FC929915

Overview
NameFC929915
Unique NameFC929915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 67/215 (31.16%), Postives = 104/215 (48.37%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            M  ++   NS  +GV+++  N    + +  S+     FE  L     V K SIG + +IG +   N NG+++     D  + +L++   +   +  I  +L+A GN I  NDH AL H        + I DVLGVE  + +IAG   VGS    ++RG LV      +++  LS L ++ +  GT N GS  +GA +  N      G  TT+ EL
Sbjct:    1 MIKKVSILNSNFIGVYARTWNDVTFLPVNISDEEKRIFEETLKT--EVYKISIGNSFLIGSMLSMNSNGIVV----ADHGIDNLKSLNINGRNILSINNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGSVAVLNDRGMLVTSEADEDEIKYLSDLFKINVKTGTANFGSNYVGASIIANSNGILVGEATTSIEL 209          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_META3 (Translation initiation factor 6 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eif6 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19
Identity = 66/207 (31.88%), Postives = 109/207 (52.66%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            +GV S  T  F L      E+  + F+ +++DV PV   +IG + +IG LC  N  G++LP  T ++E   L + L +    ++V+ I  + +A GN I  ND   +   +L  +  +   D+  VEV  + IA    VGS    +N+G LVHP T+ E+L+ +  +L++  +  GT ++G+  +GA +  N   A  G DTT  E+
Sbjct:   13 IGVLSLSTEKFGLAPYFAEENTINKFK-KVLDV-PVKALNIGNSSLIGALCCANSYGIILPPFTLNREKTILSDFLKENDIDIIVKEINAKNTAFGNLILLNDKGCIISEEL-ADFRKTFEDIFDVEVVAKNIAELPTVGSNGVATNKGALVHPDTTDEELELIKDVLKLKCIERGTASKGTPSVGACIVANSNGAVIGGDTTGPEM 216          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_METVS (Translation initiation factor 6 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 68/219 (31.05%), Postives = 113/219 (51.60%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            M  +  F     +GV S  T  + L  +   ++     +  L   IPV + +I  + +IG LCVGN NGLL+P+  T +E+  +++ L +    V +++++ + +A GN I  N+   +   +L +   ++I DVLGVE      A    VGS    +++G LVHP T   +L+ ++ +L+V  V  GT NRG   +G+ +  N   A  G DT+  EL
Sbjct:    1 MIIKTYFSGVSTIGVLSLATEDYGLFPLSVEKNTLEKMKEVLN--IPVTQLNISNSSLIGSLCVGNSNGLLVPNIVTSKEIALIKDFLKENSLDVNLEKLKAKNTAFGNLILTNNKGCIISEEL-QNFRKVIEDVLGVESGVGNYASLPTVGSNGVATDKGCLVHPLTDELELEWITDVLKVDYVGRGTANRGVTSVGSCILANTKGAVIGGDTSGPEL 216          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_ARCFU (Translation initiation factor 6 OS=Archaeoglobus fulgidus GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 58/203 (28.57%), Postives = 103/203 (50.74%), Query Frame = 1
Query:  103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            +G+++K++  + +V +       +  E   VDVI    T I G+ ++G +   N  G ++       EL+ L  SL   V    IE  ++  GN +  ND   +A+ +++    E +AD + +E+ + T+ G   VG     +NRGGL +P+ +  +  +L  +  V ++ GTVN G++++G+GL  N      G DTT  EL
Sbjct:   11 IGLYAKVSEEYAVVGVNHEPLIDAIQEKLDVDVIV---TKIAGSELVGAMMALNSRGAVVSDQVLSSELRELEKSLDVLV----IETPMTCFGNNLLINDRGGIANPEMESSVVEKVADFMDIELVKGTVGGIKTVGMAAVVTNRGGLANPNINEWEAKKLQEVAGVEVLTGTVNFGTDMVGSGLVANSKGYVVGRDTTGFEL 206          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_UNCMA (Translation initiation factor 6 OS=Uncultured methanogenic archaeon RC-I GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 60/168 (35.71%), Postives = 88/168 (52.38%), Query Frame = 1
Query:  208 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            VV+T I  + +IG +  GN NG ++   T D+E     N L +   V R++ +++A GN I  ND  AL H  L  +  E I   L VEV R TI G   VG     +N+G LVHP  + E+L  L  L ++P+  GTV+ GS ++G+ +         G+ T+  EL
Sbjct:   46 VVRTLINESTLIGSMMTGNSNGFIVSDLTLDREA----NLLQEHGKVTRLKGKMTAAGNLILANDTAALVHPALTDKNIEAIEKTLKVEVRRGTIGGLKTVGMAGCATNKGILVHPRATEEELTVLEDLFKLPVDIGTVSFGSPLVGSAILATTKGLITGTRTSGPEL 209          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_METLZ (Translation initiation factor 6 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 65/218 (29.82%), Postives = 110/218 (50.46%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL---QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            M   L       +GV++++     +V +   + F     AE +DV  V++T + G+ +IG L  GN  G ++     D EL+ L+    D ++   + E ++A GN I  ND  A+ H D+     E++AD L V++   + AG   VG  C+ +N G L+   ++ E++++L   +    V +  G+VN GS +IG GL +N      G+ TT  EL
Sbjct:    1 MDPTLSLNGDPNIGVYARVFEDLAVVPVEAPKEFRDKI-AEALDV-EVIETFVQGSSVIGLLLTGNSRGFVVSGLIQDSELEILQE-YGDCLL---LGEEMNAAGNVILTNDSFAVVHPDMSSAMREMVADFLKVKIIPMSFAGVGTVGMTCACTNTGVLLPARSTPEEIEKLERSIDDANVAIGTGSVNMGSGLIGTGLLINSKGYLAGNATTGYEL 212          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_SULAC (Translation initiation factor 6 OS=Sulfolobus acidocaldarius GN=eif6 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 60/169 (35.50%), Postives = 92/169 (54.44%), Query Frame = 1
