FC929920

Overview
NameFC929920
Unique NameFC929920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_RALEH (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=metK PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.273e-54
Identity = 117/223 (52.47%), Postives = 147/223 (65.92%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDE 719
            FLFTSESV+EGHPDK+ DQISDA+LDA L QD  ++VA ET   T LV++ G ITT ANV+Y +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV    S      GAGDQG MFGYA DETPE MP     A +L  + + +R++G  PWLRPD K+QVTV Y +      P  V TV++STQH   +T  +I   + E +IKPV+P E L E
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAVLDAILAQDKYARVAAETLCNTGLVVLAGEITTTANVDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV-DRASDDYLNQGAGDQGLMFGYACDETPELMPFPIYYAHRLVERQSLLRRDGRLPWLRPDAKSQVTVRYVDGK----PHSVDTVVLSTQHSPDITQAQIREAVIEEIIKPVLPAEMLKE 222          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_JANMA (S-adenosylmethionine synthetase OS=Janthinobacterium sp. (strain Marseille) GN=metK PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.273e-54
Identity = 111/223 (49.78%), Postives = 153/223 (68.61%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDE 719
            +LFTSESV+EGHPDK+ DQISDAILDA  +QDP ++VA ET   T LV++ G ITT ANV+Y ++ R T + IG+ + D G+D  +C VLV  ++QSPDIAQGV        ++ GAGDQG MFGYA DETPE MP +   A ++  + +E+RK+G  PWLRPD K+QVT+ Y +      PV + T+++STQH   + + +I   + E +IKPV+P E+L +
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAIFQQDPKARVAAETLCNTGLVVLAGEITTFANVDYIEVARQTIKRIGYDNADYGIDYKSCAVLVAYDKQSPDIAQGVDEGAGIDLDQ-GAGDQGLMFGYACDETPELMPAAIHYAHRIVERQSELRKDGRLPWLRPDAKSQVTLRYVDGR----PVSIDTIVLSTQHAPEMQHKDIEEAVIESIIKPVVPAEWLKD 222          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_DESAD (S-adenosylmethionine synthetase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=metK PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.273e-54
Identity = 111/225 (49.33%), Postives = 145/225 (64.44%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            + FTSESV EGHPDK+ DQISD+ILDA L QD D++VACET   T +  + G I+T    ++++IVRDT R IG+V  D+G DAD C V+  I++QS DIAQGV       PE  GAGDQG MFG+A  ET   MP     A +L  KLTEVRK+ T  +LRPDGKT+V  EY +      PVR+  V+I+ QHD+ +   +I  D+K  V+   +P E +D+ T
Sbjct:    8 YFFTSESVTEGHPDKVADQISDSILDAILAQDKDARVACETLVTTGMAFIAGEISTTGYADFQQIVRDTIREIGYVHSDMGFDADTCAVISSIDKQSVDIAQGVD---RNTPESQGAGDQGMMFGFACKETEALMPAPIYYAHKLSRKLTEVRKDATLDYLRPDGKTEVAFEYLDGK----PVRIADVVIAAQHDDGIEQGQIYEDIKREVVLASLPAEMIDDAT 225          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_CLAMS (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=metK PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.273e-54
Identity = 116/223 (52.02%), Postives = 144/223 (64.57%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEI--------GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI 698
            LFTSESV EGHPDK+CDQISD+ILDA L QDP S+ A ET   T LV V G +TT   V+  +IVRD  R+IG+ S +VG D  NC V V I  QSPDIAQGV      R            GAGDQG MFGYA+ +TP FMPL   LA +L  +L  VR +G   +LRPDGKTQVT+ Y      +VP  V TV++STQH   V+ +++  +++EHVI+PV+
Sbjct:    6 LFTSESVTEGHPDKICDQISDSILDALLTQDPSSRAAVETLVTTGLVHVAGEVTTSGYVDIPQIVRDRIRDIGYDSSEVGFDGSNCGVTVSIGAQSPDIAQGVDRSYESRSGSASTDAHDLQGAGDQGLMFGYASRDTPVFMPLPIYLAHRLAERLAAVRHSGELSYLRPDGKTQVTIGY----EGLVPRTVDTVVLSTQHGPQVSQEDLRREVEEHVIRPVL 224          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_ANADF (S-adenosylmethionine synthetase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=metK PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.273e-54
