FC929920

Overview
NameFC929920
Unique NameFC929920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:49..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_PROMT (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL2A) GN=metK PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.020e-54
Identity = 112/220 (50.91%), Postives = 150/220 (68.18%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVS-DDVGLDADNCKVLVYIEQQSPDIAQGVH---GHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIK 689
            M  ++FTSESV EGHPDK+CDQ+SDA+LDACL +DP S+VACE    T L ++ G IT+KA V++ K+VR+  +NIG+ S  D G DA++C VLV ++QQS DIAQGV+    H +   +++GAGDQG MFG+A DETPE MPL   LA +L  +L  VR      +L PDGKTQV+V Y  ENG  VP  + T+LISTQH   V    +  ++++ + K
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDACLSEDPTSRVACEAVVNTGLCLITGEITSKAEVDFNKLVREVIKNIGYRSASDGGFDANSCAVLVALDQQSSDIAQGVNEAEDHSTDPLDQVGAGDQGIMFGFACDETPELMPLPISLAHRLARRLALVRHQQLIDYLLPDGKTQVSVSY--ENG--VPCSIDTILISTQHKSEVDGITLEEEIQKRIAK 216          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_PROMM (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=metK PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.020e-54
Identity = 115/229 (50.22%), Postives = 149/229 (65.07%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDV-GLDADNCKVLVYIEQQSPDIAQGVH---GHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKP 692
            M  ++FTSESV EGHPDK+CDQ+SDA+LDA L QDP S+VACET   T L ++ G +T+ A V++  +VR+  R IG+      G DA +C VLV ++QQSPDIAQGV+    H     +++GAGDQG MFGYA DETPE MPL   LA +L  +L  VR +G+  +L PDGKTQV+V Y N+     PV + T+LISTQH        DE    + I  DL  HV++P
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDALLAQDPSSRVACETVVNTGLCLITGEVTSNAQVDFIHLVRNVIREIGYSGARAGGFDATSCAVLVALDQQSPDIAQGVNEADDHSGDPLDKVGAGDQGIMFGYACDETPELMPLPISLAHRLARQLAAVRHDGSLSYLLPDGKTQVSVVYENDR----PVAIDTILISTQHTSEVEGISDENGIRERITQDLWTHVVEP 225          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_ALHEH (S-adenosylmethionine synthetase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=metK PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.020e-54
Identity = 108/228 (47.37%), Postives = 151/228 (66.23%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            M  +LFTSESV+EGHPDK+ DQISDA+LDA L +DP  ++ACET  KT ++++ G +TT AN++YE + R+T + IG+   ++G D + C V+  + +QS DIAQGV       PEE GAGDQG MFGYA++ET   MP     A +L  +  EVR NG  PWLRPD K+QVT+ Y +      PV V TV++STQH   +T  ++   + E +IKPV+P +++  +T
Sbjct:    1 MSEYLFTSESVSEGHPDKMADQISDAVLDAILAEDPRGRIACETMIKTGIIILGGEVTTSANIDYEAVARETVKRIGYKHHEMGFDGETCGVINILGKQSVDIAQGVD---RDHPEEQGAGDQGLMFGYASNETDVLMPAPITYAHRLVQRQAEVRCNGQLPWLRPDAKSQVTLRYVDGR----PVAVDTVVLSTQHAPDLTQAQVHEAVIEEIIKPVLPEQWITGET 221          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SORC5 (S-adenosylmethionine synthetase OS=Sorangium cellulosum (strain So ce56) GN=metK PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.332e-54
Identity = 114/228 (50.00%), Postives = 150/228 (65.79%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            M  + FTSESV EGHPDK+CDQISDAILD  LE+DP ++VACET  KT + +V G ITT A V+   +VR+T ++IG+    +G D + C VL  IE+QSPDI++GV        E+ GAGDQG MFGYATDET E MP     A +L  KL ++RK+    WLRPDGKTQVT+EY ++     PVRV  V++STQH   V +  I   ++  +I+  IP + +D+ T
Sbjct:    1 MRRYQFTSESVTEGHPDKVCDQISDAILDGILEKDPTARVACETLVKTGMAVVAGEITTSAWVDMPVVVRNTIKDIGYTDAAMGFDYETCAVLTAIEKQSPDISRGVTEGEGLFKEQ-GAGDQGLMFGYATDETSELMPSPISYAHRLARKLADLRKSKKLDWLRPDGKTQVTIEYEDQ----TPVRVSAVVVSTQHSPEVKHKTIVDAVRSLIIEKCIPAKLMDKST 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_LACLS (S-adenosylmethionine synthetase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=metK PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.332e-54
