FC929920

Overview
NameFC929920
Unique NameFC929920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_LACRJ (S-adenosylmethionine synthetase OS=Lactobacillus reuteri (strain JCM 1112) GN=metK PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.765e-68
Identity = 136/233 (58.37%), Postives = 172/233 (73.82%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            E  LFTSESV+EGHPDK+ DQISDAILD  L++DPDS+VA ET   T LV+VFG ++TKA VN ++IVRDT R IG+     G DADNC V+  I++QSPDIAQGV   L  R       ++IGAGDQG MFGYATDETPE+MPL+ VL+ +L  K+ ++RK+G   +LRPD K +VTVE Y+EN    P+RV TV++STQHD  V+ D+I  D+KE VI+ VIP EYLD++T
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDELLKKDPDSRVAVETSVTTGLVLVFGEVSTKAYVNIQQIVRDTIRKIGYTDGKYGFDADNCAVITAIDEQSPDIAQGVDDSLETREGEADPLDKIGAGDQGLMFGYATDETPEYMPLTLVLSHKLMRKIAQLRKDGVISYLRPDAKAEVTVE-YDENDK--PLRVDTVVLSTQHDPEVSLDQIKKDIKEQVIEAVIPAEYLDDQT 232          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_LACRD (S-adenosylmethionine synthetase OS=Lactobacillus reuteri (strain DSM 20016) GN=metK PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.765e-68
Identity = 136/233 (58.37%), Postives = 172/233 (73.82%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            E  LFTSESV+EGHPDK+ DQISDAILD  L++DPDS+VA ET   T LV+VFG ++TKA VN ++IVRDT R IG+     G DADNC V+  I++QSPDIAQGV   L  R       ++IGAGDQG MFGYATDETPE+MPL+ VL+ +L  K+ ++RK+G   +LRPD K +VTVE Y+EN    P+RV TV++STQHD  V+ D+I  D+KE VI+ VIP EYLD++T
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDELLKKDPDSRVAVETSVTTGLVLVFGEVSTKAYVNIQQIVRDTIRKIGYTDGKYGFDADNCAVITAIDEQSPDIAQGVDDSLETREGEADPLDKIGAGDQGLMFGYATDETPEYMPLTLVLSHKLMRKIAQLRKDGVISYLRPDAKAEVTVE-YDENDK--PLRVDTVVLSTQHDPEVSLDQIKKDIKEQVIEAVIPAEYLDDQT 232          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_DROME (S-adenosylmethionine synthetase OS=Drosophila melanogaster GN=M(2)21AB PE=1 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 3.612e-68
Identity = 127/237 (53.59%), Postives = 174/237 (73.42%), Query Frame = 3
Query:   18 GSQFLKKNMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTI 728
            G+ +  ++  TFLFTSESV EGHPDK+CDQISDAILDA L+QDP++KVACET  KT ++++ G IT+KA V+Y+K+VR+T ++IG+     G D   C VL+ ++QQSP+IA GV  H+++  EEIGAGDQG MFGYATDET E MPL+ VLA +L  K+ E+R++    W RPD KTQVT EY    G+ VP RVHT+++S QH E ++ + + +++ E V+K VIP +Y+D  TI
Sbjct:   18 GNSYDMEDGATFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQKVVRETVQHIGYDDSSKGFDFKTCNVLLALDQQSPEIAAGV--HVNRAEEEIGAGDQGIMFGYATDETEECMPLTVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYLFNQGSAVPKRVHTIVVSMQHSEKISLETLRSEVMEKVVKVVIPAKYIDANTI 252          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK5_CAEEL (Probable S-adenosylmethionine synthetase 5 OS=Caenorhabditis elegans GN=sams-5 PE=2 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 6.161e-68
Identity = 128/227 (56.39%), Postives = 168/227 (74.01%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            FLFTSESV+EGHPDK+CDQISDA+LDA L QDP +KVACET TKT ++M+ G IT+KA V+Y+ +VR+  + IG+     G D   C VLV +EQQSP+IA GV  H+ K   ++GAGDQG MFGYATDET E MPL+ +L+ +L  KL E+R++G   W+RPD KTQVT+EY +E GA VP+RVHTV+ISTQH   ++ +++  +L E VIK VIP   +D  T++
Sbjct:    6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGV--HVDKDIADVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNYKLHELRRSGELEWVRPDSKTQVTIEYSSEGGACVPLRVHTVVISTQHSPDISLEDLRKELIEKVIKVVIPGNLIDNDTVY 230          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_GEOTN (S-adenosylmethionine synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=metK PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.993e-67
