FC929920

Overview
NameFC929920
Unique NameFC929920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:49..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_PROM1 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL1A) GN=metK PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.877e-54
Identity = 111/220 (50.45%), Postives = 150/220 (68.18%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVS-DDVGLDADNCKVLVYIEQQSPDIAQGVH---GHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIK 689
            M  ++FTSESV EGHPDK+CDQ+SDA+LDACL +DP S+VACE    T L ++ G IT+KA V++ K+VR+  ++IG+ S  D G DA++C VLV ++QQS DIAQGV+    H +   +++GAGDQG MFG+A DETPE MPL   LA +L  +L  VR      +L PDGKTQV+V Y  ENG  VP  + T+LISTQH   V    +  ++++ + K
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDACLSEDPTSRVACEAVVNTGLCLITGEITSKAEVDFNKLVREVIKSIGYRSASDGGFDANSCAVLVALDQQSSDIAQGVNEAEDHSTDPLDQVGAGDQGIMFGFACDETPELMPLPISLAHRLARRLALVRHQQLIDYLLPDGKTQVSVSY--ENG--VPCSIDTILISTQHKSEVDGITLEEEIQKRIAK 216          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_THEFY (S-adenosylmethionine synthetase OS=Thermobifida fusca (strain YX) GN=metK PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.063e-54
Identity = 120/227 (52.86%), Postives = 143/227 (63.00%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEI-------GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVI 698
            M   LFTSESV EGHPDK+ DQISDAILD+ L  DP S+VA ET   T LV V G +TT   V+   I+R+    IG+ S   G D  +C V V I  QSPDIAQGV      R EEI       GAGDQG MFGYA +ETPE MPL   LA  L  +L EVR++GT P+LRPDGKTQVTVEY        PVR+ TV++S+QH   +   E +  D+KEHV+ PV+
Sbjct:    1 MSRRLFTSESVTEGHPDKIADQISDAILDSMLRDDPHSRVAVETLITTGLVHVAGEVTTSTYVDIPTIIREKILEIGYDSSAKGFDGASCGVSVSIGGQSPDIAQGVDNAYEAREEEIFDDLDRQGAGDQGLMFGYANNETPELMPLPITLAHALSQRLAEVRRDGTIPYLRPDGKTQVTVEYDGNR----PVRLDTVVVSSQHAPDIDLRELLTPDIKEHVVDPVV 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_RALSO (S-adenosylmethionine synthetase OS=Ralstonia solanacearum GN=metK PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.063e-54
Identity = 115/223 (51.57%), Postives = 147/223 (65.92%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDE 719
            FLFTSESV+EGHPDK+ DQISDAILDA L QD  ++VA ET   T LV++ G ITT ANV+Y  + R+T + IG+ + D G+D   C VLV  ++QSPDIAQGV    S      GAGDQG MFGYA DETPE MP     A +L  + +++R++G  PWLRPD K+QVTV Y N      P  V TV++STQH   ++ ++I   + E +IKPV+P   L E
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAILAQDKYARVAAETLCNTGLVVLAGEITTSANVDYIHVARETIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV-DRASDDYLNQGAGDQGLMFGYACDETPELMPFPIYYAHRLVERQSQLRRDGRLPWLRPDAKSQVTVRYVNGK----PHSVDTVVLSTQHAPEISQEQIREAVIEEIIKPVLPSHMLAE 222          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_PROM3 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9303) GN=metK PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.063e-54
Identity = 113/229 (49.34%), Postives = 149/229 (65.07%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDV-GLDADNCKVLVYIEQQSPDIAQGVH---GHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKP 692
            M  ++FTSESV EGHPDK+CDQ+SDA+LDA L QDP S+VACET   T L ++ G +T+ + V++  +VR+  R IG+      G DA +C VLV ++QQSPDIAQGV+    H     +++GAGDQG MFGYA D+TPE MPL   LA +L  +L  VR +G+  +L PDGKTQV+V Y N+     PV + T+LISTQH        DE    + I  DL  HV++P
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDALLAQDPSSRVACETVVNTGLCLITGEVTSNSQVDFIHLVRNVIREIGYSGARAGGFDATSCAVLVALDQQSPDIAQGVNEADDHSGDPLDKVGAGDQGIMFGYACDDTPELMPLPISLAHRLARQLAAVRHDGSLSYLLPDGKTQVSVVYENDR----PVAIDTILISTQHTSEVEGISDENGIRERITQDLWTHVVEP 225          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_CORA7 (S-adenosylmethionine synthetase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=metK PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.063e-54