Identity = 122/236 (51.69%), Postives = 154/236 (65.25%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGV---------HGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            E  LFTSESV+EGHPDK+ DQISDAILDA L QDP + VACET   T  V VFG I+T A V+   +VR+T + IG+   + G D  +  V V + +QS DIAQGV         +G L    + IGAGDQG MFG+AT+ET E+MPL+  L+ +L  KL ++RK+G   +LRPD K+QVTVEY N   A    RV TV+ISTQH    TN+EI  D+   VIK +IP E LD++T
Sbjct:    3 EKHLFTSESVSEGHPDKVADQISDAILDAILAQDPHAHVACETVVYTGTVNVFGEISTSAYVDIAHVVRETIKKIGYTDSENGFDYKSVGVHVSLVEQSSDIAQGVNEAEEVRDKNGQLVDPLDLIGAGDQGMMFGFATNETAEYMPLAISLSHKLVKKLADLRKSGEISYLRPDAKSQVTVEYDNNGKAK---RVDTVVISTQHAAAATNEEIHDDVINKVIKAIIPAELLDDET 235          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_STRU0 (S-adenosylmethionine synthetase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=metK PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.740e-54
Identity = 120/233 (51.50%), Postives = 155/233 (66.52%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            E  LFTSESV+EGHPDK+ DQISDAILDA L +DP++ VA ET   T  V VFG I+T A V+  ++VRDT   IG+ + + G  A++  V   + +QS DIAQGV+  L  R  +      IGAGDQG MFG+A DETPE MPL   L+ +L  KL ++RK+G   +LRPD K+QVTVEY + +    PVRV TV+ISTQHD  V+ + I  D+ E VIK VIP  ++D+ T
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETVVYTGSVHVFGEISTSAYVDINRVVRDTIAEIGYTNAEYGFSANSVGVHPSLVEQSTDIAQGVNEALEAREGQKDDLNLIGAGDQGLMFGFAIDETPELMPLPISLSHKLVKKLADLRKSGDITYLRPDAKSQVTVEYDDND---QPVRVDTVVISTQHDPEVSQETIRHDVIEKVIKEVIPTSFIDDNT 232          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_IDILO (S-adenosylmethionine synthetase OS=Idiomarina loihiensis GN=metK PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.740e-54
Identity = 115/230 (50.00%), Postives = 153/230 (66.52%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M   LFTSESV+EGHPDK+ DQISDA+LDA L +DP ++VACET  KT +V+V G I+TKA V+ E + R T ++IG+   D+G D  +C VL  I +QS DI QGV       PEE GAGDQG MFGYA++ET   MP     A ++  + +EVR NGT  WLRPD K+Q+T  Y  ENG   PV + TV++STQH E +T + +   + E +IKPV+P +++ + T F
Sbjct:    1 MSRHLFTSESVSEGHPDKIADQISDAVLDAILAKDPKARVACETYVKTGMVLVGGEISTKAWVDVEDLARQTVKDIGYRHSDMGFDGASCAVLNAIGKQSGDINQGVD---RANPEEQGAGDQGLMFGYASNETSVLMPAPITYAHRVMQRQSEVRNNGTLDWLRPDAKSQLTFVY--ENGK--PVAIDTVVLSTQHREDITQETLREAVMEEIIKPVLPEQWVSKDTQF 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_THIDA (S-adenosylmethionine synthetase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=metK PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.273e-54
Identity = 109/225 (48.44%), Postives = 152/225 (67.56%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            F+FTSESV+EGHPDK+ DQ+SDA+LDA L QD  ++VACET   T L ++ G ITT A ++Y +I R T + IG+ S D+G D + C VLV + +QSPDIAQGV        ++ GAGDQG MFGYA +ETP  MP+   LA +L  + +E+RK+G  PWLRPD K+QV++ Y +      P  + TV++STQHD  V++ +++  + E +IKPV+P + L   T
Sbjct:    5 FIFTSESVSEGHPDKMADQVSDAVLDAILTQDKHARVACETLLTTGLCVIAGEITTTAVIDYNQIARQTIKRIGYDSSDIGFDYNTCSVLVTVGKQSPDIAQGVDRAHDDYLDQ-GAGDQGLMFGYACNETPVLMPMPIHLAHRLTERQSELRKDGRLPWLRPDAKSQVSIRYVDGK----PHSIDTVVLSTQHDPEVSHAQLSEAVIEEIIKPVLPKDMLSADT 224          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_STAES (S-adenosylmethionine synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=metK PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.273e-54
