FC929920

Overview
NameFC929920
Unique NameFC929920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SYNWW (S-adenosylmethionine synthetase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=metK PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.205e-55
Identity = 122/238 (51.26%), Postives = 153/238 (64.29%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGV-------HGHL-SKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M   LFTSESV EGHPDK+ DQISDAILDA +E DP  +VA ET   T LV+V G ITT   V+  ++VR T  +IG+     G DA+ C VL  +++QS DIA GV        G +  K  + IGAGDQG MFGYA++ET   MP+   LA+++  +L EVRK G  P+LRPDGKTQVTVEY +      P+RV TV++S QH   V++  I  D+ EHVIK VIP E +D  TIF
Sbjct:    1 MARTLFTSESVTEGHPDKVADQISDAILDAIMELDPYGRVAAETIVTTGLVLVAGEITTNCYVDIPRLVRSTIEDIGYTRAKYGFDAETCAVLTSLDEQSGDIALGVDRAFEAKKGEMDDKELDAIGAGDQGMMFGYASNETAVLMPMPIYLASKMAERLGEVRKEGIIPYLRPDGKTQVTVEYEDYK----PLRVTTVVVSAQHHPEVSSATIEKDIIEHVIKAVIPPEMIDAHTIF 234          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SHEPC (S-adenosylmethionine synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=metK PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.205e-55
Identity = 115/228 (50.44%), Postives = 149/228 (65.35%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            M   LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT +V+V G +TT A V+ E++ R T R IG+   D+G DAD+C VL  I +QSPDI QGV       P+E GAGDQG MFGYA++ET   MP     A  L  + +EVRKNGT PWLRPD K+QVT  Y N       V +  +++STQH   +   ++   + E +IKPV+P ++L + T
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEELTRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGVD---RADPKEQGAGDQGLMFGYASNETEILMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAYENNK----IVGIDAIVLSTQHSPDIAQADLIEGVMETIIKPVLPAQWLSKDT 221          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_MOOTA (S-adenosylmethionine synthetase OS=Moorella thermoacetica (strain ATCC 39073) GN=metK PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.205e-55
Identity = 118/231 (51.08%), Postives = 148/231 (64.07%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVH-------GHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            LFTSESV EGHPDK+ D+I+DA+LDA   +D  ++VACE    T L++V G ITT   V+  ++ R+T R IG+     G D D C V+  I++QSPDIA GV+       G      E +GAGDQG MFGYAT ETPEFMP+   LA  L  +L  VRK    P+LRPDGK+QVTVEY  E+G   PVRV TV+ISTQH   +    +  ++ E VIKPVIP E LD +T
Sbjct:    5 LFTSESVTEGHPDKIADRIADAVLDAIYAKDNQARVACECLVSTGLILVAGQITTDCYVDIPRVARETVREIGYTRAKFGFDCDTCAVITSIDEQSPDIAMGVNEAWEKKQGEARDEVETLGAGDQGMMFGYATSETPEFMPMPIALAHALTRRLAAVRKERILPYLRPDGKSQVTVEY--EDGR--PVRVDTVVISTQHRPDIDMATLRDEVLETVIKPVIPAEMLDNRT 231          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SHEON (S-adenosylmethionine synthetase OS=Shewanella oneidensis GN=metK PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.574e-55
Identity = 114/228 (50.00%), Postives = 151/228 (66.23%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            M   LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT +V+V G +TT A V+ E++ R T R IG++  D+G DAD+C VL  I +QSPDI QGV       P+E GAGDQG MFGYA++ET   MP     A  L  + +EVRKNGT PWLRPD K+QVT  Y +       V +  +++STQH   +   ++   + E +IKPV+P ++L++ T
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEELTRKTVREIGYIHSDMGFDADSCAVLNAIGKQSPDINQGVD---RADPKEQGAGDQGLMFGYASNETDILMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAYEDNK----IVGIDAIVLSTQHSPDIAQADLIEGVMETIIKPVLPAQWLNKDT 221          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_HERAR (S-adenosylmethionine synthetase OS=Herminiimonas arsenicoxydans GN=metK PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.574e-55