Identity = 116/225 (51.56%), Postives = 148/225 (65.78%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            +LFTSESV EGHPDK+ DQISDA+LDA L QD   +VACET  KT  VM+ G ITT A + Y K+ R+  + IG+VS D+G D + C VLV ++QQSPDI QGV        +  GAGDQG MFGYA DET E MP     A  +  +L + R+ G   +LRPDGK+QVTVEY    G  V  R+ TV++STQH E+V+N ++ A L+E VI   +P + +D KT
Sbjct:    6 YLFTSESVTEGHPDKMADQISDAVLDAVLAQDKKGRVACETLLKTGYVMIAGEITTTARIEYPKLAREVVKRIGYVSGDMGFDGNTCGVLVAVDQQSPDIGQGV--------DVGGAGDQGMMFGYACDETNELMPAPIQYAHAVTRQLAKARRGG-LDFLRPDGKSQVTVEY---RGGKV-ARIDTVVVSTQHSESVSNRKLHAALREEVIAKALPKKLVDRKT 217          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_CLAM3 (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=metK PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.968e-54
Identity = 116/223 (52.02%), Postives = 144/223 (64.57%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEI--------GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI 698
            LFTSESV EGHPDK+CDQISD+ILDA L QDP S+ A ET   T LV V G +TT   V+  +IVRD  R+IG+ S +VG D  NC V V I  QSPDIAQGV      R            GAGDQG MFGYA+ +TP FMPL   LA +L  +L  VR +G   +LRPDGKTQVT+ Y      +VP  V TV++STQH   V+ +++  +++EHVI+PV+
Sbjct:    6 LFTSESVTEGHPDKICDQISDSILDALLTQDPTSRAAVETLVTTGLVHVAGEVTTSGYVDIPQIVRDRIRDIGYDSSEVGFDGSNCGVTVSIGAQSPDIAQGVDRSYESRSGSASTDAHDLQGAGDQGLMFGYASRDTPVFMPLPIYLAHRLAERLAAVRHSGELAYLRPDGKTQVTIGY----EGLVPRTVDTVVLSTQHGPQVSQEDLRREVEEHVIRPVL 224          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_BUCAT (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=metK PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.968e-54
Identity = 113/230 (49.13%), Postives = 153/230 (66.52%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M  +LFTSESV+EGHPDK+ DQISDA+LD  L+QD  ++VACET  KT +V++ G ITT A V+ E+I R T  +IG+V+ D G DA++C VL  I +QSPDI QG++      P + GAGDQG +FGYAT+ET  FMP     A  L  K +E+RK    PWLRPD K+QVT +Y N N     + + TV++STQH E +T   +   + + +IKPV+P ++L + T F
Sbjct:    1 MTEYLFTSESVSEGHPDKIADQISDALLDEILKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRKTINDIGYVNSDAGFDANSCAVLSAIGKQSPDINQGINRF---DPLKQGAGDQGIIFGYATNETEFFMPAPITYAHLLMQKQSELRKKNILPWLRPDAKSQVTFKYNNGN----IIAIDTVVLSTQHQENITQKYLKEAVMDEIIKPVLPDKWLTKNTKF 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_BUCAI (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=metK PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.968e-54
Identity = 113/230 (49.13%), Postives = 153/230 (66.52%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M  +LFTSESV+EGHPDK+ DQISDA+LD  L+QD  ++VACET  KT +V++ G ITT A V+ E+I R T  +IG+V+ D G DA++C VL  I +QSPDI QG++      P + GAGDQG +FGYAT+ET  FMP     A  L  K +E+RK    PWLRPD K+QVT +Y N N     + + TV++STQH E +T   +   + + +IKPV+P ++L + T F
Sbjct:    1 MTEYLFTSESVSEGHPDKIADQISDALLDEILKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRKTINDIGYVNSDAGFDANSCAVLSAIGKQSPDINQGINRF---DPLKQGAGDQGIIFGYATNETEFFMPAPITYAHLLMQKQSELRKKNILPWLRPDAKSQVTFKYNNGN----IIAIDTVVLSTQHQENITQKYLKEAVMDEIIKPVLPDKWLTKNTKF 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_BUCA5 (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=metK PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.968e-54