Identity = 116/233 (49.79%), Postives = 152/233 (65.24%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKR----PEEI---GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            LFTSESV EGHPDK+ DQ+SDAILD  L+ DP+++VACET   T + ++ G I+T   V+  K+VR+T ++IG+     G D+    VL  I++QSPDIAQGV   L  R     EEI   GAGDQG MFGYATDET  +MPL   L+ QL  +L +VRK+    +LRPDGK QVTVEY  ++    P R+ T+++STQH E V   +I  D+K HVI P +    LD++T F
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDEILKDDPNARVACETTVTTGMALISGEISTTTYVDIPKVVRETIKDIGYTRAKYGYDSQTMAVLTAIDEQSPDIAQGVDKALEYRNDISEEEIEATGAGDQGLMFGYATDETDTYMPLPIFLSHQLAKRLADVRKDEILDYLRPDGKVQVTVEYGEDD---KPRRIDTIVVSTQHAEDVELAQIEKDIKTHVIYPTVDKALLDDETKF 236          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_STAEQ (S-adenosylmethionine synthetase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=metK PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.273e-54
Identity = 116/233 (49.79%), Postives = 152/233 (65.24%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKR----PEEI---GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            LFTSESV EGHPDK+ DQ+SDAILD  L+ DP+++VACET   T + ++ G I+T   V+  K+VR+T ++IG+     G D+    VL  I++QSPDIAQGV   L  R     EEI   GAGDQG MFGYATDET  +MPL   L+ QL  +L +VRK+    +LRPDGK QVTVEY  ++    P R+ T+++STQH E V   +I  D+K HVI P +    LD++T F
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDEILKDDPNARVACETTVTTGMALISGEISTTTYVDIPKVVRETIKDIGYTRAKYGYDSQTMAVLTAIDEQSPDIAQGVDKALEYRNDISEEEIEATGAGDQGLMFGYATDETDTYMPLPIFLSHQLAKRLADVRKDEILDYLRPDGKVQVTVEYGEDD---KPRRIDTIVVSTQHAEDVELAQIEKDIKTHVIYPTVDKALLDDETKF 236          
The following BLAST results are available for this feature:
BLAST of FC929920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_PROMT1.020e-5450.91S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROMM1.020e-5450.22S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_ALHEH1.020e-5447.37S-adenosylmethionine synthetase OS=Alkalilimnicola... [more]
METK_SORC51.332e-5450.00S-adenosylmethionine synthetase OS=Sorangium cellu... [more]
METK_LACLS1.332e-5451.69S-adenosylmethionine synthetase OS=Lactococcus lac... [more]
METK_STRU01.740e-5451.50S-adenosylmethionine synthetase OS=Streptococcus u... [more]
METK_IDILO1.740e-5450.00S-adenosylmethionine synthetase OS=Idiomarina loih... [more]
METK_THIDA2.273e-5448.44S-adenosylmethionine synthetase OS=Thiobacillus de... [more]
METK_STAES2.273e-5449.79S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAEQ2.273e-5449.79S-adenosylmethionine synthetase OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC34001H03EF PostHarvC1 Citrus clementina cDNA clone C34001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929920 ID=FC929920; Name=FC929920; organism=Citrus clementina; type=EST; length=733bp
GAATTCTAGATCTACCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACT
TTTTTGTTCACTTCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTG
TGATCAGATCTCCGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAG
ATAGCAAGGTGGCTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTT
TTTGGAGGGATCACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCG
TGACACTTGCCGCAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATG
CTGATAACTGTAAGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATC
GCCCAGGGCGTTCATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGC
TGGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAAT
TTATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACC
GAGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGAC
ACAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGA
GAGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAAT
GATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCC
CTGAGAGTACCTTGATGAGAAGACTATCTTCCA
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