FC929920

Overview
NameFC929920
Unique NameFC929920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_TREPA (S-adenosylmethionine synthetase OS=Treponema pallidum GN=metK PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.142e-56
Identity = 121/232 (52.16%), Postives = 151/232 (65.09%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHG-HLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI-P*EYLDEKTIF 731
            METF FTSESV+EGHPDKLCDQISDA+LDACL QDP S VACET   T+L+++ G I+T+A++N  +I RD   +IG+VS DVGLDA +  VL     QSPDIAQGVHG  L +     GAGDQG MFG+A  ETPEFMP   + A  +      +R     PWLRPD K+QVTV+Y        PVR+  V+ S QHD + + + I   L E +++P + P   LDE T F
Sbjct:    1 METF-FTSESVSEGHPDKLCDQISDAVLDACLSQDPHSCVACETFASTSLILIGGEISTRAHINLTQIARDVAADIGYVSADVGLDAASMAVLDMTHHQSPDIAQGVHGAGLKEFAGSQGAGDQGIMFGFACRETPEFMPAPLMCAHAVVRYAATLRHERRVPWLRPDAKSQVTVQYEGHR----PVRISAVVFSQQHDPSPSYETIRETLIEEIVRPALAPTGLLDENTRF 227          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SHEHH (S-adenosylmethionine synthetase OS=Shewanella halifaxensis (strain HAW-EB4) GN=metK PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.142e-56
Identity = 116/228 (50.88%), Postives = 155/228 (67.98%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +VMV G +TT A V+ E+I R T R+IG+   D+G DAD+C +L  I +QSPDI QGV       P+E GAGDQG MFGYA +ET   MP     +  L  + +EVRK+ T PWLRPD K+QVT   YN +G++    +  V++STQH ++V+  ++   + E +IKPV+P ++L + T
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRKTVRDIGYTHSDMGFDADSCAILNVIGKQSPDINQGVD---RADPKEQGAGDQGLMFGYANNETDSLMPAPITYSHMLVKRQSEVRKDKTLPWLRPDAKSQVTFA-YNPDGSI--AGIDAVVLSTQHCDSVSQSDLIEGVMETIIKPVLPAKWLSKDT 222          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_VIBHB (S-adenosylmethionine synthetase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.410e-56
Identity = 119/230 (51.74%), Postives = 157/230 (68.26%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +VMV G +TT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P+E GAGDQG MFGYAT+ET   MP     + +L  K  EVRK+G   +LRPD K+QVT +Y  + G +  V +  V++STQH ++VT  ++   + E +IKPV+P E++ + T F
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRETVREIGYVHSDMGFDANSCAVLNTIGKQSPDINQGVD---KADPKEQGAGDQGIMFGYATNETEILMPAPITYSHRLVQKQAEVRKSGKLDFLRPDAKSQVTFQY--DQGKI--VGIDAVVLSTQHCDSVTTPDLREAVMEEIIKPVLPSEWITKDTNF 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_STRZJ (S-adenosylmethionine synthetase OS=Streptococcus pneumoniae (strain JJA) GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.410e-56
Identity = 125/236 (52.97%), Postives = 157/236 (66.53%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP-------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            E  LFTSESV+EGHPDK+ DQISDAILDA L +DP++ VA ET   T  V VFG I+T A V+  ++VRDT   IG+ + + G  A+   V   + +QSPDIAQGV+  L  R        + IGAGDQG MFG+A DET E MPL   L+ +L  +L E+RK+    +LRPD K+QVTVE Y+EN    PVRV TV+ISTQHD   TN++I  D+ + VIK VIP  YLD+KT F
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAKDPEAHVAAETAVYTGSVHVFGEISTNAYVDINRVVRDTIAEIGYTNTEYGFSAETVGVHPSLVEQSPDIAQGVNEALEVRGNADQDPLDLIGAGDQGLMFGFAVDETEELMPLPIALSHKLVRRLAELRKSEEISYLRPDAKSQVTVE-YDENDR--PVRVDTVVISTQHDPEATNEQIHQDVIKKVIKEVIPSSYLDDKTKF 235          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SHEPW (S-adenosylmethionine synthetase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.410e-56
