FC929919

Overview
NameFC929919
Unique NameFC929919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15054 contig Ccv1_Contig15054:2..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: KLDC1_MOUSE (Kelch domain-containing protein 1 OS=Mus musculus GN=Klhdc1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  237 NNLHVFDLETLTWSVADVTGDVPP-PRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWT--LLSNGDAGPPHRSYHS-TAADDRHVYIFGGCGVSG-RLNDLWGFDVVDRKWIQ 584
            N++HVFD +T TWS  ++ G VPP PR   + A +G+  Y+FGGR      +N+L+  +  T  W+  +  NG++ P HRS+H+ TA  D  +++FGG       L+D W  ++    W Q
Sbjct:  171 NDVHVFDTKTRTWSQPEIKGGVPPQPRAAHSCAVLGNKGYVFGGR-VLQTRMNDLHYLNLDTWVWSGRISVNGES-PKHRSWHTLTAITDDKLFLFGGLNADNIPLSDGWIHNITTNCWKQ 289          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: ACBP4_ARATH (Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 46/156 (29.49%), Postives = 71/156 (45.51%), Query Frame = 3
Query:  159 SSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAAD-DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGG 623
            + H++     K+ + GG  T        + VFD  T+TWS+    G  P  R G ++  VG T+ +FGG+D     LN+L+  D  T  W  +      P  RS H+ A   +R + IFGG   +   +DL   D+   +W +    G+    R G
Sbjct:  245 AGHSLIAWDNKLLSIGGH-TKDPSESMQVKVFDPHTITWSMLKTYGKPPVSRGGQSVTMVGKTLVIFGGQDAKRSLLNDLHILDLDTMTWDEIDAVGVSPSPRSDHAAAVHAERFLLIFGGGSHATCFDDLHVLDLQTMEWSRPAQQGDAPTPRAG 399          

HSP 2 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 42/137 (30.66%), Postives = 68/137 (49.64%), Query Frame = 3
Query:  114 TWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA-VGHTIYMFGGRDGTHKE-LNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGG 518
            TW  L   G  P +R   ++T+VG+ +  FGG+   R  + N+LH+ DL+T+TW   D  G  P PR     A      + +FGG  G+H    ++L+  D +T +W+  +     P  R+ H+      + +I GG
Sbjct:  281 TWSMLKTYGKPPVSRGGQSVTMVGKTLVIFGGQDAKRSLL-NDLHILDLDTMTWDEIDAVGVSPSPRSDHAAAVHAERFLLIFGG--GSHATCFDDLHVLDLQTMEWSRPAQQGDAPTPRAGHAGVTIGENWFIVGG 414          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: GEFF_DICDI (Ras guanine nucleotide exchange factor F OS=Dictyostelium discoideum GN=gefF PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 42/132 (31.82%), Postives = 67/132 (50.76%), Query Frame = 3
Query:  138 GSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGG--RDGTHKEL---NELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGG 518
            GS P  R+ H   +    +Y FGG ++P  P  N+++VF  +T TWS     G  P PR G T       + +FGG   D T K+    N+++S +  T QW+ + +    P  R++H+      ++Y+FGG
Sbjct:  245 GSAPSIRTRHTGVLYNNSMYIFGG-YSPSGP-KNDIYVFSFDTQTWSEVQTEGTKPSPRYGHTAVVESGHMIVFGGISCDQTTKQQTVNNDIFSLNLDTKQWSQVLS-TCPPSPRTHHTATMHKGNMYVFGG 373          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: DYHA_CHLRE (Dynein alpha chain, flagellar outer arm OS=Chlamydomonas reinhardtii GN=ODA11 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 36/111 (32.43%), Postives = 55/111 (49.55%), Query Frame = 3
Query:  264 TLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGG---RDGTHKELNELYSFDTRTN---QWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKW 578
            ++ W V +  G+ P PR G +   +G    +FGG   +DG     N+LY  DT      +W  L   +A PP   + + A DD+ + +FGG     R ND+W F+  D+ W
Sbjct:    2 SIFWEVPNAQGEAPCPRSGHSFTVLGERFVLFGGCGRKDGKAAAFNDLYELDTSDPDEYKWKELVVANAPPPRARHAAIALDDKRLLVFGGLNKRIRYNDVWLFNYDDKSW 112          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: ACBP5_ARATH (Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 42/137 (30.66%), Postives = 68/137 (49.64%), Query Frame = 3
Query:  114 TWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA-VGHTIYMFGGRDGTHKE-LNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGG 518
            +W  L   G  P +R   ++T+VG+ +  FGG+   R  + N+LH+ DL+T+TW   D  G  P PR     A      + +FGG  G+H    ++L+  D +T +W+  +     P  R+ H+      + YI GG
Sbjct:  282 SWSILKTYGKPPISRGGQSVTLVGKSLVIFGGQDAKRSLL-NDLHILDLDTMTWEEIDAVGSPPTPRSDHAAAVHAERYLLIFGG--GSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAGHAGVTIGENWYIVGG 415          

