FC929920

Overview
NameFC929920
Unique NameFC929920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_BIFLI (S-adenosylmethionine synthetase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=metK PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.728e-60
Identity = 126/224 (56.25%), Postives = 154/224 (68.75%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGV---------HGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI 698
            L ++ESV EGHPDK+CDQISDAILD  L QDP S VA ET   T + +VFG +T+K   + +  VR+T RNIG+ S +VGLDAD+C V+V I +QS +I QGV              +R E  GAGDQG MFGYATDETP  MPL   LA +L  +LTEVRK+G  P LRPDGKTQVT+EY + +    PVR+ TVLISTQHD  VT D +A +LK+HVI PV+
Sbjct:    7 LISAESVTEGHPDKVCDQISDAILDDLLVQDPSSHVAVETSAATGVFLVFGEVTSKGYCDVQSKVRETLRNIGYTSSEVGLDADSCGVVVAITEQSAEINQGVARLTGDQETAASREERYEAQGAGDQGVMFGYATDETPTLMPLPIYLAHRLAFRLTEVRKSGEVPHLRPDGKTQVTIEYDDND---KPVRLDTVLISTQHDPEVTQDWLAVELKKHVIDPVL 227          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SYMTH (S-adenosylmethionine synthetase OS=Symbiobacterium thermophilum GN=metK PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.175e-60
Identity = 122/231 (52.81%), Postives = 157/231 (67.97%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQG------VHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            +LFTSESV EGHPDK+ DQISDA+LDA L  DP ++VACET   T LV+V G ITT A V+   +VRD  R+IG+     G D   C V+  I+ QSPDIAQG      V G ++++  EIGAGDQG MFG+A DETPE MPL   LA +L  +L +VRKNGT P+LRPDGKTQVT+EY  E+G   P R+ T++IS QHD   T ++I  D+ ++VI  V+    +D++T
Sbjct:    8 YLFTSESVTEGHPDKMADQISDAVLDAILALDPRARVACETLLTTGLVVVTGEITTHAYVDIPNLVRDVVRDIGYTRAKYGFDGSTCGVMTAIDPQSPDIAQGVDVAIEVRGEVNEKELEIGAGDQGMMFGFACDETPELMPLPISLAHRLARRLAQVRKNGTLPYLRPDGKTQVTIEY--EDGR--PKRIDTIVISAQHDPDTTQEQIRKDVIDYVILDVVDRNLIDDRT 234          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_LACJO (S-adenosylmethionine synthetase OS=Lactobacillus johnsonii GN=metK PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.175e-60
Identity = 127/237 (53.59%), Postives = 158/237 (66.67%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            E  LFTSESV+EGHPDK+ DQISDAILDA L +DPD +VACET   T LV+V G I+T A V+ + +VR T   IG+   ++G D +NC +LV I++QS DIA GV+  L  R         ++IGAGDQG MFG+A  ETPE MPL   LA  L  ++  +RK G   WLRPD K QVTVEY +EN    P R+ TV+ISTQ D TV+NDEI   + + VIK VIP +YLD+ T F
Sbjct:    4 EKRLFTSESVSEGHPDKVADQISDAILDAILAKDPDGRVACETTVTTGLVLVVGEISTSAYVDIQSVVRKTILEIGYNRPELGFDGNNCAILVDIDEQSSDIADGVNESLETRENQQDKDDLDKIGAGDQGLMFGFAIKETPELMPLPISLAHSLMRRVASLRKEGRLDWLRPDAKAQVTVEYDDEN---KPKRIDTVVISTQTDATVSNDEIREAMIDMVIKKVIPSQYLDKDTKF 237          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_STRS7 (S-adenosylmethionine synthetase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=metK PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.065e-60
Identity = 129/235 (54.89%), Postives = 158/235 (67.23%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            E  LFTSESV+EGHPDK+ DQISDAILDA L +DP++ VA ETC  T  V VFG I+T A V+  ++VRDT   IG+   + G  A++  V   + +QSPDIAQGV+  L  R  +      IGAGDQG MFG+A DETPE MPL   L+ QL  +L  +RK+G   +LRPD K+QVTVEY   +    PVRV TV+ISTQHD  V+ND+I  D+ E VIK VIP  YLDEKT F
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAKDPEAHVAAETCVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSPDIAQGVNEALEAREGQSDDFNVIGAGDQGLMFGFAIDETPELMPLPISLSHQLVRRLAALRKSGEISYLRPDAKSQVTVEYDEHD---KPVRVDTVVISTQHDPEVSNDQIRQDMIEQVIKAVIPAHYLDEKTRF 234          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_STREM (S-adenosylmethionine synthetase OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=metK PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.065e-60