Identity = 116/228 (50.88%), Postives = 151/228 (66.23%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +VMV G +TT A V+ E+I R T R IG+   D+G DAD+C +L  I +QSPDI QGV       P+E GAGDQG MFGYA +ET   MP     + +L  + +EVRK+ T PWLRPD K+QVT  Y N+        +  V++STQH E V+  ++   + E +IKPV+P ++L + T
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDADSCAILNAIGKQSPDINQGVD---RADPKEQGAGDQGLMFGYANNETDVLMPAPITYSHKLVKRQSEVRKDKTLPWLRPDAKSQVTFAYNNDGSI---AGIDAVVLSTQHREDVSQADLIEGVMETIIKPVLPAKWLSKDT 222          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_PSEHT (S-adenosylmethionine synthetase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.410e-56
Identity = 119/230 (51.74%), Postives = 152/230 (66.09%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQD  ++VACET  KT +VMV G ITT A V+ E+I R T R+IG+ + D+G DAD+C +L  I +QSPDI QGV       PEE GAGDQG MFGYA +ET   MP     + +L  +  +VRK+G   WLRPD K+QVT  Y  ENG   PV +  V++STQH E ++  ++   + E +IKPV+P E +   T F
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDSHARVACETYVKTGMVMVGGEITTSAWVDIEEITRKTIRDIGYTNSDMGFDADSCAILNTIGKQSPDINQGVD---RTSPEEQGAGDQGLMFGYACNETEVLMPAPITYSHRLVQRQAQVRKSGELNWLRPDAKSQVTFAY--ENGK--PVGIDAVVLSTQHSEDISQKDLIEAVMETIIKPVLPAELITSATKF 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_AZOSB (S-adenosylmethionine synthetase OS=Azoarcus sp. (strain BH72) GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.410e-56
Identity = 112/221 (50.68%), Postives = 152/221 (68.78%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYL 713
            FLFTSESV+EGHPDK+ DQISD +LDA L +DP ++VACET   T LV++ G ITT A+ NY +I +D  R IG+ + D+G D  +C VL  I +QS DIAQGV+       ++ GAGDQG MFGYAT+ETP  MPL    A ++  +  EVRK+G  PWLRPD K+Q+TV+Y +      PV + TV++STQH+  V++ +I+  + E +IKPV+P E +
Sbjct:    5 FLFTSESVSEGHPDKVADQISDGVLDAILAEDPKARVACETLVSTGLVVISGEITTSAHPNYREIAQDVVRRIGYDNSDIGFDYKSCAVLAAINRQSSDIAQGVNEGEGLDLDQ-GAGDQGLMFGYATNETPSLMPLPIYYAHRIMQRQAEVRKDGRLPWLRPDAKSQLTVKYVDGK----PVAIDTVVVSTQHNPEVSHAQISEAVIEEIIKPVLPKELM 220          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SYNJB (S-adenosylmethionine synthetase OS=Synechococcus sp. GN=metK PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.065e-56
Identity = 121/228 (53.07%), Postives = 150/228 (65.79%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKPV 695
            +F+SESV EGHPDK+CDQISDAI+DA L  DP S+VA E    T LV++ G IT++A VN+ ++VRD    IG+     G  A++C VLV  ++QSPDIAQGV+  L  R  +      +GAGDQG MFG+A DETPE MPL   LA +L  +L  VRKNGT P+LRPDGKTQVTV Y  E G   PV +HT+LISTQH        +E    + I ADL E V+ PV
Sbjct:    1 MFSSESVTEGHPDKICDQISDAIVDALLTADPLSRVAAEVVVNTGLVLLTGEITSQAQVNFTRLVRDKVAEIGYTDAKNGFCAESCAVLVAFDEQSPDIAQGVNMALESRGSQEDQFDLVGAGDQGLMFGFACDETPELMPLPISLAHRLSRQLATVRKNGTLPYLRPDGKTQVTVAY--EEGR--PVGIHTLLISTQHTPTIGAITEEAAVQERIRADLWEAVVTPV 224          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SYNPX (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain WH8102) GN=metK PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.228e-56
Identity = 117/229 (51.09%), Postives = 150/229 (65.50%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDV-GLDADNCKVLVYIEQQSPDIAQGV---HGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKP 692
            M  ++FTSESV EGHPDK+CDQ+SDA+LDA L QDP S+VACET   T L M+ G +T+KA V++  +VR+  + IG+      G DA++C VLV ++QQSPDIAQGV     H     + +GAGDQG MFGYA +ETPE MPL   LA +L  +L EVR NG+  +L PDGKTQV+V Y N+     PV + T+LISTQH        DE    + I  DL  HV++P