HSP 2 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 39/126 (30.95%), Postives = 62/126 (49.21%), Query Frame = 3
Query:  249 VFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAAD-DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGG 623
            VFDL   +WS+    G  P  R G ++  VG ++ +FGG+D     LN+L+  D  T  W  +    + P  RS H+ A   +R++ IFGG   +   +DL   D+   +W ++   G+    R G
Sbjct:  275 VFDLHCCSWSILKTYGKPPISRGGQSVTLVGKSLVIFGGQDAKRSLLNDLHILDLDTMTWEEIDAVGSPPTPRSDHAAAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAG 400          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: TAG53_CAEEL (Putative protein tag-53 OS=Caenorhabditis elegans GN=tag-53 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 35/118 (29.66%), Postives = 57/118 (48.31%), Query Frame = 3
Query:   96 MASAKGTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGG-------RDGTHKELNELYSFDTRTNQW 428
            M  +   W  +    + P  ++SHA   +   V++ GGEF       NN+ V+++ +  WS  +V+GD+P PR   T+    + +YMFGG          T    NEL+ FD  + +W
Sbjct:  271 MPVSSSVWDLIHPTNNAPTGKASHASIAIDDVVWSIGGEFFDGSSDPNNIDVYNVTSRIWSKVEVSGDMPKPRFDHTVVKYKNKLYMFGGVTKTQVRHQTTQAATNELWIFDMGSKKW 388          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: Y9963_DICDI (Probable serine/threonine-protein kinase DDB_G0272254 OS=Dictyostelium discoideum GN=DDB_G0272254 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 45/140 (32.14%), Postives = 69/140 (49.29%), Query Frame = 3
Query:  144 GPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVF---DLETLTWSVADVTGD-VPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSN--GDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLND 545
            GP +  +H    +G K Y FGG    ++   N L+V    D  T+ WS   ++G  +P PR G T    G+   +FGG DG  + LN+LY  +  T  W+ ++N  G   P  R  H++      + IFGG G++   N+
Sbjct:  701 GPESIYNHDYCRIGNKFYLFGGYVAGKL--SNKLYVLTIMDDSTVHWSSPRISGGCIPSPRYGHTFTRYGNRFLLFGGYDG-EQCLNDLYILEPETMCWSTVTNIKGGQTPSERFGHTSTILGEKLIIFGGKGINNNNNN 837          
The following BLAST results are available for this feature:
BLAST of FC929919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
KLDC1_MOUSE3.458e-1236.36Kelch domain-containing protein 1 OS=Mus musculus ... [more]
ACBP4_ARATH5.898e-1229.49Acyl-CoA-binding domain-containing protein 4 OS=Ar... [more]
GEFF_DICDI1.006e-1131.82Ras guanine nucleotide exchange factor F OS=Dictyo... [more]
DYHA_CHLRE1.006e-1132.43Dynein alpha chain, flagellar outer arm OS=Chlamyd... [more]
ACBP5_ARATH2.241e-1130.66Acyl-CoA-binding domain-containing protein 5 OS=Ar... [more]
TAG53_CAEEL4.993e-1129.66Putative protein tag-53 OS=Caenorhabditis elegans ... [more]
Y9963_DICDI6.521e-1132.14Probable serine/threonine-protein kinase DDB_G0272... [more]

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Properties
Property NameValue
Genbank descriptionC34001H02EF PostHarvC1 Citrus clementina cDNA clone C34001H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929919 ID=FC929919; Name=FC929919; organism=Citrus clementina; type=EST; length=705bp
GAGAGCCAGAAGAAAGAAATCAGGCTGCAGAGTGGAGACTGGAGAGTAAC
TCTTGGGTCTTGGCCATTCTCCCCTATCCTTATCCCAAGTCATAAATGGC
TTCTGCCAAAGGCACATGGATCAAGCTTGACCAAAAGGGTTCCGGGCCTG
GAGCCAGAAGCTCGCATGCAATTACCATAGTAGGACAAAAGGTCTATGCT
TTCGGGGGCGAGTTCACACCACGTGTCCCGGTTGACAACAACCTCCATGT
CTTCGACCTCGAAACCCTAACATGGTCTGTGGCCGATGTTACTGGGGACG
TCCCTCCGCCACGCGTCGGTGTCACAATGGCTGCGGTTGGACATACCATC
TATATGTTTGGTGGTCGGGATGGTACACACAAGGAGCTCAATGAGCTGTA
CTCTTTTGACACGCGTACAAACCAGTGGACCCTATTATCTAACGGTGATG
CTGGCCCCCCTCATAGGAGCTACCACTCAACGGCCGCTGATGATCGACAC
GTGTACATCTTCGGCGGTTGTGGTGTTTCAGGCCGGCTTAATGATCTATG
GGGTTTTGATGTTGTTGATAGAAAATGGATCCAATATCCATCGGCAGGGG
AGAACTGCAAGGGTAGAGGTGGGCCCGGGTTGATAGTGACCCAGGGGAGA
TATGGGTTGTGTATGGTTTTGCTGGAGTGGAAGTGGATGATGTGCATTGC
TTTGA
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