FC929920

Overview
NameFC929920
Unique NameFC929920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:49..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_LACLA (S-adenosylmethionine synthetase OS=Lactococcus lactis subsp. lactis GN=metK PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.473e-53
Identity = 121/236 (51.27%), Postives = 156/236 (66.10%), Query Frame = 3
Query:   45 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGV---------HGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            E  LFTSESV+EGHPDK+ DQISDAILDA L QDP + VACET   T  V VFG I+T A V+   +VR+T + IG+   + G D  +  V V + +QS DIAQGV         +G L    + IGAGDQG MFG+AT+ET E+MPL+  L+ +L  KL ++RK+G   +LRPD K+QVTVE Y++NG     R+ TV+ISTQH  +  N+EI  D+   VIK VIP E LD++T
Sbjct:    3 EKHLFTSESVSEGHPDKVADQISDAILDAILAQDPHAHVACETVVYTGTVNVFGEISTSAYVDIAHVVRETIKKIGYTDSENGFDYKSVGVHVSLVEQSSDIAQGVNEAEEVRDKNGQLVDPLDLIGAGDQGMMFGFATNETAEYMPLAISLSHKLVKKLADLRKSGEISYLRPDAKSQVTVE-YDDNGK--AKRIDTVVISTQHAASARNEEIHDDVINKVIKAVIPAELLDDET 235          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_CYAP8 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain PCC 8801) GN=metK PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.473e-53
Identity = 116/230 (50.43%), Postives = 151/230 (65.65%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP-------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETV--------TNDEIAADLKEHVIKPV 695
            +LF+SESV EGHPDK+CDQISD ILDA L  D  S+VA E    T LV++ G IT+KA+VN+ ++ R     IG+   D G  A++C VLV I++QSPDI+QGV     +R        ++IGAGDQG MFGYA +ETPEFMPL   LA ++  +L  VRK G  P+LRPDGKTQV++ Y  E+G   PV + T+LISTQH ET+           +I +DL E V++PV
Sbjct:    5 YLFSSESVTEGHPDKICDQISDTILDALLYHDDHSRVAAEVVVNTGLVLITGEITSKAHVNFVELARKKIAEIGYTDADNGFSANSCAVLVAIDEQSPDISQGVSAAHEQRESLSNDELDQIGAGDQGIMFGYACNETPEFMPLPISLAHRISRRLAAVRKMGELPYLRPDGKTQVSIVY--EDGK--PVGIDTILISTQHTETIDSLTENSAVQAKIKSDLWEAVVQPV 230          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_RALEJ (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain JMP134) GN=metK PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.924e-53
Identity = 113/223 (50.67%), Postives = 148/223 (66.37%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDE 719
            FLFTSESV+EGHPDK+ DQISDA+LDA L QD  ++VA ET   T LV++ G ITT ANV+Y ++ RDT + IG+ + + G+D   C VLV  ++QSPDIAQGV    S      GAGDQG MFGYA DETPE MP     + +L  + +++R++G  PWLRPD K+QVTV Y +      P  V TV++STQH   +T  +I   + E +IKPV+P E L +
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAVLDAILAQDKYARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGV-DRASDDYLNQGAGDQGLMFGYACDETPELMPFPIYYSHRLVERQSQLRRDGRLPWLRPDAKSQVTVRYVDGR----PHSVDTVVLSTQHAPDITQAQIREAVIEEIIKPVLPPEMLKD 222          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_PSYCK (S-adenosylmethionine synthetase OS=Psychrobacter cryohalolentis (strain K5) GN=metK PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.924e-53
Identity = 111/224 (49.55%), Postives = 147/224 (65.62%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            LFTSESV+EGHPDK+ DQISDAILDA L QD  ++VACET  KT  V++ G ITT AN++ E+IVRDT   IG+   D+G D + C V+  + +QSP+IAQGV       PEE GAGDQG MFGYA++ET   MP     A +L  + +E+R+ G  PWLRPD K QVT++Y        PV +  V++STQHD +++  ++   + E +IK V+P E L   T
Sbjct:    6 LFTSESVSEGHPDKMADQISDAILDAILRQDLHARVACETLVKTGAVVLAGEITTTANIDVERIVRDTVNGIGYHHSDLGFDGETCAVINMLGKQSPEIAQGVD---RADPEEQGAGDQGLMFGYASNETEVLMPAPIEYAHRLMERQSELRRAGELPWLRPDAKAQVTLKYDGNK----PVAIDAVVLSTQHDPSISQADLQEAIMESIIKQVLPAELLHAGT 222          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_NOSP7 (S-adenosylmethionine synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=metK PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.924e-53