Identity = 113/223 (50.67%), Postives = 154/223 (69.06%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDE 719
            FLFTSESV+EGHPDK+ DQISDAILDA  +QDP ++VA ET   T LV++ G ITT ANV+Y ++ RDT + IG+ + D G+D  +C VLV  ++QSPDIAQGV        ++ GAGDQG MFGYA DETPE MP +   A ++  + +E+RK+G  PWLRPD K+QVT+ Y +      PV + T+++STQH   + + +I   + E +IKPV+P E+L +
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFQQDPKARVAAETLCNTGLVVLAGEITTFANVDYIEVARDTIKRIGYDNADYGIDYKSCSVLVAYDKQSPDIAQGVDEGAGIDLDQ-GAGDQGLMFGYACDETPELMPAAIHYAHRIVERQSELRKDGRLPWLRPDAKSQVTLRYVDGR----PVSIDTIVLSTQHAPEMQHKDIEEAVIESIIKPVVPAEWLKD 222          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_ACIAD (S-adenosylmethionine synthetase OS=Acinetobacter sp. (strain ADP1) GN=metK PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.056e-55
Identity = 115/229 (50.22%), Postives = 153/229 (66.81%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            E  +FTSESV+EGHPDK+ DQISDAILDA L++DP ++VACET  KT  V++ G ITT ANV++E IVR T   IG+   D+G D   C ++  I +QSP+IAQGV     ++PE+ GAGDQG MFGYA+ ET   MP     A +L  +  E+R++G  PWLRPD K+QVT  Y  ENG  +PVR+  V++STQHD  ++  ++   + E ++KPVIP E     T F
Sbjct:    3 EYAVFTSESVSEGHPDKMADQISDAILDAILKEDPYARVACETLVKTGAVVLAGEITTTANVDFEAIVRQTVNGIGYHHSDLGFDGSTCAIINMIGKQSPEIAQGVD---RQKPEDQGAGDQGLMFGYASRETDVLMPAPISYAHRLMERQAELRRSGALPWLRPDAKSQVTFAY--ENG--MPVRLDAVVLSTQHDPEISQAQLKEAVIEEIVKPVIPSEMFHAGTKF 224          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_THEEB (S-adenosylmethionine synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=metK PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.685e-55
Identity = 120/230 (52.17%), Postives = 150/230 (65.22%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP-------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKPV 695
            +LF+SESV EGHPDK+CDQI+DAILDA L QDP S+VA E    T LV++ G ITTKA VNY  + R     IG+   + G  A++C VLV +++QSPDIA+GV      R        + IGAGDQG MFGYA +ETPE+MPL   LA ++  +L  VRK G  P+LRPDGKTQVTV Y  E+G   PV + T+LISTQH        +E+    +I ADL E V+KPV
Sbjct:    3 YLFSSESVTEGHPDKICDQIADAILDALLTQDPQSRVAAEVVVNTGLVLITGEITTKAQVNYVNLARQKIHEIGYTDANNGFAANSCAVLVALDEQSPDIARGVDTAQEAREQLSDAELDRIGAGDQGIMFGYACNETPEYMPLPISLAHRMARRLAAVRKTGQLPYLRPDGKTQVTVIY--EDGK--PVGIDTILISTQHTATIDDISEESAVQAKIKADLWEAVVKPV 228          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_ACIBY (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain AYE) GN=metK PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.685e-55
Identity = 115/229 (50.22%), Postives = 151/229 (65.94%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            E  +FTSESV+EGHPDK+ DQISDAILDA L++DP ++VACET  KT  V++ G ITT AN++ E +VR T   IG+   D+G D   C V+  I +QSP+IAQGV     ++PE+ GAGDQG MFGYA+ ET   MP     A +L  +  E+R++G  PWLRPD K+QVT  Y  ENG   PVR+  V++STQHD  +T  ++   + E +IKP+IP E     T F
Sbjct:    3 EYAVFTSESVSEGHPDKMADQISDAILDAILKEDPYARVACETLVKTGAVVLAGEITTTANIDVEAVVRQTVNGIGYHHSDLGFDGSTCAVINMIGKQSPEIAQGVD---RQKPEDQGAGDQGLMFGYASRETDVLMPAPISYAHRLMERQAELRRSGALPWLRPDAKSQVTFAY--ENGK--PVRLDAVVLSTQHDPEITQTQLKEAVIEEIIKPIIPAEMFHAATKF 224          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_ACIBT (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=metK PE=3 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.685e-55