Query:  208 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEV-FRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            +++T+I  + ++G L  GN + +LLP T    E++ ++    D V V+ ++ R +ALGN I  N H AL + DL       +   L ++   + TIA  I VGS    +++ GLVH   + E+L +LS L +V L +GTVN GS  I +GL  N      GS TT  E+
Sbjct:   47 IIQTTISKSVLVGILVTGNNDVILLPRTALADEIKVIKEQAKD-VRVEVVDIRPTALGNIILSNTHGALIYQDLSEAEINKVKKALQIDTAIKGTIANIITVGSVAVITDKAGLVHIDATEEELKKLSELFKVKLDSGTVNFGSVFIRSGLVANRNGVLVGSSTTGAEI 214          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_SULTO (Translation initiation factor 6 OS=Sulfolobus tokodaii GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 63/185 (34.05%), Postives = 102/185 (55.14%), Query Frame = 1
Query:  160 ESFYSTFEAELVDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            +    TF+ E      +++T+I  + +IG    GN N +LLP    D+E++ +++   D V V+ ++ R +ALGN I  N + AL + +L     + I + L ++ + + +IA  I VGS    +++ GLVH  T+ E+LD+LS L +V +  GTVN GS  I +GL  N      GS TT  E+
Sbjct:   37 QKIQETFKTE------IIQTTIAKSFLIGIFVAGNNNVILLPRNVDDEEVKKIKDIARD-VRVEILDIRPTALGNIILTNSYGALIYPELSSIEFKKIKESLQIDNIEKGSIANIITVGSVGVITDKAGLVHIDTTEEELDKLSKLFRVKIDTGTVNFGSAFIHSGLIANRNGVLVGSATTGPEI 214          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_METMP (Translation initiation factor 6 OS=Methanococcus maripaludis GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 62/174 (35.63%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  202 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            IP  + +I  + +IG LCVGN NGLL+P+ TT++EL+ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N   A  G DT+  E+
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPNITTEKELELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILANTKGAVVGGDTSGPEI 216          
BLAST of FC929915 vs. ExPASy Swiss-Prot
Match: IF6_METM6 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 61/174 (35.06%), Postives = 95/174 (54.60%), Query Frame = 1
Query:  202 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 711
            IP  + +I  + +IG LCVGN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N   A  G DT+  E+
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELATVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVGGDTSGPEI 216          
The following BLAST results are available for this feature:
BLAST of FC929915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_PICTO1.327e-1931.16Translation initiation factor 6 OS=Picrophilus tor... [more]
IF6_META31.733e-1931.88Translation initiation factor 6 OS=Methanococcus a... [more]
IF6_METVS2.264e-1931.05Translation initiation factor 6 OS=Methanococcus v... [more]
IF6_ARCFU2.264e-1928.57Translation initiation factor 6 OS=Archaeoglobus f... [more]
IF6_UNCMA2.956e-1935.71Translation initiation factor 6 OS=Uncultured meth... [more]
IF6_METLZ2.956e-1929.82Translation initiation factor 6 OS=Methanocorpuscu... [more]
IF6_SULAC5.043e-1935.50Translation initiation factor 6 OS=Sulfolobus acid... [more]
IF6_SULTO1.467e-1834.05Translation initiation factor 6 OS=Sulfolobus toko... [more]
IF6_METMP1.916e-1835.63Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_METM62.503e-1835.06Translation initiation factor 6 OS=Methanococcus m... [more]

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Properties
Property NameValue
Genbank descriptionC34001G10EF PostHarvC1 Citrus clementina cDNA clone C34001G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929915 ID=FC929915; Name=FC929915; organism=Citrus clementina; type=EST; length=711bp
GATCGCAGGTCTTGTGCTTTGCTTCGGTCCATCTTTTAATCGGTTCAATT
CTGTTAATTTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTG
AGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATT
GGAGGTTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGTAGATGT
TATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGC
TTTGTGTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGAC
CAAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCA
GCGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATG
ACCATGTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATT
ATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAATTGCCGGTAA
TATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCC
ACCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAA
GTACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGC
TGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGGTCAGACACCACGG
CAACCGAACTC
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