Identity = 136/232 (58.62%), Postives = 162/232 (69.83%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            LFTSESV EGHPDK+CDQISDAILDA LE+DP+++VACET   T LV+V G ITT   V+  +IVRDT R IG+     G DAD C VL  I++QSPDIA GV   L  R         E IGAGDQG MFG+A +ET E MPL   LA +L  +L EVRK    P+LRPDGKTQVT+E Y+ENG   PVRV T++ISTQH   + +D+I  D+KEHVIKP++P E LDE T
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPRIVRDTVREIGYTRAKFGFDADTCAVLTAIDEQSPDIAMGVDQALEAREGQMTDEEIEAIGAGDQGLMFGFACNETEELMPLPISLAHRLSRRLAEVRKTDVLPYLRPDGKTQVTIE-YDENGK--PVRVDTIVISTQHHPEIEHDQIERDMKEHVIKPIVPAELLDENT 235          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_GEOSW (S-adenosylmethionine synthetase OS=Geobacillus sp. (strain WCH70) GN=metK PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.896e-67
Identity = 134/232 (57.76%), Postives = 162/232 (69.83%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            LFTSESV EGHPDK+CDQISDAILDA LE+DP+++VACET   T LV+V G ITT   V+  KIVRDT R IG+     G DAD C VL  I++QSPDIA GV   L  R         E IGAGDQG MFG+A +ET E MPL   LA +L  +L+EVRK    P+LRPDGKTQVTVE Y+ENG   PVR+ T+++S QH   +T ++I  D+KEHVIKP++P E +DE T
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPKIVRDTVREIGYTRAKYGFDADTCAVLTSIDEQSPDIAMGVDKALEAREGQMTDEEIEAIGAGDQGLMFGFACNETKELMPLPISLAHRLARRLSEVRKEAILPYLRPDGKTQVTVE-YDENGK--PVRIDTIVVSAQHHPEITQEQIERDIKEHVIKPIVPAELIDENT 235          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.381e-66
Identity = 131/230 (56.96%), Postives = 159/230 (69.13%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            LFTSESV EGHPDK+CDQISDA+LDA   +DP+++VACET   T LVMV G ITT   V+  KI R+T +NIG+     G D + C V+  I++QS DIA GV   L  R  E      +GAGDQG MFG+AT+ET EFMP    +A +L  +LTEVRKNGT P+LRPDGKTQVTVEY N+     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP E LDE T
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAIFAKDPNARVACETAVTTGLVMVMGEITTNCYVDIPKIARETIKNIGYDRAKYGFDCETCSVMTTIDEQSSDIAMGVDEALESRAGEKIDIDAVGAGDQGMMFGFATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENT 229          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.381e-66
Identity = 131/230 (56.96%), Postives = 159/230 (69.13%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            LFTSESV EGHPDK+CDQISDA+LDA   +DP+++VACET   T LVMV G ITT   V+  KI R+T +NIG+     G D + C V+  I++QS DIA GV   L  R  E      +GAGDQG MFG+AT+ET EFMP    +A +L  +LTEVRKNGT P+LRPDGKTQVTVEY N+     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP E LDE T
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAIFAKDPNARVACETAVTTGLVMVMGEITTNCYVDIPKIARETIKNIGYDRAKYGFDCETCSVMTTIDEQSSDIAMGVDEALESRAGEKIDIDAVGAGDQGMMFGFATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENT 229          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_CLOD6 (S-adenosylmethionine synthetase OS=Clostridium difficile (strain 630) GN=metK PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.285e-65
Identity = 136/236 (57.63%), Postives = 160/236 (67.80%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            M   LFTSESV EGHPDK+CDQISD+ILDA LE+DP S+VACET   T LV+V G I+T A V+  K+VR+T R IG+     G D D C V+  I++QS DIA GV   L  +         E++GAGDQG MFG+A +ETPE MPL   LA +L  +LTEVRK G   +LRPDGKTQVTVEY         VRVHTVLIS QH ETV+ND+I  DL  HVIK VIP E LDE+T