Identity = 113/230 (49.13%), Postives = 153/230 (66.52%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M  +LFTSESV+EGHPDK+ DQISDA+LD  L+QD  ++VACET  KT +V++ G ITT A V+ E+I R T  +IG+V+ D G DA++C VL  I +QSPDI QG++      P + GAGDQG +FGYAT+ET  FMP     A  L  K +E+RK    PWLRPD K+QVT +Y N N     + + TV++STQH E +T   +   + + +IKPV+P ++L + T F
Sbjct:    1 MTEYLFTSESVSEGHPDKIADQISDALLDEILKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRKTINDIGYVNSDAGFDANSCAVLSAIGKQSPDINQGINRF---DPLKQGAGDQGIIFGYATNETEFFMPAPITYAHLLMQKQSELRKKNILPWLRPDAKSQVTFKYNNGN----IIAIDTVVLSTQHQENITQKYLKEAVMDEIIKPVLPDKWLTKNTKF 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_BORPD (S-adenosylmethionine synthetase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=metK PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.968e-54
Identity = 116/230 (50.43%), Postives = 150/230 (65.22%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEI---GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            FLFTSESV+EGHPDK+ DQISDAILDA   QDP+++VA ET   T LV++ G ITT ANV+Y ++ RDT R IG+ + D G+D   C VLV  ++QSPDIAQGV     ++ E+    GAGDQG MFGYA DETP+ MP     A +L  + +E+RK+G  PWLRPD K+QVT  Y +      PV V TV++STQH   ++   I   + E +IKP  P   +  +T F
Sbjct:    6 FLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV----DRKSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PVEVDTVVLSTQHAPEISQSAIHEAVIEDIIKPSFPEGLITPRTKF 227          
The following BLAST results are available for this feature:
BLAST of FC929920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_RALEH2.273e-5452.47S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]
METK_JANMA2.273e-5449.78S-adenosylmethionine synthetase OS=Janthinobacteri... [more]
METK_DESAD2.273e-5449.33S-adenosylmethionine synthetase OS=Desulfovibrio s... [more]
METK_CLAMS2.273e-5452.02S-adenosylmethionine synthetase OS=Clavibacter mic... [more]
METK_ANADF2.273e-5451.56S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK_CLAM32.968e-5452.02S-adenosylmethionine synthetase OS=Clavibacter mic... [more]
METK_BUCAT2.968e-5449.13S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BUCAI2.968e-5449.13S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BUCA52.968e-5449.13S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BORPD2.968e-5450.43S-adenosylmethionine synthetase OS=Bordetella petr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001H03EF PostHarvC1 Citrus clementina cDNA clone C34001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929920 ID=FC929920; Name=FC929920; organism=Citrus clementina; type=EST; length=733bp
GAATTCTAGATCTACCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACT
TTTTTGTTCACTTCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTG
TGATCAGATCTCCGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAG
ATAGCAAGGTGGCTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTT
TTTGGAGGGATCACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCG
TGACACTTGCCGCAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATG
CTGATAACTGTAAGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATC
GCCCAGGGCGTTCATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGC
TGGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAAT
TTATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACC
GAGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGAC
ACAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGA
GAGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAAT
GATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCC
CTGAGAGTACCTTGATGAGAAGACTATCTTCCA
back to top