FC929920

Overview
NameFC929920
Unique NameFC929920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_PECCP (S-adenosylmethionine synthetase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=metK PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.428e-56
Identity = 118/228 (51.75%), Postives = 157/228 (68.86%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V G ITT A V+ E+I R T R+IG+V+ ++G DA++C VL  I +QSPDI QGV     + P E GAGDQG MFGYAT+ET   MP     A +L  + +EVRK+G+ PWLRPD K+QVT  Y  ++G +    +  V++STQH E ++  ++   + E +IKPV+P E+L   T
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRRTVRDIGYVNSEMGFDANSCAVLSAIGKQSPDINQGVD---RRDPLEQGAGDQGLMFGYATNETDVLMPAPVTYAHRLVQRQSEVRKSGSLPWLRPDAKSQVTFLY--DDGKI--AGIDAVVLSTQHSEEISQKDLHEAVMEEIIKPVLPAEWLSANT 221          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_LEGPL (S-adenosylmethionine synthetase OS=Legionella pneumophila (strain Lens) GN=metK PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.428e-56
Identity = 117/227 (51.54%), Postives = 155/227 (68.28%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            E ++FTSESV+EGHPDK+ DQISDAILDA L QDP ++VACE   KT +V+V G ITTKA V+ E I R   ++IG+ S  +G D ++C VL  I +QSPDIAQGV    +K    +GAGDQG MFGYA+ ET  FMP     A +L  KL + RK+G  PWLRPD K Q+T++Y  E G  +PV V TV+ STQH   + + ++   ++E +IK V+P E+L++KT
Sbjct:    3 EVYVFTSESVSEGHPDKIADQISDAILDAILAQDPKARVACEVLVKTGMVLVGGEITTKAWVDVEDITRHVIKDIGYNSSQMGFDWESCAVLSAIGKQSPDIAQGVDNQQTK---ILGAGDQGLMFGYASRETDVFMPAPIAYAHRLMEKLAKARKSGQLPWLRPDAKCQLTLKY--EQG--MPVEVDTVVFSTQHSPDIEHKDLVEAIREEIIKSVLPAEWLNDKT 222          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_ERWCT (S-adenosylmethionine synthetase OS=Erwinia carotovora subsp. atroseptica GN=metK PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.428e-56
Identity = 119/228 (52.19%), Postives = 157/228 (68.86%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V G ITT A V+ E+I R T R+IG+V+ ++G DA++C VL  I +QSPDI QGV     + P E GAGDQG MFGYAT+ET   MP     A +L  + +EVRK+G+ PWLRPD K+QVT  Y  ++G +    +  V++STQH E V+  ++   + E +IKPV+P E+L   T
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRRTVRDIGYVNSEMGFDANSCAVLSAIGKQSPDINQGVD---RRDPLEQGAGDQGLMFGYATNETDVLMPAPVTYAHRLVHRQSEVRKSGSLPWLRPDAKSQVTFLY--DDGKI--AGIDAVVLSTQHSEDVSQKDLHEAVMEEIIKPVLPAEWLSAST 221          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SYNSC (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain CC9605) GN=metK PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.171e-56
Identity = 118/229 (51.53%), Postives = 151/229 (65.94%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDV-GLDADNCKVLVYIEQQSPDIAQGVH---GHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKP 692
            M  ++FTSESV EGHPDK+CDQ+SDA+LDA L QDP S+VACET   T L M+ G +T+KA V++  +VR+  + IG+      G DA++C VLV ++QQSPDIAQGV+    H     + +GAGDQG MFGYA +ETPE MPL   LA +L  +L EVR NGT  +L PDGKTQV+V Y N+     PV + T+LISTQH        DE    + I  DL  HV++P
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDALLAQDPSSRVACETVVNTGLCMITGEVTSKAQVDFIHLVRNVIKEIGYSGARAGGFDANSCAVLVALDQQSPDIAQGVNEADDHAGDPLDLVGAGDQGIMFGYACNETPELMPLPISLAHRLSRRLAEVRHNGTLGYLLPDGKTQVSVVYENDK----PVSIDTILISTQHTAEVDGISDEQGIRERITEDLWTHVVEP 225          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SHEB9 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS195) GN=metK PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.171e-56
Identity = 119/230 (51.74%), Postives = 154/230 (66.96%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M   LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT +V+V G +TT A V+ E+I R T R IG+   D+G DAD+C VL  I +QSPDI QGV       P E GAGDQG MFGYA +ET   MP     A  L  + +EVRKNGT PWLRPD K+QVT  Y  ++G +  V +  V++STQH + V+  ++   + E +IKPV+P ++L++ T F
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGVD---RADPAEQGAGDQGLMFGYANNETDVLMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAY--DDGKI--VGIDAVVLSTQHRDDVSQADLIEGVMETIIKPVLPAQWLNKDTKF 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SHEB8 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS185) GN=metK PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.171e-56
Identity = 119/230 (51.74%), Postives = 154/230 (66.96%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M   LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT +V+V G +TT A V+ E+I R T R IG+   D+G DAD+C VL  I +QSPDI QGV       P E GAGDQG MFGYA +ET   MP     A  L  + +EVRKNGT PWLRPD K+QVT  Y  ++G +  V +  V++STQH + V+  ++   + E +IKPV+P ++L++ T F
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGVD---RADPAEQGAGDQGLMFGYANNETDVLMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAY--DDGKI--VGIDAVVLSTQHRDDVSQADLIEGVMETIIKPVLPAQWLNKDTKF 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SHEB5 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=metK PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.171e-56