Identity = 119/221 (53.85%), Postives = 140/221 (63.35%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKR------PEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI 698
            LFTSESV EGHPDK+CD ISDAILDA LE+DPD+ VA ET   T  V V G + T   V   +IVR T   IGF S DVG D   C V V I +QS +I  GV      R       ++ GAGDQG MFGYAT+ETPEFMPL    A  L  +LT VRK G  P LRPDGKTQVT   Y+EN   VP R+ T++ISTQHD  VT + +A  L+ HV++ V+
Sbjct:   11 LFTSESVTEGHPDKICDAISDAILDALLEEDPDAHVAVETLVTTGQVHVVGEVRTSGYVEIPQIVRKTLVEIGFTSSDVGFDGHTCGVNVAIGEQSQEIGAGVDASTEVRSGTFEDDDQYGAGDQGLMFGYATNETPEFMPLPISTAHHLSRRLTHVRKEGIVPSLRPDGKTQVTFA-YDEND--VPTRLETIVISTQHDPEVTQEWLAEQLRTHVVEWVV 228          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_THET8 (S-adenosylmethionine synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=metK PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.613e-54
Identity = 116/229 (50.66%), Postives = 143/229 (62.45%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP-------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDE 719
            L TSESV EGHPDKL D+ISDAILDA + QD  ++VA ET   T LV V G ITT+  V+   +VR T R +G+     G DAD C VL  I++QSPDIA GV+     R        + +GAGDQG MFGYATDETPE MPL   LA +L  +L EVRK G  P+LRPDGK QVTV Y  +     P+ V TV++S QH   V  +++  DL   V++  IP EYL +
Sbjct:    6 LVTSESVTEGHPDKLADRISDAILDALIAQDKKARVAAETLVTTGLVFVAGEITTEGYVDIPNLVRKTVREVGYTRAKYGFDADTCAVLTAIDEQSPDIAGGVNLSYEWRVLKSTDPLDRVGAGDQGLMFGYATDETPELMPLPITLAHRLTMRLAEVRKTGLLPYLRPDGKAQVTVVYEGDK----PLYVKTVVVSAQHSPEVEQEQLREDLIREVVRQAIPPEYLKD 230          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_THET2 (S-adenosylmethionine synthetase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=metK PE=3 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 6.613e-54
Identity = 116/229 (50.66%), Postives = 143/229 (62.45%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP-------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDE 719
            L TSESV EGHPDKL D+ISDAILDA + QD  ++VA ET   T LV V G ITT+  V+   +VR T R +G+     G DAD C VL  I++QSPDIA GV+     R        + +GAGDQG MFGYATDETPE MPL   LA +L  +L EVRK G  P+LRPDGK QVTV Y  +     P+ V TV++S QH   V  +++  DL   V++  IP EYL +
Sbjct:    6 LVTSESVTEGHPDKLADRISDAILDALIAQDKKARVAAETLVTTGLVFVAGEITTEGYVDIPNLVRKTVREVGYTRAKYGFDADTCAVLTAIDEQSPDIAGGVNLSYEWRVLKSTDPLDRVGAGDQGLMFGYATDETPELMPLPITLAHRLTMRLAEVRKTGLLPYLRPDGKAQVTVVYEGDK----PLYVKTVVVSAQHSPEVEQEQLREDLIREVVRQAIPPEYLKD 230          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SYNY3 (S-adenosylmethionine synthetase OS=Synechocystis sp. (strain PCC 6803) GN=metK PE=3 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 6.613e-54
Identity = 113/226 (50.00%), Postives = 154/226 (68.14%), Query Frame = 3
Query:   30 LKKNMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGV-------HGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETV----TNDEIAADLK 674
            LK   + +LFTSESV EGHPDK+CDQISD ILDA L  DP+S+VA ET   T L +V G IT++A++N+ +++R     IG+ + D G  A++C V++ I++QSPDI+QGV       H       ++IGAGDQG MFGYA +ETPE MPL   LA ++  +L+EVRK+G   +LRPDGKTQV++ Y  E+G+  PV + T+LISTQHDE +     ND + A +K
Sbjct:    4 LKTLSKRYLFTSESVTEGHPDKVCDQISDTILDALLTLDPNSRVAAETVVNTGLTLVTGEITSQAHINFVELIRQKIAEIGYTNADNGYSANSCAVMLAIDEQSPDISQGVTAAQEQRHALSDDELDKIGAGDQGLMFGYACNETPELMPLPISLAHRIALRLSEVRKSGQLAYLRPDGKTQVSILY--EDGS--PVAIDTILISTQHDEHIGDITDNDAVQAKIK 225          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_POLSJ (S-adenosylmethionine synthetase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=metK PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.613e-54