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDALLAQDPSSRVACETVVNTGLCMITGEVTSKAQVDFIHLVRNVIKEIGYSGARAGGFDANSCAVLVALDQQSPDIAQGVDEADDHEGDPLDRVGAGDQGIMFGYACNETPELMPLPISLAHRLAKRLAEVRHNGSLEYLLPDGKTQVSVVYENDK----PVAIDTILISTQHTAEVAGISDEQGIRERITEDLWTHVVEP 225          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SHESW (S-adenosylmethionine synthetase OS=Shewanella sp. (strain W3-18-1) GN=metK PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.228e-56
Identity = 115/228 (50.44%), Postives = 149/228 (65.35%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            M   LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT +V+V G +TT A V+ E++ R T R IG+   D+G DAD+C VL  I +QSPDI QGV       P+E GAGDQG MFGYA++ET   MP     A  L  + +EVRKNGT PWLRPD K+QVT  Y N       V +  +++STQH   +   ++   + E +IKPV+P ++L + T
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEELTRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGVD---RADPKEQGAGDQGLMFGYASNETEILMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAYENNK----IVGIDAIVLSTQHSPDIAQADLIEGVMESIIKPVLPAQWLSKDT 221          
The following BLAST results are available for this feature:
BLAST of FC929920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_TREPA4.142e-5652.16S-adenosylmethionine synthetase OS=Treponema palli... [more]
METK_SHEHH4.142e-5650.88S-adenosylmethionine synthetase OS=Shewanella hali... [more]
METK_VIBHB5.410e-5651.74S-adenosylmethionine synthetase OS=Vibrio harveyi ... [more]
METK_STRZJ5.410e-5652.97S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_SHEPW5.410e-5650.88S-adenosylmethionine synthetase OS=Shewanella piez... [more]
METK_PSEHT5.410e-5651.74S-adenosylmethionine synthetase OS=Pseudoalteromon... [more]
METK_AZOSB5.410e-5650.68S-adenosylmethionine synthetase OS=Azoarcus sp. (s... [more]
METK_SYNJB7.065e-5653.07S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SYNPX9.228e-5651.09S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SHESW9.228e-5650.44S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]

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Properties
Property NameValue
Genbank descriptionC34001H03EF PostHarvC1 Citrus clementina cDNA clone C34001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929920 ID=FC929920; Name=FC929920; organism=Citrus clementina; type=EST; length=733bp
GAATTCTAGATCTACCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACT
TTTTTGTTCACTTCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTG
TGATCAGATCTCCGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAG
ATAGCAAGGTGGCTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTT
TTTGGAGGGATCACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCG
TGACACTTGCCGCAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATG
CTGATAACTGTAAGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATC
GCCCAGGGCGTTCATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGC
TGGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAAT
TTATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACC
GAGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGAC
ACAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGA
GAGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAAT
GATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCC
CTGAGAGTACCTTGATGAGAAGACTATCTTCCA
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