Identity = 119/230 (51.74%), Postives = 154/230 (66.96%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M   LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT +V+V G +TT A V+ E+I R T R IG+   D+G DAD+C VL  I +QSPDI QGV       P E GAGDQG MFGYA +ET   MP     A  L  + +EVRKNGT PWLRPD K+QVT  Y  ++G +  V +  V++STQH + V+  ++   + E +IKPV+P ++L++ T F
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGVD---RADPAEQGAGDQGLMFGYANNETDVLMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAY--DDGKI--VGIDAVVLSTQHRDDVSQADLIEGVMETIIKPVLPAQWLNKDTKF 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SHEB2 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS223) GN=metK PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.171e-56
Identity = 119/230 (51.74%), Postives = 154/230 (66.96%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M   LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT +V+V G +TT A V+ E+I R T R IG+   D+G DAD+C VL  I +QSPDI QGV       P E GAGDQG MFGYA +ET   MP     A  L  + +EVRKNGT PWLRPD K+QVT  Y  ++G +  V +  V++STQH + V+  ++   + E +IKPV+P ++L++ T F
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGVD---RADPAEQGAGDQGLMFGYANNETDVLMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAY--DDGKI--VGIDAVVLSTQHRDDVSQADLIEGVMETIIKPVLPAQWLNKDTKF 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_LARHH (S-adenosylmethionine synthetase OS=Laribacter hongkongensis (strain HLHK9) GN=metK PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.171e-56
Identity = 115/230 (50.00%), Postives = 153/230 (66.52%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M  +LFTSESV+EGHPDK+ DQISDAILDA L QD  ++VA ET   T LV++ G ITT ANV+Y  + R+T + IG+ + D+G DA  C VLV  ++QSPDIAQGV+        + GAGDQG MFGYA DETP  MP     A +L  +  E+RK+G  PWLRPD K+Q+T  Y +E G  +P R+ TV++STQH   +++D +   + E ++KPV+P   L  +T F
Sbjct:    1 MSEYLFTSESVSEGHPDKVADQISDAILDAILTQDKHARVAAETLVNTGLVVLAGEITTHANVDYIHVARETIKRIGYNTSDLGFDAKGCAVLVGYDKQSPDIAQGVNEGQGIDLNQ-GAGDQGLMFGYACDETPTLMPFPIYYAHRLVQRQAELRKDGRLPWLRPDAKSQITCAYDSETG--LPKRIDTVVLSTQHSPDISHDMLTEAVIEDIVKPVLPAHMLTAETKF 227          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_TREPS (S-adenosylmethionine synthetase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=metK PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.142e-56
Identity = 121/232 (52.16%), Postives = 151/232 (65.09%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHG-HLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI-P*EYLDEKTIF 731
            METF FTSESV+EGHPDKLCDQISDA+LDACL QDP S VACET   T+L+++ G I+T+A++N  +I RD   +IG+VS DVGLDA +  VL     QSPDIAQGVHG  L +     GAGDQG MFG+A  ETPEFMP   + A  +      +R     PWLRPD K+QVTV+Y        PVR+  V+ S QHD + + + I   L E +++P + P   LDE T F
Sbjct:    1 METF-FTSESVSEGHPDKLCDQISDAVLDACLSQDPHSCVACETFASTSLILIGGEISTRAHINLTQIARDVAADIGYVSADVGLDAASMAVLDMTHHQSPDIAQGVHGAGLKEFAGSQGAGDQGIMFGFACRETPEFMPAPLMCAHAVVRYAATLRHERRVPWLRPDAKSQVTVQYEGHR----PVRISAVVFSQQHDPSPSYETIRETLIEEIVRPALAPTGLLDENTRF 227          
The following BLAST results are available for this feature:
BLAST of FC929920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_PECCP2.428e-5651.75S-adenosylmethionine synthetase OS=Pectobacterium ... [more]
METK_LEGPL2.428e-5651.54S-adenosylmethionine synthetase OS=Legionella pneu... [more]
METK_ERWCT2.428e-5652.19S-adenosylmethionine synthetase OS=Erwinia carotov... [more]
METK_SYNSC3.171e-5651.53S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SHEB93.171e-5651.74S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB83.171e-5651.74S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB53.171e-5651.74S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB23.171e-5651.74S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_LARHH3.171e-5650.00S-adenosylmethionine synthetase OS=Laribacter hong... [more]
METK_TREPS4.142e-5652.16S-adenosylmethionine synthetase OS=Treponema palli... [more]

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Properties
Property NameValue
Genbank descriptionC34001H03EF PostHarvC1 Citrus clementina cDNA clone C34001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929920 ID=FC929920; Name=FC929920; organism=Citrus clementina; type=EST; length=733bp
GAATTCTAGATCTACCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACT
TTTTTGTTCACTTCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTG
TGATCAGATCTCCGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAG
ATAGCAAGGTGGCTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTT
TTTGGAGGGATCACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCG
TGACACTTGCCGCAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATG
CTGATAACTGTAAGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATC
GCCCAGGGCGTTCATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGC
TGGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAAT
TTATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACC
GAGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGAC
ACAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGA
GAGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAAT
GATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCC
CTGAGAGTACCTTGATGAGAAGACTATCTTCCA
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