Identity = 117/230 (50.87%), Postives = 148/230 (64.35%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE-------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKPV 695
            +LFTSESV EGHPDK+CDQISD ILDA L QDP S+VA E    T LV++ G ITTKANVN+  + R     IG+ + D G  A++  VL+ +++QSPDIAQGV+     R ++       IGAGDQG MFG+A++ETPE MPL   LA ++  +L  VRK G   +LRPDGKTQVTV Y  E+G   PV + T+LISTQH        DE     +I  DL   V++PV
Sbjct:    5 YLFTSESVTEGHPDKICDQISDTILDALLTQDPSSRVAAEVVVNTGLVLITGEITTKANVNFVNLARKKIAEIGYTNADNGFSANSTSVLLALDEQSPDIAQGVNTAQETRQQDSDELFDKIGAGDQGIMFGFASNETPELMPLPISLAHRIARRLAAVRKTGELSYLRPDGKTQVTVVY--EDGR--PVGIDTILISTQHTATIGEITDEAAVQAKIKQDLWSAVVEPV 230          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_MANSM (S-adenosylmethionine synthetase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=metK PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.924e-53
Identity = 113/228 (49.56%), Postives = 150/228 (65.79%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            M ++LFTSESV+EGHPDK+ DQISDA+LD  L+QDP ++VACET  KT + +V G ITT A V+ E I R    +IG+ S ++G D  +C VL  I +QS DI QGV       P   GAGDQG MFGYAT+ET   MP +   A +L  +   VRKNGT PWLRPD K+QVT++Y N       V V  V++STQH ++VT +++   + E +IKPV+P ++L + T
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIEYIARQVICDIGYTSSEMGFDGHSCAVLNGIGKQSSDINQGVD---RDDPLNQGAGDQGIMFGYATNETEVLMPAAITYAHRLMERQAWVRKNGTLPWLRPDAKSQVTLKYENNK----IVGVDAVVLSTQHSDSVTQEDLHEAVMEEIIKPVLPAKWLSKDT 221          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_CORU7 (S-adenosylmethionine synthetase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=metK PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.924e-53
Identity = 119/231 (51.52%), Postives = 142/231 (61.47%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVH-------GHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYL 713
            M   LFTSESV EGHPDK+CD ISD ILDA L +DP ++VA ET   T LV V G + T   V   ++VRDT + IGF S D+G D   C V V I  QSP+I  GV           +   +  GAGDQG MFGYAT+ETPE+MPL   +A +L  +LTEVRK      LRPDGKTQVT EY   + A  PVR+ TV+ISTQHD   T DE+   L EHV+  V+  E L
Sbjct:    1 MSKRLFTSESVTEGHPDKICDAISDTILDAMLTEDPQARVAVETVVTTGLVHVVGEVRTSGYVEIPQLVRDTLKEIGFTSSDMGFDGTTCGVSVSIGAQSPEIGAGVDTSHEVRGSSSTDEDDRQGAGDQGLMFGYATNETPEYMPLPISVAHRLSRRLTEVRKEEIVTGLRPDGKTQVTFEY---DDAGTPVRLDTVVISTQHDPERTQDELRELLSEHVVGHVLADESL 228          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_SYNFM (S-adenosylmethionine synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=metK PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.513e-53
Identity = 113/229 (49.34%), Postives = 147/229 (64.19%), Query Frame = 3
Query:   39 NMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            +M  FLFTSESV EGHPDK+ DQISD+ILDA + +D  ++VACET   T L  V G ITT + V+   I+R T + IG+    +G D   C V+  I++QSPDIAQGV+       EE GAGDQG MFG+A +ETP FMP+    A ++  KL EVRKNG   +LRPDGK+QVTVEY +      P R+ T++++ QH   V+   I   + E VIK V P E +D+KT
Sbjct:    2 SMSNFLFTSESVTEGHPDKVADQISDSILDAIITEDKTARVACETLVTTGLAFVAGEITTSSWVDIPDIIRSTIKGIGYNDSSMGFDWSTCAVITSIDKQSPDIAQGVNPG-EGLFEEQGAGDQGLMFGFACNETPVFMPMPIYYAHRITRKLAEVRKNGVLEFLRPDGKSQVTVEYDDHR----PKRIDTIVVAAQHAPNVSYSMIRESIIEEVIKKVFPPELIDDKT 225          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_PSYA2 (S-adenosylmethionine synthetase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=metK PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.513e-53