Identity = 115/229 (50.22%), Postives = 151/229 (65.94%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            E  +FTSESV+EGHPDK+ DQISDAILDA L++DP ++VACET  KT  V++ G ITT AN++ E +VR T   IG+   D+G D   C V+  I +QSP+IAQGV     ++PE+ GAGDQG MFGYA+ ET   MP     A +L  +  E+R++G  PWLRPD K+QVT  Y  ENG   PVR+  V++STQHD  +T  ++   + E +IKP+IP E     T F
Sbjct:    3 EYAVFTSESVSEGHPDKMADQISDAILDAILKEDPYARVACETLVKTGAVVLAGEITTTANIDVEAVVRQTVNGIGYHHSDLGFDGSTCAVINMIGKQSPEIAQGVD---RQKPEDQGAGDQGLMFGYASRETDVLMPAPISYAHRLMERQAELRRSGALPWLRPDAKSQVTFAY--ENGK--PVRLDAVVLSTQHDPEITQTQLKEAVIEEIIKPIIPAEMFHAATKF 224          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_ACIBS (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain SDF) GN=metK PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.685e-55
Identity = 115/229 (50.22%), Postives = 151/229 (65.94%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            E  +FTSESV+EGHPDK+ DQISDAILDA L++DP ++VACET  KT  V++ G ITT AN++ E +VR T   IG+   D+G D   C V+  I +QSP+IAQGV     ++PE+ GAGDQG MFGYA+ ET   MP     A +L  +  E+R++G  PWLRPD K+QVT  Y  ENG   PVR+  V++STQHD  +T  ++   + E +IKP+IP E     T F
Sbjct:    3 EYAVFTSESVSEGHPDKMADQISDAILDAILKEDPYARVACETLVKTGAVVLAGEITTTANIDVEAVVRQTVNGIGYHHSDLGFDGSTCAVINMIGKQSPEIAQGVD---RQKPEDQGAGDQGLMFGYASRETDVLMPAPISYAHRLMERQAELRRSGALPWLRPDAKSQVTFAY--ENGK--PVRLDAVVLSTQHDPEITQTQLKEAVIEEIIKPIIPAEMFHAATKF 224          
The following BLAST results are available for this feature:
BLAST of FC929920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SYNWW1.205e-5551.26S-adenosylmethionine synthetase OS=Syntrophomonas ... [more]
METK_SHEPC1.205e-5550.44S-adenosylmethionine synthetase OS=Shewanella putr... [more]
METK_MOOTA1.205e-5551.08S-adenosylmethionine synthetase OS=Moorella thermo... [more]
METK_SHEON1.574e-5550.00S-adenosylmethionine synthetase OS=Shewanella onei... [more]
METK_HERAR1.574e-5550.67S-adenosylmethionine synthetase OS=Herminiimonas a... [more]
METK_ACIAD2.056e-5550.22S-adenosylmethionine synthetase OS=Acinetobacter s... [more]
METK_THEEB2.685e-5552.17S-adenosylmethionine synthetase OS=Thermosynechoco... [more]
METK_ACIBY2.685e-5550.22S-adenosylmethionine synthetase OS=Acinetobacter b... [more]
METK_ACIBT2.685e-5550.22S-adenosylmethionine synthetase OS=Acinetobacter b... [more]
METK_ACIBS2.685e-5550.22S-adenosylmethionine synthetase OS=Acinetobacter b... [more]

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Properties
Property NameValue
Genbank descriptionC34001H03EF PostHarvC1 Citrus clementina cDNA clone C34001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929920 ID=FC929920; Name=FC929920; organism=Citrus clementina; type=EST; length=733bp
GAATTCTAGATCTACCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACT
TTTTTGTTCACTTCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTG
TGATCAGATCTCCGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAG
ATAGCAAGGTGGCTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTT
TTTGGAGGGATCACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCG
TGACACTTGCCGCAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATG
CTGATAACTGTAAGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATC
GCCCAGGGCGTTCATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGC
TGGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAAT
TTATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACC
GAGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGAC
ACAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGA
GAGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAAT
GATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCC
CTGAGAGTACCTTGATGAGAAGACTATCTTCCA
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