Identity = 118/229 (51.53%), Postives = 154/229 (67.25%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--DETVTNDEIAAD----LKEHVIKPVIP*EYLDE 719
            FLFTSESV+EGHPDK+ DQISDAILDA  +QDP S+VA ET T T LV++ G ITT A+V+Y ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV  H S     IGAGDQG MFGYA DETPE MP     A +L  +  ++RK+G  P+LRPD K+QVT+ Y N      P  + TV++STQH  D++ T  ++ A     + E +IKPV+P E+L E
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFKQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV-DHASDDHLNIGAGDQGLMFGYACDETPELMPAPIYYAHRLMERQAQLRKDGRLPFLRPDAKSQVTMRYVNGK----PHSIDTVVLSTQHSPDQSETPHKMKASFTEAIIEEIIKPVLPKEWLKE 228          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_BORPE (S-adenosylmethionine synthetase OS=Bordetella pertussis GN=metK PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.613e-54
Identity = 115/227 (50.66%), Postives = 148/227 (65.20%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            FLFTSESV+EGHPDK+ DQISDAILDA   QDP+++VA ET   T LV++ G ITT ANV+Y ++ RDT R+IG+ + + G+D   C VLV  ++QSPDIAQGV    S+     GAGDQG MFGYA DETP+ MP     A +L  + +E+RK+G  PWLRPD K+QVT  Y +      P  V TV++STQH   ++   I   + E +IKP  P   +  KT F
Sbjct:    6 FLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRHIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGV-DRSSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKF 227          
The following BLAST results are available for this feature:
BLAST of FC929920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_PROM13.877e-5450.45S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_THEFY5.063e-5452.86S-adenosylmethionine synthetase OS=Thermobifida fu... [more]
METK_RALSO5.063e-5451.57S-adenosylmethionine synthetase OS=Ralstonia solan... [more]
METK_PROM35.063e-5449.34S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_CORA75.063e-5453.85S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_THET86.613e-5450.66S-adenosylmethionine synthetase OS=Thermus thermop... [more]
METK_THET26.613e-5450.66S-adenosylmethionine synthetase OS=Thermus thermop... [more]
METK_SYNY36.613e-5450.00S-adenosylmethionine synthetase OS=Synechocystis s... [more]
METK_POLSJ6.613e-5451.53S-adenosylmethionine synthetase OS=Polaromonas sp.... [more]
METK_BORPE6.613e-5450.66S-adenosylmethionine synthetase OS=Bordetella pert... [more]

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Properties
Property NameValue
Genbank descriptionC34001H03EF PostHarvC1 Citrus clementina cDNA clone C34001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929920 ID=FC929920; Name=FC929920; organism=Citrus clementina; type=EST; length=733bp
GAATTCTAGATCTACCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACT
TTTTTGTTCACTTCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTG
TGATCAGATCTCCGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAG
ATAGCAAGGTGGCTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTT
TTTGGAGGGATCACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCG
TGACACTTGCCGCAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATG
CTGATAACTGTAAGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATC
GCCCAGGGCGTTCATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGC
TGGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAAT
TTATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACC
GAGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGAC
ACAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGA
GAGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAAT
GATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCC
CTGAGAGTACCTTGATGAGAAGACTATCTTCCA
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