Identity = 110/224 (49.11%), Postives = 147/224 (65.62%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            LFTSESV+EGHPDK+ DQISDAILDA L QD  ++VACET  KT  V++ G ITT AN++ E+IVRDT   IG+   D+G D + C V+  + +QSP+IAQGV       PEE GAGDQG MFGYA++ET   MP     A +L  + +E+R+ G  PWLRPD K Q+T++Y        PV +  V++STQHD +++  ++   + E +IK V+P E L   T
Sbjct:    6 LFTSESVSEGHPDKMADQISDAILDAILRQDLHARVACETLVKTGAVILAGEITTTANIDVERIVRDTVNGIGYHHSDLGFDGETCAVINMLGKQSPEIAQGVD---RADPEEQGAGDQGLMFGYASNETEVLMPAPIEYAHRLMERQSELRRAGELPWLRPDAKAQITLKYDGSK----PVAIDAVVLSTQHDPSISQADLQEAIMESIIKQVLPAELLHAGT 222          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_LEIXX (S-adenosylmethionine synthetase OS=Leifsonia xyli subsp. xyli GN=metK PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.513e-53
Identity = 118/222 (53.15%), Postives = 141/222 (63.51%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEI-------GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI 698
            LFTSESV EGHPDK+CDQISD+ILDA L  D  S+VA ET   T LV V G +TTK  V    +VRDT   IG+ S DV  D   C V V I  QSPDIAQGV   L  R E         GAGDQG MFG+AT ETP++MPL   LA +L  +L  VRK+GT  +LRPDGKTQVT+ Y       VP  V TV++STQH   + + ++ AD+ E VI+PV+
Sbjct:    6 LFTSESVTEGHPDKICDQISDSILDALLAVDEHSRVAVETLVTTGLVHVAGEVTTKGYVEIPALVRDTIVEIGYDSSDVSFDGTQCGVSVSIGAQSPDIAQGVDNALETRSERSQDDLDRQGAGDQGIMFGFATTETPQYMPLPIWLAHRLAERLAAVRKDGTLGYLRPDGKTQVTIGY----EGYVPKSVQTVVLSTQHARDIPSQQLRADVIEQVIEPVM 223          
The following BLAST results are available for this feature:
BLAST of FC929920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LACLA1.473e-5351.27S-adenosylmethionine synthetase OS=Lactococcus lac... [more]
METK_CYAP81.473e-5350.43S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_RALEJ1.924e-5350.67S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]
METK_PSYCK1.924e-5349.55S-adenosylmethionine synthetase OS=Psychrobacter c... [more]
METK_NOSP71.924e-5350.87S-adenosylmethionine synthetase OS=Nostoc punctifo... [more]
METK_MANSM1.924e-5349.56S-adenosylmethionine synthetase OS=Mannheimia succ... [more]
METK_CORU71.924e-5351.52S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_SYNFM2.513e-5349.34S-adenosylmethionine synthetase OS=Syntrophobacter... [more]
METK_PSYA22.513e-5349.11S-adenosylmethionine synthetase OS=Psychrobacter a... [more]
METK_LEIXX2.513e-5353.15S-adenosylmethionine synthetase OS=Leifsonia xyli ... [more]

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Properties
Property NameValue
Genbank descriptionC34001H03EF PostHarvC1 Citrus clementina cDNA clone C34001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929920 ID=FC929920; Name=FC929920; organism=Citrus clementina; type=EST; length=733bp
GAATTCTAGATCTACCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACT
TTTTTGTTCACTTCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTG
TGATCAGATCTCCGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAG
ATAGCAAGGTGGCTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTT
TTTGGAGGGATCACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCG
TGACACTTGCCGCAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATG
CTGATAACTGTAAGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATC
GCCCAGGGCGTTCATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGC
TGGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAAT
TTATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACC
GAGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGAC
ACAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGA
GAGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAAT
GATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCC
CTGAGAGTACCTTGATGAGAAGACTATCTTCCA
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