Sbjct:    1 MARHLFTSESVTEGHPDKICDQISDSILDALLEKDPQSRVACETTVTTGLVLVAGEISTSAYVDIPKLVRETVREIGYTRAKYGFDCDTCAVITSIDEQSGDIAMGVDEGLESKTGEEIEEEIEKVGAGDQGIMFGFACNETPELMPLPISLAHKLSRRLTEVRKTGLVDYLRPDGKTQVTVEYEGSKA----VRVHTVLISAQHCETVSNDKIREDLINHVIKEVIPAELLDEET 232          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_GEOKA (S-adenosylmethionine synthetase OS=Geobacillus kaustophilus GN=metK PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.678e-65
Identity = 133/232 (57.33%), Postives = 160/232 (68.97%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            LFTSESV EGHPDK+CDQISDAILDA LE+DP+++VACET   T LV+V G ITT   V+  +IVRDT R IG+     G DAD C VL  I++QSPDIA GV   L  R         E IGAGDQG MFG+A +ET E MP+   LA +L  +L EVRK    P+LRPDGKTQVT+E Y+ENG   PVRV T+++S QH   +T ++I  D+KE VIKPV+P E LDE T
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPRIVRDTVREIGYTRAKYGFDADTCAVLTSIDEQSPDIAMGVDRALEAREGQMTDEEIEAIGAGDQGLMFGFACNETEELMPMPISLAHRLARRLAEVRKTDVLPYLRPDGKTQVTIE-YDENGK--PVRVDTIVVSAQHHPEITQEQIQRDIKEQVIKPVVPAELLDENT 235          
The following BLAST results are available for this feature:
BLAST of FC929920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LACRJ2.765e-6858.37S-adenosylmethionine synthetase OS=Lactobacillus r... [more]
METK_LACRD2.765e-6858.37S-adenosylmethionine synthetase OS=Lactobacillus r... [more]
METK_DROME3.612e-6853.59S-adenosylmethionine synthetase OS=Drosophila mela... [more]
METK5_CAEEL6.161e-6856.39Probable S-adenosylmethionine synthetase 5 OS=Caen... [more]
METK_GEOTN3.993e-6758.62S-adenosylmethionine synthetase OS=Geobacillus the... [more]
METK_GEOSW8.896e-6757.76S-adenosylmethionine synthetase OS=Geobacillus sp.... [more]
METK_CLOPS3.381e-6656.96S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP13.381e-6656.96S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOD61.285e-6557.63S-adenosylmethionine synthetase OS=Clostridium dif... [more]
METK_GEOKA1.678e-6557.33S-adenosylmethionine synthetase OS=Geobacillus kau... [more]

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Properties
Property NameValue
Genbank descriptionC34001H03EF PostHarvC1 Citrus clementina cDNA clone C34001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929920 ID=FC929920; Name=FC929920; organism=Citrus clementina; type=EST; length=733bp
GAATTCTAGATCTACCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACT
TTTTTGTTCACTTCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTG
TGATCAGATCTCCGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAG
ATAGCAAGGTGGCTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTT
TTTGGAGGGATCACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCG
TGACACTTGCCGCAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATG
CTGATAACTGTAAGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATC
GCCCAGGGCGTTCATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGC
TGGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAAT
TTATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACC
GAGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGAC
ACAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGA
GAGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAAT
GATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCC
CTGAGAGTACCTTGATGAGAAGACTATCTTCCA
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