVGTGLVANRYGYLAGVGTSGYEL 209          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 68/212 (32.08%), Postives = 102/212 (48.11%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            R  F  S  VGVF++  +   LV     E        EL    P++ T++GG   +G L  GN+NG+L+    T++E   +  +   +V    +   ++A GN +  ND+ A  H DL RE+   I + LGV V R  +     VG+    +N G L HP ++  +L  +   L V    GT+N G+ +IG+GL   D     G DTT  EL
Sbjct:    3 RATFTGSSYVGVFARAIDDLLLVRPDVDEELADALGEEL-GAEPLL-TTVGGANTVGSLATGNENGVLVSARATEREQSRIAEAADCEV--GELPGEINAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGLIATDEGYVVGEDTTGPEL 210          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_HALS3 (Translation initiation factor 6 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21
Identity = 63/212 (29.72%), Postives = 102/212 (48.11%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            R  F  S  +GVF++ T +  LV     + F  +   EL   +P V+T++GG+  +G L  GN +GLL+ +   ++E   +  +    V V  +   ++A GN +  ND  A  H+ L  +    + + L V   R  +AG   VG+    +  G L HP  +  +L+ +   L V    GTVN G+ ++G+GL   D     G DTT  E+
Sbjct:    3 RAAFRGSAYIGVFARATESCVLVRPDLDDDFVDSIADELG--VPAVQTTVGGSSTVGSLAAGNSSGLLVSNRIRERERDRIEAA---GVTVGELPGAVNAAGNVVVANDDGAYVHSGLSDDAVAAVEETLDVSATRGQLAGVDTVGTAAVATTDGVLCHPKATDAELERIEETLGVYADVGTVNYGAPLVGSGLVAADDGYLVGDDTTGPEI 209          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_STAMF (Translation initiation factor 6 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 69/215 (32.09%), Postives = 107/215 (49.77%), Query Frame = 1
Query:   76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            RL    +  +GV+    N+  LV    S        AE +DV  +V+T I    + G L VGN NG++LP    D+EL  L N+L      + V R +   +ALGN + CN+   +A ++L+R+    I++ LGVE   + I    + GS    +++GG++HP  S ++  EL  + +V     TVN G   I +GL  N+     G  TT  E+
Sbjct:    5 RLSLFGNPNIGVYVFANNSIALVPPSLSSGEKKVI-AETLDV-ELVETKIANTILNGVLVVGNDNGIILPRIILDEELDILNNNLKKHDLNIYVSRSKN--TALGNILLCNNKACIAGSELERQELNKISEALGVEALYKDIMNLTIPGSLAVVTDKGGVIHPDISDDENRELKEIFKVAFERATVNSGIPFIKSGLIANNKGIIVGEYTTGPEI 215          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_METMJ (Translation initiation factor 6 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 67/203 (33.00%), Postives = 101/203 (49.75%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            +GV++++     +V  G    F +    EL   + +V T I G+ IIG L  GN  GL++    TD+EL      L +   V  ++  ++A GN I  ND VA  H ++  +  E I   L V V R T+ G   VG     +N+G LVHP  +  ++  L  ++ +P+  G+VN GS ++G GL  N      GS TT  EL
Sbjct:   13 IGVYARVFEDIAIVYPGAPAEFTAALARELD--VEIVSTFIQGSSIIGSLVSGNSQGLVVSGLATDEELA----VLSEYRDVFLLKGPMNAAGNIILANDCVAAVHPEMQIDVAEEIGSFLEVPVVRLTLGGIKTVGMAGFATNKGILVHPRANDTEIANLERIVDLPIGLGSVNMGSGLVGTGLLANSKGYVAGSVTTGFEL 209          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_PYRAE (Translation initiation factor 6 OS=Pyrobaculum aerophilum GN=eif6 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 62/168 (36.90%), Postives = 94/168 (55.95%), Query Frame = 1
Query:  208 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            V + ++  + ++G   V N NG+LLP    ++E++ L  +L   V +  I  + +A+ N I   + VAL    L+    +++ADVLGVEV   TIAGN LVG+    ++RG LV P  + +DL +LS   +V +  GTVNRG   +  G+ VND  A  G +T   EL
Sbjct:   48 VARFTVARSPLLGIFTVVNDNGVLLPPLVLEEEVR-LFKALGLNVDI--INTKYTAISNLILAGNKVALVSPLLEPSARKVVADVLGVEVIVDTIAGNPLVGALAVLNSRGLLVAPEATDDDLKKLSEYFKVRVDVGTVNRGKSFLRGGIVVNDNGALVGDETAGPEL 212          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_CENSY (Translation initiation factor 6 OS=Cenarchaeum symbiosum GN=eif6 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 55/165 (33.33%), Postives = 91/165 (55.15%), Query Frame = 1
Query:  217 TSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            TS+   R++G L V N +G+++P T ++ E +  +      VVV  ++ + +ALGN I+ ND   +      RE   IIAD LG+EV ++ IAG   VG+    ++ GG++HP T  ED+  +S ++ V +   T+N G   + +GL  N  +   GS T+  E+