Identity = 129/235 (54.89%), Postives = 158/235 (67.23%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            E  LFTSESV+EGHPDK+ DQISDAILDA L +DP++ VA ETC  T  V VFG I+T A V+  ++VRDT   IG+   + G  A++  V   + +QSPDIAQGV+  L  R  +      IGAGDQG MFG+A DETPE MPL   L+ QL  +L  +RK+G   +LRPD K+QVTVEY   +    PVRV TV+ISTQHD  V+ND+I  D+ E VIK VIP  YLDEKT F
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAKDPEAHVAAETCVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSPDIAQGVNEALEAREGQSDDFNVIGAGDQGLMFGFAIDETPELMPLPISLSHQLVRRLATLRKSGEISYLRPDAKSQVTVEYDEHD---KPVRVDTVVISTQHDPEVSNDQIRQDMIEQVIKAVIPAHYLDEKTRF 234          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_STRE4 (S-adenosylmethionine synthetase OS=Streptococcus equi subsp. equi (strain 4047) GN=metK PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.065e-60
Identity = 129/235 (54.89%), Postives = 158/235 (67.23%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            E  LFTSESV+EGHPDK+ DQISDAILDA L +DP++ VA ETC  T  V VFG I+T A V+  ++VRDT   IG+   + G  A++  V   + +QSPDIAQGV+  L  R  +      IGAGDQG MFG+A DETPE MPL   L+ QL  +L  +RK+G   +LRPD K+QVTVEY   +    PVRV TV+ISTQHD  V+ND+I  D+ E VIK VIP  YLDEKT F
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAKDPEAHVAAETCVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSPDIAQGVNEALEAREGQSDDFNAIGAGDQGLMFGFAIDETPELMPLPISLSHQLVRRLATLRKSGEISYLRPDAKSQVTVEYDEHD---KPVRVDTVVISTQHDPEVSNDQIRQDMIEQVIKAVIPAHYLDEKTRF 234          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_THEM4 (S-adenosylmethionine synthetase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=metK PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.053e-59
Identity = 130/231 (56.28%), Postives = 155/231 (67.10%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE---------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDE 719
            LFTSESV EGHPDK+ DQISDAILDA LEQDP S+VA ET   T + +V G +TT+A V+ + IVR T   IG+     G D + C VL  I  QSPDIA GV   L  +  E         +GAGDQG MFGYAT+ET E MPL  +LA +L  KL+E+RK+GT P+LRPDGKTQVTVE Y+EN    PVRV TVLISTQH+  VT  EI   L ++VI P+IP E  D+
Sbjct:    4 LFTSESVTEGHPDKVADQISDAILDAMLEQDPRSRVAVETLVTTGIAIVSGEVTTRAYVDIQDIVRKTIMEIGYTRAKYGFDGETCAVLSSIHSQSPDIAMGVDKALEAKEGELNAQDDLELVGAGDQGMMFGYATNETKELMPLPIMLAHKLALKLSEIRKSGTVPFLRPDGKTQVTVE-YDENDR--PVRVDTVLISTQHEPNVTIAEIKEALVKYVIDPIIPEELRDD 231          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_STRSV (S-adenosylmethionine synthetase OS=Streptococcus sanguinis (strain SK36) GN=metK PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.376e-59
Identity = 131/236 (55.51%), Postives = 160/236 (67.80%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP-------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            E  LFTSESV+EGHPDK+ DQISDAILDA L QDPD+ VA ET   T  V VFG I+T A V+  ++VRDT   IG+ + + G  A+   V   + +QSPDIAQGV+  L  R        + IGAGDQG MFG+A DETPE MPL   L+ +L  +L E+RK+G   +LRPD K+QVTVE Y+EN    PVRV TV+ISTQHD   TN+EI  D+ E VIK VIP +YLD+KT F
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAVLSQDPDAHVAAETAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTNTEYGFSAETVGVHPSLVEQSPDIAQGVNEALEVRGNADQDPLDLIGAGDQGLMFGFAVDETPELMPLPISLSHKLVRRLAELRKSGEIAYLRPDAKSQVTVE-YDENDQ--PVRVDTVVISTQHDPDATNEEIHRDVIEKVIKAVIPAQYLDDKTKF 235          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_STRA3 (S-adenosylmethionine synthetase OS=Streptococcus agalactiae serotype III GN=metK PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.376e-59
Identity = 130/236 (55.08%), Postives = 160/236 (67.80%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVH------GHLSKRP-EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            E  LFTSESV+EGHPDK+ DQISDAILDA LEQDPD+ VA ET   T  V VFG I+T A V+  ++VR+T   IG+   + G  A++  V   + +QSPDIAQGV+      G L + P + IGAGDQG MFG+A DETPE MPL   LA QL  KLT++RK+G   +LRPD K+QVTVEY   N    P+RV  V+ISTQHD  VTND++  D+ E VI  VIP  YLD++T F