Sbjct:   50 TSVANTRLMGTLMVLNNSGIIMPSTISEIEYEFYKKHTDLNVVV--LDTKFTALGNMISVNDRGGVVSPVFPREEVRIIADALGIEVIQRRIAGYNQVGAMMVATSGGGIIHPETDGEDVKRISEVMGVHMEPATINGGIPFVSSGLLANKKSVVAGSFTSGPEI 212          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_THEVO (Translation initiation factor 6 OS=Thermoplasma volcanium GN=eif6 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 64/217 (29.49%), Postives = 108/217 (49.77%), Query Frame = 1
Query:   61 VIMATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            VI  T +M   S  +G+++K  +    +     E   + F   L   + + + SI G+ +IG +   N NG++LP+ +    L  +     D   V  ++++++A+GN I  NDH A+ H     +  + I D LGVE  R +I   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  +GA +  N      G DTT  E+
Sbjct:    3 VIRKTSVM--RSSFIGIYAKAWDDVAFITKMADEKTVNEFREVLQ--VDIKRISIDGSTLIGTMIAVNSNGIVLPYGSNIDGLDGI-----DGRNVLYLKDKINAVGNDIIANDHGAIIHKAFSNKARKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGTANFGSIYVGASIVANSKGILVGRDTTPIEI 210          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_PYRAR (Translation initiation factor 6 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=eif6 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 60/167 (35.93%), Postives = 91/167 (54.49%), Query Frame = 1
Query:  208 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE 708
            V + ++  + ++G   V N NG+LLP    ++E++ L  +L   V V  +  + +A+ N I   + VAL    L+    +++ADVLGVEV   TIAGN LVGS    ++RG LV P  + EDL +L+   +     GTVN+G   +  G+ VND  A  G +T   E
Sbjct:   48 VARLTVAKSPLLGIFTVVNDNGVLLPPMVLEEEIR-LFKALGLNVEV--LNTKYTAISNLILAGNKVALVSPLLEPSVRKVVADVLGVEVIVDTIAGNPLVGSLAVLNSRGVLVAPEATDEDLKKLAEYFKAKTDLGTVNKGKSFLRGGIVVNDHGALVGDETAGPE 211          
The following BLAST results are available for this feature:
BLAST of FC929915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_THEPD5.388e-2131.03Translation initiation factor 6 OS=Thermofilum pen... [more]
IF6_METHJ5.388e-2130.54Translation initiation factor 6 OS=Methanospirillu... [more]
IF6_HALLT5.388e-2132.08Translation initiation factor 6 OS=Halorubrum lacu... [more]
IF6_HALS37.036e-2129.72Translation initiation factor 6 OS=Halobacterium s... [more]
IF6_STAMF1.200e-2032.09Translation initiation factor 6 OS=Staphylothermus... [more]
IF6_METMJ1.200e-2033.00Translation initiation factor 6 OS=Methanoculleus ... [more]
IF6_PYRAE1.568e-2036.90Translation initiation factor 6 OS=Pyrobaculum aer... [more]
IF6_CENSY1.568e-2033.33Translation initiation factor 6 OS=Cenarchaeum sym... [more]
IF6_THEVO2.047e-2029.49Translation initiation factor 6 OS=Thermoplasma vo... [more]
IF6_PYRAR5.957e-2035.93Translation initiation factor 6 OS=Pyrobaculum ars... [more]

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Properties
Property NameValue
Genbank descriptionC34001G10EF PostHarvC1 Citrus clementina cDNA clone C34001G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929915 ID=FC929915; Name=FC929915; organism=Citrus clementina; type=EST; length=711bp
GATCGCAGGTCTTGTGCTTTGCTTCGGTCCATCTTTTAATCGGTTCAATT
CTGTTAATTTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTG
AGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATT
GGAGGTTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGTAGATGT
TATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGC
TTTGTGTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGAC
CAAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCA
GCGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATG
ACCATGTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATT
ATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAATTGCCGGTAA
TATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCC
ACCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAA
GTACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGC
TGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGGTCAGACACCACGG
CAACCGAACTC
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