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILEQDPDAHVAAETAVYTGSVHVFGEISTTAYVDINRVVRNTIAEIGYDKAEYGFSAESVGVHPSLVEQSPDIAQGVNEALEVRGSLEQDPLDLIGAGDQGLMFGFAVDETPELMPLPISLAHQLVKKLTDLRKSGELTYLRPDAKSQVTVEYDENN---QPIRVDAVVISTQHDPNVTNDQLHKDVIEKVINEVIPSHYLDDQTKF 235          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_ROSCS (S-adenosylmethionine synthetase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=metK PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.376e-59
Identity = 124/234 (52.99%), Postives = 157/234 (67.09%), Query Frame = 3
Query:   57 FTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKAN-VNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPE---------EIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY-YNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            FTSESV EGHPDK+CDQ+SDA+LDA L  DP ++VACET T T L++V G +T +   +  E+IVR T ++IG+     G DAD C V+V I  QSPDIAQGV+  L  R +          IGAGDQG MFG+A +ETPE MPL   LA ++G +L+ +RK+G  P+LRPDGK+QVT+EY Y       PVRV TVL+S QH   VT ++I  D+  HVI  VIP + LDEKT
Sbjct:   13 FTSESVTEGHPDKICDQVSDAVLDAFLSHDPRARVACETATTTGLIVVIGEVTYEQGYIPIEEIVRKTIKDIGYTDAAYGFDADTCGVMVAIHGQSPDIAQGVNRALEVRSDGQVTEEEVATIGAGDQGMMFGFACNETPELMPLPIALAHRIGRRLSRLRKDGVLPYLRPDGKSQVTIEYSYGR-----PVRVDTVLVSNQHAPDVTQEQIRHDIIHHVIHEVIPNDLLDEKT 241          
The following BLAST results are available for this feature:
BLAST of FC929920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BIFLI4.728e-6056.25S-adenosylmethionine synthetase OS=Bifidobacterium... [more]
METK_SYMTH6.175e-6052.81S-adenosylmethionine synthetase OS=Symbiobacterium... [more]
METK_LACJO6.175e-6053.59S-adenosylmethionine synthetase OS=Lactobacillus j... [more]
METK_STRS78.065e-6054.89S-adenosylmethionine synthetase OS=Streptococcus e... [more]
METK_STREM8.065e-6054.89S-adenosylmethionine synthetase OS=Streptococcus e... [more]
METK_STRE48.065e-6054.89S-adenosylmethionine synthetase OS=Streptococcus e... [more]
METK_THEM41.053e-5956.28S-adenosylmethionine synthetase OS=Thermosipho mel... [more]
METK_STRSV1.376e-5955.51S-adenosylmethionine synthetase OS=Streptococcus s... [more]
METK_STRA31.376e-5955.08S-adenosylmethionine synthetase OS=Streptococcus a... [more]
METK_ROSCS1.376e-5952.99S-adenosylmethionine synthetase OS=Roseiflexus cas... [more]

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Properties
Property NameValue
Genbank descriptionC34001H03EF PostHarvC1 Citrus clementina cDNA clone C34001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929920 ID=FC929920; Name=FC929920; organism=Citrus clementina; type=EST; length=733bp
GAATTCTAGATCTACCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACT
TTTTTGTTCACTTCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTG
TGATCAGATCTCCGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAG
ATAGCAAGGTGGCTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTT
TTTGGAGGGATCACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCG
TGACACTTGCCGCAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATG
CTGATAACTGTAAGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATC
GCCCAGGGCGTTCATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGC
TGGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAAT
TTATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACC
GAGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGAC
ACAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGA
GAGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAAT
GATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCC
CTGAGAGTACCTTGATGAGAAGACTATCTTCCA
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